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1.
BMC Biol ; 22(1): 160, 2024 Jul 29.
Artigo em Inglês | MEDLINE | ID: mdl-39075472

RESUMO

BACKGROUND: Salmonid species have followed markedly divergent evolutionary trajectories in their interactions with sea lice. While sea lice parasitism poses significant economic, environmental, and animal welfare challenges for Atlantic salmon (Salmo salar) aquaculture, coho salmon (Oncorhynchus kisutch) exhibit near-complete resistance to sea lice, achieved through a potent epithelial hyperplasia response leading to rapid louse detachment. The molecular mechanisms underlying these divergent responses to sea lice are unknown. RESULTS: We characterized the cellular and molecular responses of Atlantic salmon and coho salmon to sea lice using single-nuclei RNA sequencing. Juvenile fish were exposed to copepodid sea lice (Lepeophtheirus salmonis), and lice-attached pelvic fin and skin samples were collected 12 h, 24 h, 36 h, 48 h, and 60 h after exposure, along with control samples. Comparative analysis of control and treatment samples revealed an immune and wound-healing response that was common to both species, but attenuated in Atlantic salmon, potentially reflecting greater sea louse immunomodulation. Our results revealed unique but complementary roles of three layers of keratinocytes in the epithelial hyperplasia response leading to rapid sea lice rejection in coho salmon. Our results suggest that basal keratinocytes direct the expansion and mobility of intermediate and, especially, superficial keratinocytes, which eventually encapsulate the parasite. CONCLUSIONS: Our results highlight the key role of keratinocytes in coho salmon's sea lice resistance and the diverged biological response of the two salmonid host species when interacting with this parasite. This study has identified key pathways and candidate genes that could be manipulated using various biotechnological solutions to improve Atlantic salmon sea lice resistance.


Assuntos
Copépodes , Doenças dos Peixes , Hiperplasia , Queratinócitos , Oncorhynchus kisutch , Salmo salar , Animais , Copépodes/fisiologia , Doenças dos Peixes/parasitologia , Salmo salar/parasitologia , Hiperplasia/veterinária , Queratinócitos/parasitologia , Resistência à Doença/genética , Interações Hospedeiro-Parasita
2.
J Invertebr Pathol ; 153: 99-108, 2018 03.
Artigo em Inglês | MEDLINE | ID: mdl-29501663

RESUMO

Ciliates have been reported as pathogens of many species of economically important bivalves. Mussel protozoan X (MPX), is an uncharacterised intracellular ciliate of mussels and has been widely reported in Mytilus spp. around the world. In order to characterise this ciliate, Mytilus edulis samples were collected from a site on the West coast of Scotland, and four different fixatives for histological examination were tested. Fresh preparations of mussel digestive glands were also examined by laser scanning confocal microscopy. Intracellular ciliates were prepared by laser capture microdissection and partial sequences of small subunit ribosomal RNA gene and of large subunit ribosomal RNA gene were generated, using Phyllopharyngea primers. Methacarn solution proved to be the best fixative for both histological and molecular characterisation. The morphological and molecular investigations confirmed that this ciliate belongs to the class Phyllopharyngea, order Rhynchodida. However, this organism does not belong to any known family, genus or species, therefore, a new description is necessary, following further morphological analyses. Most mussel samples containing MPX displayed mild to moderate infections, with no signs of necrosis or haemocytic response, although a single sample displayed a severe infection (∼103 ciliates per section). The localisation of this ciliate in tissues other than the digestive gland, the presence of necrosis in infected tissue of the most severely infected mussel and the binary fission of this ciliate have been observed here for the first time. We also report the first observation of the live ciliate isolated from tissue. Although MPX remains of unknown significance to the mussel industry, tools and protocols described here will be useful in further characterising these and other ciliates (subclass Rhynchodia) known as pathogens for bivalves.


