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1.
New For (Dordr) ; 54(4): 661-696, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37361260

RESUMO

Dutch elm disease (DED) is a vascular wilt disease caused by the pathogens Ophiostoma ulmi and Ophiostoma novo-ulmi with multiple ecological phases including pathogenic (xylem), saprotrophic (bark) and vector (beetle flight and beetle feeding wound) phases. Due to the two DED pandemics during the twentieth century the use of elms in landscape and forest restoration has declined significantly. However new initiatives for elm breeding and restoration are now underway in Europe and North America. Here we discuss complexities in the DED 'system' that can lead to unintended consequences during elm breeding and some of the wider options for obtaining durability or 'field resistance' in released material, including (1) the phenotypic plasticity of disease levels in resistant cultivars infected by O. novo-ulmi; (2) shortcomings in test methods when selecting for resistance; (3) the implications of rapid evolutionary changes in current O. novo-ulmi populations for the choice of pathogen inoculum when screening; (4) the possibility of using active resistance to the pathogen in the beetle feeding wound, and low attractiveness of elm cultivars to feeding beetles, in addition to resistance in the xylem; (5) the risk that genes from susceptible and exotic elms be introgressed into resistant cultivars; (6) risks posed by unintentional changes in the host microbiome; and (7) the biosecurity risks posed by resistant elm deployment. In addition, attention needs to be paid to the disease pressures within which resistant elms will be released. In the future, biotechnology may further enhance our understanding of the various resistance processes in elms and our potential to deploy trees with highly durable resistance in elm restoration. Hopefully the different elm resistance processes will prove to be largely under durable, additive, multigenic control. Elm breeding programmes cannot afford to get into the host-pathogen arms races that characterise some agricultural host-pathogen systems.

2.
Plant Dis ; 101(5): 666-673, 2017 May.
Artigo em Inglês | MEDLINE | ID: mdl-30678572

RESUMO

Phytophthora ramorum is the causal agent of sudden oak death and sudden larch death, and is also responsible for causing ramorum blight on woody ornamental plants. Many microsatellite markers are available to characterize the genetic diversity and population structure of P. ramorum. However, only two markers are polymorphic in the NA2 lineage, which is predominant in Canadian nurseries. Microsatellite motifs were mined from whole-genome sequence data of six P. ramorum NA2 isolates. Of the 43 microsatellite primer pairs selected, 13 loci displayed different allele sizes among the four P. ramorum lineages, 10 loci displayed intralineage variation in the EU1, EU2, and/or NA1 lineages, and 12 microsatellites displayed polymorphism in the NA2 lineage. Genotyping of 272 P. ramorum NA2 isolates collected in nurseries in British Columbia, Canada, from 2004 to 2013 revealed 12 multilocus genotypes (MLGs). One MLG was dominant when examined over time and across sampling locations, and only a few mutations separated the 12 MLGs. The NA2 population observed in Canadian nurseries also showed no signs of sexual recombination, similar to what has been observed in previous studies. The markers developed in this study can be used to assess P. ramorum inter- and intralineage genetic diversity and generate a better understanding of the population structure and migration patterns of this important plant pathogen, especially for the lesser-characterized NA2 lineage.

3.
IMA Fungus ; 14(1): 4, 2023 Feb 23.
Artigo em Inglês | MEDLINE | ID: mdl-36823663

RESUMO

Invasive, exotic plant pathogens pose a major threat to native and agricultural ecosystems. Phytophthora × cambivora is an invasive, destructive pathogen of forest and fruit trees causing severe damage worldwide to chestnuts (Castanea), apricots, peaches, plums, almonds and cherries (Prunus), apples (Malus), oaks (Quercus), and beech (Fagus). It was one of the first damaging invasive Phytophthora species to be introduced to Europe and North America, although its origin is unknown. We determined its population genetic history in Europe, North and South America, Australia and East Asia (mainly Japan) using genotyping-by-sequencing. Populations in Europe and Australia appear clonal, those in North America are highly clonal yet show some degree of sexual reproduction, and those in East Asia are partially sexual. Two clonal lineages, each of opposite mating type, and a hybrid lineage derived from these two lineages, dominated the populations in Europe and were predominantly found on fagaceous forest hosts (Castanea, Quercus, Fagus). Isolates from fruit trees (Prunus and Malus) belonged to a separate lineage found in Australia, North America, Europe and East Asia, indicating the disease on fruit trees could be caused by a distinct lineage of P. × cambivora, which may potentially be a separate sister species and has likely been moved with live plants. The highest genetic diversity was found in Japan, suggesting that East Asia is the centre of origin of the pathogen. Further surveys in unsampled, temperate regions of East Asia are needed to more precisely identify the location and range of the centre of diversity.

4.
J Fungi (Basel) ; 7(3)2021 Mar 18.
Artigo em Inglês | MEDLINE | ID: mdl-33803849

RESUMO

As global plant trade expands, tree disease epidemics caused by pathogen introductions are increasing. Since ca 2000, the introduced oomycete Phytophthora ramorum has caused devastating epidemics in Europe and North America, spreading as four ancient clonal lineages, each of a single mating type, suggesting different geographical origins. We surveyed laurosilva forests for P. ramorum around Fansipan mountain on the Vietnam-China border and on Shikoku and Kyushu islands, southwest Japan. The surveys yielded 71 P. ramorum isolates which we assigned to eight new lineages, IC1 to IC5 from Vietnam and NP1 to NP3 from Japan, based on differences in colony characteristics, gene x environment responses and multigene phylogeny. Molecular phylogenetic trees and networks revealed the eight Asian lineages were dispersed across the topology of the introduced European and North American lineages. The deepest node within P. ramorum, the divergence of lineages NP1 and NP2, was estimated at 0.5 to 1.6 Myr. The Asian lineages were each of a single mating type, and at some locations, lineages of "opposite" mating type were present, suggesting opportunities for inter-lineage recombination. Based on the high level of phenotypic and phylogenetic diversity in the sample populations, the coalescence results and the absence of overt host symptoms, we conclude that P. ramorum comprises many anciently divergent lineages native to the laurosilva forests between eastern Indochina and Japan.

5.
Virus Genes ; 39(1): 132-6, 2009 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-19430898

RESUMO

The incomplete sequences of two large, 10-12 kbp, double-stranded RNAs (dsRNAs) found in the TW-2 isolate of the saprophytic fungus, Phlebiopsis gigantea (Pg) are reported. Both PgV-TW2 dsRNA1 and dsRNA2 potentially encode fusion proteins which are apparently expressed by a translational frameshifting mechanism. The C-terminal region of both predicted proteins was 21% identical and contained the eight motifs conserved in RNA-dependent RNA polymerases of dsRNA mycoviruses and had highest similarity with members of the family Totiviridae, but possibly do not form virions. The remainder of the N-terminal protein sequences predicted from the PgV-TW2 dsRNA1 and dsRNA2 sequences and the 3'-terminal nucleotide sequences of both dsRNAs had no homology with one another or any sequence in the database suggesting that individually both may be members of novel families of mycoviruses.


Assuntos
Basidiomycota/virologia , RNA de Cadeia Dupla/genética , RNA de Cadeia Dupla/isolamento & purificação , Sequência de Aminoácidos , Dados de Sequência Molecular , Filogenia , RNA Polimerase Dependente de RNA/genética , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos , Totiviridae/genética , Proteínas Virais/genética
6.
For Pathol ; 49(2): e12484, 2019 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-31130819

RESUMO

We describe a method for inoculating rachises of Fraxinus excelsior (European or common ash) with Hymenoscyphus fraxineus, which is faster than previous methods and allows associated foliar symptoms to be assessed on replicate leaves. A total of ten ash seedlings were inoculated with five isolates of H. fraxineus and lesion development assessed over four weeks. A five-point disease progress scale of symptom development was developed from no lesion (0), lesion on rachis (1), "pre-top dead," with curling of distal leaflets and bending of the rachis (2), top dead, with wilting and death of distal leaflets (3) to leaf abscission (4). The method revealed variation in aggressiveness of H. fraxinus isolates and may be suitable for assessing the resistance of F. excelsior and other Fraxinus species to dieback. The in vitro growth rate of H. fraxineus isolates was highly correlated with both disease progress and the length of rachis lesions on susceptible plants, indicating that it can be used as a preliminary step in selecting isolates with high aggressiveness for use in resistance screening.