Assuntos
Cilióforos , Mytilus edulis/parasitologia , Animais , Cilióforos/genética , Genes de Protozoários , Filogenia
3.
J Fish Dis ; 40(5): 609-620, 2017 May.
Artigo em Inglês | MEDLINE | ID: mdl-27523398

RESUMO

The social media network Facebook™ was used to gather information on the occurrence and geographical distribution of dusky grouper dermatitis, a skin lesion affecting the dusky grouper, Epinephelus marginatus. Dusky grouper are common targets for spear fishermen in the Mediterranean and by monitoring spearfishing activity in Libyan waters, it was possible to document skin lesions from their entries on Facebook. Thirty-two Facebook accounts and 8 Facebook groups posting from 23 Libyan coastal cities provided a retrospective observational data set comprising a total of 382 images of dusky grouper caught by spearfishing between December 2011 and December 2015. Skin lesions were observable on 57/362 fish, for which images were of sufficient quality for analysis, giving a minimal prevalence for lesions of 15.75%. Only dusky grouper exceeding an estimated 40 cm total length exhibited lesions. The ability to collect useful data about the occurrence and geographical distribution of pathological conditions affecting wild fish using social media networks demonstrates their potential utility as a tool to support epidemiological studies and monitor the health of populations of aquatic animals. To our knowledge, this represents the first time that such an approach has been applied for assessing health in a wild population of fish.


Assuntos
Bass , Dermatite/veterinária , Monitoramento Ambiental/métodos , Doenças dos Peixes/diagnóstico , Mídias Sociais , Animais , Dermatite/classificação , Dermatite/diagnóstico , Dermatite/epidemiologia , Monitoramento Ambiental/instrumentação , Doenças dos Peixes/classificação , Doenças dos Peixes/epidemiologia , Líbia/epidemiologia , Vigilância da População , Estudos Retrospectivos , Mídias Sociais/estatística & dados numéricos
4.
J Fish Dis ; 39(12): 1457-1466, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-27144368

RESUMO

In the period 2013-2015, wild dusky grouper, Epinephelus marginatus (Lowe), caught in Libyan coastal waters and ranging in size from 42 to 92 cm in total length, were observed to have distinctive skin lesions of unknown aetiology. Histopathologically, the lesions comprised a multifocal, unilateral or bilateral dermatitis, involving the epidermis, superficial dermis and scale pockets, and sometimes, in severe cases, the hypodermis. Severe lesions had marked epidermal spongiosis progressing to ulceration. Healing was observed in some fish. Bacteria and fungi could be isolated from severe lesions, although they were not seen histopathologically in early-stage lesions. By contrast, metazoan parasite eggs were observed in the dermis and epidermis of some fish with mild and moderate dermatitis. Unidentified gravid digenean trematode parasites carrying similar eggs were also seen within the blood vessels of the deep and superficial dermis. The cause of this distinctive condition, termed dusky grouper dermatitis (DGD), and its potential impact upon already threatened Mediterranean wild dusky grouper populations and upon cultured grouper more widely have yet to be established.


Assuntos
Bass , Dermatite/veterinária , Doenças dos Peixes/patologia , Animais , Dermatite/epidemiologia , Dermatite/etiologia , Dermatite/patologia , Espécies em Perigo de Extinção , Doenças dos Peixes/epidemiologia , Doenças dos Peixes/microbiologia , Doenças dos Peixes/parasitologia , Líbia/epidemiologia
5.
Parasitology ; 142(1): 196-270, 2015 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-25438750

RESUMO

Parasites have a major impact on global finfish and shellfish aquaculture, having significant effects on farm production, sustainability and economic viability. Parasite infections and impacts can, according to pathogen and context, be considered to be either unpredictable/sporadic or predictable/regular. Although both types of infection may result in the loss of stock and incur costs associated with the control and management of infection, predictable infections can also lead to costs associated with prophylaxis and related activities. The estimation of the economic cost of a parasite event is frequently complicated by the complex interplay of numerous factors associated with a specific incident, which may range from direct production losses to downstream socio-economic impacts on livelihoods and satellite industries associated with the primary producer. In this study, we examine the world's major marine and brackish water aquaculture production industries and provide estimates of the potential economic costs attributable to a range of key parasite pathogens using 498 specific events for the purposes of illustration and estimation of costs. This study provides a baseline resource for risk assessment and the development of more robust biosecurity practices, which can in turn help mitigate against and/or minimise the potential impacts of parasite-mediated disease in aquaculture.