7.
mBio ; 10(2)2019 03 12.
Artigo em Inglês | MEDLINE | ID: mdl-30862749

RESUMO

Invasive alien species often have reduced genetic diversity and must adapt to new environments. Given the success of many invasions, this is sometimes called the genetic paradox of invasion. Phytophthora ramorum is invasive, limited to asexual reproduction within four lineages, and presumed clonal. It is responsible for sudden oak death in the United States, sudden larch death in Europe, and ramorum blight in North America and Europe. We sequenced the genomes of 107 isolates to determine how this pathogen can overcome the invasion paradox. Mitotic recombination (MR) associated with transposons and low gene density has generated runs of homozygosity (ROH) affecting 2,698 genes, resulting in novel genotypic diversity within the lineages. One ROH enriched in effectors was fixed in the NA1 lineage. An independent ROH affected the same scaffold in the EU1 lineage, suggesting an MR hot spot and a selection target. Differences in host infection between EU1 isolates with and without the ROH suggest that they may differ in aggressiveness. Non-core regions (not shared by all lineages) had signatures of accelerated evolution and were enriched in putative pathogenicity genes and transposons. There was a striking pattern of gene loss, including all effectors, in the non-core EU2 genome. Positive selection was observed in 8.0% of RxLR and 18.8% of Crinkler effector genes compared with 0.9% of the core eukaryotic gene set. We conclude that the P. ramorum lineages are diverging via a rapidly evolving non-core genome and that the invasive asexual lineages are not clonal, but display genotypic diversity caused by MR.IMPORTANCE Alien species are often successful invaders in new environments, despite the introduction of a few isolates with a reduced genetic pool. This is called the genetic paradox of invasion. We found two mechanisms by which the invasive forest pathogen causing sudden oak and sudden larch death can evolve. Extensive mitotic recombination producing runs of homozygosity generates genotypic diversity even in the absence of sexual reproduction, and rapid turnover of genes in the non-core, or nonessential portion of genome not shared by all isolates, allows pathogenicity genes to evolve rapidly or be eliminated while retaining essential genes. Mitotic recombination events occur in genomic hot spots, resulting in similar ROH patterns in different isolates or groups; one ROH, independently generated in two different groups, was enriched in pathogenicity genes and may be a target for selection. This provides important insights into the evolution of invasive alien pathogens and their potential for adaptation and future persistence.


Assuntos
Evolução Molecular , Variação Genética , Mitose , Phytophthora/classificação , Phytophthora/genética , Doenças das Plantas/microbiologia , Recombinação Genética , Europa (Continente) , Florestas , Genótipo , América do Norte , Análise de Sequência de DNA
8.
Fungal Biol ; 121(2): 112-126, 2017 02.
Artigo em Inglês | MEDLINE | ID: mdl-28089043

RESUMO

Following recent discovery of Phytophthora lateralis on native Chamaecyparis obtusa in Taiwan, four phenotypically distinct lineages were discriminated: the Taiwan J (TWJ) and Taiwan K (TWK) in Taiwan, the Pacific Northwest (PNW) in North America and Europe and the UK in west Scotland. Across the four lineages, we analysed 88 isolates from multiple sites for microsatellite diversity. Twenty-one multilocus genotypes (MLGs) were resolved with high levels of diversity of the TWK and PNW lineages. No alleles were shared between the PNW and the Taiwanese lineages. TWK was heterozygous at three loci, whereas TWJ isolates were homozygous apart from one isolate, which exhibited a unique allele also present in the TWK lineage. PNW lineage was heterozygous at three loci. The evidence suggests its origin may be a yet unknown Asian source. North American and European PNW isolates shared all their alleles and also a dominant MLG, consistent with a previous proposal that this lineage is a recent introduction into Europe from North America. The UK lineage was monomorphic and homozygous at all loci. It shared its alleles with the PNW and the TWJ and TWK lineages, hence a possible origin in a recent hybridisation event between a Taiwan lineage and PNW cannot be ruled out.


Assuntos
Variação Genética , Repetições de Microssatélites , Phytophthora/classificação , Phytophthora/genética , Chamaecyparis/microbiologia , Europa (Continente) , Evolução Molecular , América do Norte , Phytophthora/isolamento & purificação , Análise de Sequência de DNA , Taiwan
9.
Plant Dis ; 85(4): 411-416, 2001 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-30831974

RESUMO

Fifty-two Phytophthora isolates from necrotic roots of olives were characterized. Colony morphologies on carrot-agar medium led us to separate them into two groups: A (36 isolates) and B (16 isolates). The optimum growth temperature for Group A was about 21°C, with slow growth at 30°C. In contrast, Group B isolates had an optimum temperature for growth of 26°C, and grew rapidly at 30°C. Growth rates, sporangial and oogonial characteristics of the Group A isolates conformed to P. megasperma "BHR-type" sensu stricto. This designation was supported by a sequence analysis of their ITS rDNA regions. Colony patterns, sporangial characteristics and temperature-growth relationships of the Group B isolates conformed closely to those of the 'O-group' taxon of Phytophthora. They also conformed to this unusual taxon in their ITS sequence. In addition, Group B isolates were either entirely self-sterile, self-sterile A1s or weakly self-fertile. Pathogenicity tests showed that both taxa were highly aggressive on roots of olive trees. The association of flooding with Phytophthora infection indicates that the previously reported high sensitivity of olive to root asphyxiation may be more properly regarded as root-rot caused by Phytophthora spp.

10.
Fungal Biol ; 116(11): 1178-91, 2012 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-23153808

RESUMO

Phytophthora ramorum is a recently introduced, aggressive Phytophthora species that has caused extensive mortality of oak and tanoak trees in the western USA and Japanese larch trees in the UK. P. ramorum is also present on Rhododendron, Camellia, and Viburnum in the nursery industry, which is thought to have been the pathway for its spread into new geographic regions including forests and natural ecosystems. Three lineages of P. ramorum have been described, informally designated EU1, NA1, and NA2, and each lineage is believed to originate from an as yet unknown exotic centre of origin. Preliminary SSR and sequence analysis of isolates from a UK P. ramorum survey revealed seven isolates with profiles that did not match the previously known lineages. Detailed SSR and multilocus sequence analysis of these isolates are presented, allowing us to assign these isolates to a new P. ramorum lineage, designated EU2. Although the known geographical origin of these isolates is currently limited to Northern Ireland and western Scotland, the EU2 lineage isolates have been obtained from four different host plants, including Japanese larch. All isolates are of A1 compatibility type, which implies that this finding does not increase the risk of outcrossing with the EU1 lineage isolates already present in the UK. The oldest EU2 strain was isolated in 2007 but no SSR-based intraEU2 lineage genotypic diversity was detected. The combination of these elements points to a recent introduction, despite emergency phytosanitary measures to control introduction and spread. A PCR-RFLP method for the rapid identification of EU2 lineage isolates is presented.


Assuntos
Phytophthora/genética , Doenças das Plantas/microbiologia , Árvores , Sequência de Bases , DNA/química , DNA/genética , DNA Espaçador Ribossômico/química , DNA Espaçador Ribossômico/genética , Complexo IV da Cadeia de Transporte de Elétrons/química , Complexo IV da Cadeia de Transporte de Elétrons/genética , Genes Fúngicos Tipo Acasalamento/genética , Variação Genética , Dados de Sequência Molecular , Irlanda do Norte , Filogenia , Phytophthora/classificação , Doenças das Plantas/genética , Reação em Cadeia da Polimerase , Polimorfismo de Fragmento de Restrição , Escócia , Alinhamento de Sequência , Análise de Sequência de DNA , Tubulina (Proteína)/química , Tubulina (Proteína)/genética , Estados Unidos
11.
Fungal Biol ; 116(12): 1232-49, 2012 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-23245617

RESUMO

Until recently Phytophthora lateralis was known only as the cause of dieback and mortality of Chamaecyparis lawsoniana in its native range in the Pacific Northwest (PNW). Since the 1990s however disease outbreaks have occurred increasingly on ornamental C. lawsoniana in Europe; and in 2007 the pathogen was discovered in soil around old growth Chamaecyparis obtusa in Taiwan, where it may be endemic. When the phenotypes of over 150 isolates of P. lateralis from Taiwan, across the PNW (British Columbia to California) and from France, the Netherlands and the UK were compared three growth rate groups were resolved: one slow growing from Taiwan, one fast growing from the PNW and Europe, and one of intermediate growth from a small area of the UK. Within these growth groups distinct subtypes were identified based on colony patterns and spore metrics and further discriminated in a multivariate analysis. The assumption that the three main growth groups represented phylogenetic units was tested by comparative sequencing of two mitochondrial and three nuclear genes. This assumption was confirmed. In addition two phenotype clusters within the Taiwan growth group were also shown to be phylogenetically distinct. These four phenotypically and genotypically unique populations are informally designated as the PNW lineage, the UK lineage, the Taiwan J lineage, and the Taiwan K lineage. Their characteristics and distribution are described and their evolution, taxonomic, and plant health significance is discussed.


Assuntos
Chamaecyparis/microbiologia , Variação Genética , Phytophthora/classificação , Phytophthora/genética , Microbiologia do Solo , Ásia , Análise por Conglomerados , DNA Fúngico/química , DNA Fúngico/genética , DNA Mitocondrial/química , DNA Mitocondrial/genética , Europa (Continente) , Genótipo , Microscopia , Dados de Sequência Molecular , América do Norte , Fenótipo , Filogenia , Phytophthora/isolamento & purificação , Phytophthora/fisiologia , Doenças das Plantas/microbiologia , Análise de Sequência de DNA , Esporos Fúngicos/citologia
12.
Fungal Biol ; 115(3): 275-87, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21354534

RESUMO

The Himalaya have received little investigation for Phytophthora species. In a remote forest in Western Nepal ten isolates of an unknown Phytophthora were recovered from the rhizosphere of Quercus, Castanopsis, Carpinus and Cupressus spp. The Phytophthora, formally named here as a P. himalsilva sp. nov., is homothallic with either amphigynous or paragynous antheridia and papillate, highly variable sporangia which may also be facultatively caducous. Based on ITS, ß-tubulin, and cox I sequences Phytophthora himalsilva falls within Phytophthora Clade 2c together with Phytophthora citrophthora, Phytophthora meadii, Phytophthora colocasiae, and Phytophthora botryosa. It is suggested that Clade 2c has radiated within Asia. Molecular and sporangial characters indicate that P. himalsilva and P. citrophthora may share a recent common ancestor although they have diverged in their breeding systems. Although highly local the P. himalsilva isolates exhibited significant variation in growth rates and optimum temperatures for growth. This may reflect adaptation to different niches within a heterogeneous sub-tropical to temperate forest environment. Their cox I polymorphisms were also rather variable, including possible clustering for subsite. The occurrence of a previously unknown Phytophthora in a remote forest in Nepal highlights once again the plant health risk associated with moving rooted plants and soil between different bio-geographical regions of the world and the need for rapid pathological screening of potential risk organisms.


Assuntos
Phytophthora/classificação , Microbiologia do Solo , Árvores/microbiologia , DNA Fúngico/análise , DNA Fúngico/genética , DNA Espaçador Ribossômico/análise , DNA Espaçador Ribossômico/genética , Juglans/microbiologia , Dados de Sequência Molecular , Nepal , Fenótipo , Filogenia , Phytophthora/genética , Phytophthora/crescimento & desenvolvimento , Phytophthora/isolamento & purificação , Doenças das Plantas/microbiologia , Raízes de Plantas/microbiologia , Quercus/microbiologia , Rizosfera , Análise de Sequência de DNA , Especificidade da Espécie , Tubulina (Proteína)/genética
13.
Mol Ecol ; 15(1): 249-62, 2006 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-16367844

RESUMO

The Dutch elm disease fungus Ophiostoma novo-ulmi, which has destroyed billions of elm trees worldwide, originally invaded Europe as a series of clonal populations with a single mating type (MAT-2) and a single vegetative incompatibility (vic) type. The populations then rapidly became diverse with the appearance of the MAT-1 type and many vegetative incompatibility types. Here, we have investigated the mechanism using isolates from sites in Portugal at which the rapid evolution of O. novo-ulmi populations from clonality to heterogeneity was well established. We show by genetic mapping of vic and MAT loci with AFLP markers and by sequence analysis of MAT loci that this diversification was due to selective acquisition by O. novo-ulmi of the MAT-1 and vic loci from another species, Ophiostoma ulmi. A global survey showed that interspecies transfer of the MAT-1 locus occurred on many occasions as O. novo-ulmi spread across the world. We discuss the possibility that fixation of the MAT-1 and vic loci occurred in response to spread of deleterious viruses in the originally clonal populations. The process demonstrates the potential of interspecies gene transfer for facilitating rapid adaptation of invasive organisms to a new environment.


Assuntos
Ascomicetos/genética , Evolução Molecular , Transferência Genética Horizontal/genética , Genes Fúngicos Tipo Acasalamento/genética , Filogenia , Sequência de Bases , Mapeamento Cromossômico , Análise por Conglomerados , Primers do DNA , Europa (Continente) , Geografia , Dados de Sequência Molecular , América do Norte , Técnicas de Amplificação de Ácido Nucleico , Polimorfismo de Fragmento de Restrição , Reprodução/genética , Análise de Sequência de DNA
14.
Virus Genes ; 32(2): 137-8, 2006 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-16604444

RESUMO

The two genomic segments of Penicillium Stoloniferum virus S (PsV-S), a member of the Partitiviridae, were recently sequenced and published. We independantly sequenced PsV-S and showed that the original sequence was missing nucleotides at both the 5' and 3' termini of both segments. We determined the correct sequence in three independent experiments and found the segments to be 1753 bp (encoding the RNA-dependant RNA polymerase) and 1581 bp (encoding the Capsid Protein). Homology was shown between the 5' and 3' ends of PsV-S and other members of the Partitiviridae.


Assuntos
Genoma Viral , Penicillium/virologia , Vírus de RNA/genética , RNA Viral/genética , Sequência de Bases , Proteínas do Capsídeo/genética , Dados de Sequência Molecular , RNA Polimerase Dependente de RNA/genética , Análise de Sequência de RNA , Homologia de Sequência do Ácido Nucleico
15.
Mycol Res ; 110(Pt 4): 393-404, 2006 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-16650734

RESUMO

A locally severe crown disease of exotic plantation Eucalyptus trees has been recorded periodically in New Zealand since 1986. Symptoms include leaf spots, petiole infection and twig and small branch lesions. Outbreaks of disease are episodic and individual trees may show marked variation in crown symptoms ranging from unaffected to total defoliation. Two previously unknown species of Phytophthora are associated with the disease. These are described and formally designated here as P. captiosa, from Eucalyptus botryoides and E. saligna; and P. fallax, from E. delegatensis, E. fastigata, E. nitens and E. regnans. Both P. captiosa and P. fallax have non-papillate, non-caducous sporangia and both are self-fertile. Phylogenetic analysis on the basis of ITS rDNA sequence data indicates they are closely related to each other but evolutionarily distant from the majority of described Phytophthora taxa. They share a common ancestor with another assemblage of Phytophthora lineages that includes P. insolita, P. macrochlamydospora and P. richardiae. Sporulation of P. captiosa and P. fallax has not been observed in the field. The mode of infection and spread of these non-caducous Phytophthora species in the eucalypt tree canopy remains unknown. This issue, and the possible geographic origins of these two Phytophthora species are discussed.


Assuntos
Surtos de Doenças , Eucalyptus , Phytophthora/isolamento & purificação , Doenças das Plantas/microbiologia , Sequência de Bases , Classificação , DNA Fúngico/química , DNA Fúngico/genética , DNA Espaçador Ribossômico/química , DNA Espaçador Ribossômico/genética , Nova Zelândia/epidemiologia , Filogenia , Phytophthora/genética , Phytophthora/crescimento & desenvolvimento , Phytophthora/ultraestrutura , Reação em Cadeia da Polimerase , Alinhamento de Sequência , Análise de Sequência de DNA
16.
Virus Genes ; 33(1): 41-4, 2006 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-16791417

RESUMO

Three of the twelve double-stranded (ds) RNAs, dsRNAs 1a, 1b and 3b, which are located in the mitochondria of a diseased isolate, Ld, of the Dutch elm disease fungus, Ophiostoma novo-ulmi have been cDNA cloned and sequenced. Examination of the sequences of the RdRp genes predicted from the nucleotide sequences of the three dsRNAs suggest that they constitute the genome of three new mitoviruses.


Assuntos
Ascomicetos/isolamento & purificação , Ascomicetos/virologia , Vírus de RNA/genética , RNA Viral/genética , RNA Polimerase Dependente de RNA/genética , Sequência de Aminoácidos , Dados de Sequência Molecular , RNA Polimerase Dependente de RNA/química
17.
Virus Genes ; 33(1): 33-9, 2006 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-16791416

RESUMO

The complete nucleotide sequences of two double-stranded (ds) RNA molecules, S1 (1,744 bp) and S2 (1,567 bp), isolated from an isolate HP62 of the Himalayan Dutch elm disease fungus, Ophiostoma himal-ulmi, were determined. RNA S1 had the potential to encode a protein, P1, of 539 amino acids (62.7 kDa), which contained sequence motifs characteristic of RNA-dependent RNA polymerases (RdRps). A database search showed that P1 was closely related to RdRps of members of the genus Partitivirus in the family Partitiviridae. RNA S2 had the potential to encode a protein, P2, of 430 amino acids (46.3 kDa), which was related to capsid proteins of members of the genus Partitivirus. Virus particles isolated from isolate HP62 were shown to be isometric with a diameter of 30 nm, and to contain dsRNAs S1 and S2 and a single capsid protein of 46 kDa. N-terminal sequencing of tryptic peptides derived from the capsid protein proved unequivocally that it is encoded by RNA S2 and corresponds to protein P2. It is concluded that O. himal-ulmi isolate HP62 contains a new member of the genus Partitivirus, which is designated Ophiostoma partitivirus 1. A phylogenetic tree of RdRps of members of the family Partitiviridae showed that there are least two RdRp lineages of viruses currently classified in the genus Partitivirus. One of these lineages contained viruses with fungal hosts and viruses with plant hosts, raising the possibility of horizontal transmission of partitiviruses between plants and fungi. The partitivirus RdRp and capsid proteins appear to have evolved in parallel with the capsid proteins evolving much faster than the RdRps.


Assuntos
Ascomicetos/virologia , Vírus de RNA/química , Vírus de RNA/genética , Sequência de Aminoácidos , Dados de Sequência Molecular , Vírus de RNA/isolamento & purificação , Vírus de RNA/ultraestrutura , RNA de Cadeia Dupla/química , RNA de Cadeia Dupla/genética , RNA de Cadeia Dupla/ultraestrutura , RNA Viral/química , RNA Viral/genética , RNA Viral/ultraestrutura , Vírion/química , Vírion/isolamento & purificação
18.
Mycol Res ; 109(Pt 9): 983-91, 2005 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-16209304

RESUMO

There were two successive pandemics of Dutch Elm Disease (DED) in Europe, parts of Asia and North America in the last century, caused by two ascomycete fungal species, Ophiostoma ulmi and O. novo-ulmi. A third DED species, O. himal-ulmi, was later discovered in the Himalayas. For each of these three species, we now report on the cloning and analysis of a 2.2 kb sequence containing the coding region and 5' and 3' flanking sequences of the mating type B (MAT-B) gene, which is involved in the control of sexual compatibility. The amino acid sequence of the single protein encoded by the gene for each species contained a conserved DNA-binding motif called the high mobility group (HMG) box which showed significant sequence similarity to corresponding sequences in many ascomycete MAT-2 genes. Phylogenetic trees constructed from the MAT-B (renamed MAT-2) nucleotide and derived amino acid sequences showed distinct clades corresponding to the three Ophiostoma species and a clear separation of the O. novo-ulmi clade into the two subspecies americana and novo-ulmi. The 3' flanking regions have been shown to contain variable numbers of repeated oligonucleotide sequences, the number of which is species-specific and readily distinguished by a simple PCR assay.


Assuntos
Ascomicetos/genética , Proteínas Fúngicas/genética , Genes Fúngicos , Genes Fúngicos Tipo Acasalamento , Doenças das Plantas/microbiologia , Ulmus/microbiologia , Motivos de Aminoácidos , Sequência de Aminoácidos , Sequência de Bases , Proteínas de Ligação a DNA/genética , Europa (Continente) , Domínios HMG-Box/genética , Índia , Dados de Sequência Molecular , Filogenia , Análise de Sequência de Proteína , Turquia , Estados Unidos
19.
J Gen Virol ; 86(Pt 5): 1561-1570, 2005 May.
Artigo em Inglês | MEDLINE | ID: mdl-15831970

RESUMO

A new dsRNA was isolated from a Phytophthora isolate from Douglas fir. Sequence analysis showed the dsRNA to consist of 13 883 bp and to contain a single open reading frame with the potential to encode a polyprotein of 4548 aa. This polyprotein contained amino acid sequence motifs characteristic of virus RNA-dependent RNA polymerases (RdRps) in its C-terminal region and motifs characteristic of RNA helicases in its N-terminal region. These sequence motifs were related to corresponding motifs in plant viruses in the genus Endornavirus. In phylogenetic trees constructed from the RdRp and helicase motifs of a range of ssRNA and dsRNA viruses, the Phytophthora RdRp and helicase sequences clustered with those of the plant endornaviruses with good bootstrap support. The properties of the Phytophthora dsRNA are consistent with its being classified as the first non-plant member of the genus Endornavirus, for which we propose the name phytophthora endornavirus 1 (PEV1). A region between the RdRp and helicase domains of the PEV1 protein had significant amino acid sequence similarity to UDP glycosyltransferases (UGTs). Two sequence motifs were identified, one characteristic of all UGTs and the other characteristic of sterol UGTs. The PEV1 UGT would be the first for an RNA virus, although ecdysteroid UGT genes have been found in many baculoviruses. The PEV1 UGT was only distantly related to baculovirus ecdysteroid UGTs, which belong to a family distinct from the sterol UGTs.


Assuntos
Glicosiltransferases/genética , Phytophthora/genética , Phytophthora/virologia , Vírus de RNA/genética , RNA de Cadeia Dupla/genética , RNA de Cadeia Dupla/isolamento & purificação , Motivos de Aminoácidos , Sequência de Aminoácidos , Sequência Conservada , Dados de Sequência Molecular , Fases de Leitura Aberta , Filogenia , Vírus de Plantas/classificação , Vírus de Plantas/genética , RNA Helicases/genética , Vírus de RNA/classificação , RNA Polimerase Dependente de RNA/genética , Análise de Sequência , Análise de Sequência de DNA , Homologia de Sequência
20.
Mycol Res ; 109(Pt 8): 853-9, 2005 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-16175787

RESUMO

A new Phytophthora pathogen of trees and shrubs, previously informally designated Phytophthora taxon C, is formally named here as P. kernoviae. P. kernoviae was discovered in late 2003 during surveys of woodlands in Cornwall, south-west England, for the presence of another invasive pathogen, P. ramorum. P. kernoviae is self-fertile (homothallic), having plerotic oogonia, often with distinctly tapered stalks and amphigynous antheridia. It produces papillate sporangia, sometimes markedly asymmetric with medium length pedicels. Its optimum temperature for growth is ca 18 degrees C and upper limit ca 26 degrees. Currently, P. kernoviae is especially noted for causing bleeding stem lesions on mature Fagus sylvatica and foliar and stem necrosis of Rhododendron ponticum. P. kernoviae is the latest of several invasive tree Phytophthoras recently identified in the UK. Its geographical origins and the possible plant health risk it poses are discussed.


Assuntos
Phytophthora/fisiologia , Doenças das Plantas/microbiologia , Árvores/microbiologia , Phytophthora/classificação , Phytophthora/genética , Phytophthora/patogenicidade , Folhas de Planta/microbiologia , Raízes de Plantas/microbiologia , Caules de Planta/microbiologia , Reino Unido
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