Assuntos
Aquicultura/economia , Peixes/parasitologia , Parasitos/isolamento & purificação , Animais
6.
Parasitology ; 140(6): 756-70, 2013 May.
Artigo em Inglês | MEDLINE | ID: mdl-23369461

RESUMO

The life cycle of the parasitic copepod Lernaeocera branchialis involves 2 hosts, typically a pleuronectiform host upon which development of larvae and mating of adults occurs and a subsequent gadoid host, upon which the adult female feeds and reproduces. Both the copepodid and adult female stages must therefore locate and identify a suitable host to continue the life cycle. Several mechanisms are potentially involved in locating a host and ensuring its suitability for infection. These may include mechano-reception to detect host movement and chemo-reception to recognize host-associated chemical cues, or kairomones. The aim of this study was to identify the role of kairomones in host location by adult L. branchialis, by analysing their behaviour in response to fish-derived chemicals. Experiments demonstrated that water conditioned by immersion of whiting, Merlangius merlangus, elicited host-seeking behaviour in L. branchialis, whereas cod- (Gadus morhua) conditioned water did not. Lernaeocera branchialis are considered a genetically homogeneous population infecting a range of gadoids. However, their differential response to whiting- and cod-derived chemicals in this study suggests that either there are genetically determined subspecies of L. branchialis or there is some form of environmental pre-conditioning that allows the parasite to preferentially recognize the host species from which it originated.


Assuntos
Copépodes/fisiologia , Doenças dos Peixes/parasitologia , Gadiformes/parasitologia , Gadus morhua/parasitologia , Doenças Parasitárias em Animais/parasitologia , Feromônios/metabolismo , Animais , Comportamento Animal , Feminino , Gadiformes/metabolismo , Gadus morhua/metabolismo , Especificidade de Hospedeiro , Interações Hospedeiro-Parasita , Reprodução
7.
Fish Physiol Biochem ; 39(5): 1101-14, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-23307174

RESUMO

This study examines the structural differentiation of the apical crypts of mitochondria-rich cells (MRCs) in Nile tilapia as a response to osmotic challenge. Larvae were transferred from freshwater at 3 days post-hatch to 12.5 and 20 ppt and were sampled at 24- and 48-h post-transfer. Scanning electron microscopy allowed quantification of MRCs, based on apical crypt appearance and surface area, resulting in a morphological classification of 'sub-types', that is, Type I or absorptive (surface area range 5.2-19.6 µm(2)), Type II or active absorptive form (surface area range 1.1-15.7 µm(2)), Type III or weakly functioning form (surface area range 0.08-4.6 µm(2)) and Type IV or active secreting form (surface area range 4.1-11.7 µm(2)). Mucus cell crypts were discriminated from those of MRCs based on the presence of globular extensions and quantified. Density and frequency of MRCs and mucus cells varied significantly according to the experimental salinity and time post-transfer; in freshwater-adapted larvae, all types were present except Type IV but, following transfer to elevated salinities, Type I and Type II disappeared and appeared to be replaced by Type IV crypts. Type III crypt density remained constant following transfer. Transmission electron microscopy with immunogold labelling, using a novel pre-fixation technique with anti-Na(+)/K(+)-ATPase, allowed complementary ultrastructural visualisation of specific localisation of the antibodies on active MRCs, permitting a review of MRC apical morphology and related Na(+)/K(+)-ATPase binding sites.


Assuntos
Ciclídeos/fisiologia , Mitocôndrias/fisiologia , Pressão Osmótica/fisiologia , Vesículas Secretórias/ultraestrutura , Análise de Variância , Animais , Imuno-Histoquímica/veterinária , Transporte de Íons/fisiologia , Larva/citologia , Larva/fisiologia , Microscopia Eletrônica de Varredura/veterinária , Microscopia Eletrônica de Transmissão/veterinária
8.
J Theor Biol ; 312: 22-33, 2012 Nov 07.
Artigo em Inglês | MEDLINE | ID: mdl-22842010

RESUMO

Argulus foliaceus is a macroparasite which can have a significant impact on yield in recreational trout fisheries, partly by increasing fish mortalities but also by reducing the appetite of infected fish, making them less likely to respond to bait. The aim of this paper is to determine the impact of four commonly used fish stocking methods both on the parasite dynamics, and on fisheries' yields. The wider consequences of the resultant reduction in host feeding are also of interest. To this end four different stocking methods were incorporated into Anderson and May's macroparasite model, which comprises three differential equations representing the host, attached parasite and free-living parasite populations. To each of these a reduction in the fish capture rate, inversely linked to the mean parasite burden, is added and the effects interpreted. Results show that (1) the common practise of increasing the stocking rate as catches drop may be counterproductive; (2) in the absence of any wild population of reservoir hosts, the parasite will be unable to survive if the stocking rate does not exceed the rate of capture; (3) compensatory stocking to account for fish mortalities can have disastrous consequences on yield; and (4) the parasite can, under certain circumstances, maintain the host population by preventing their capture.


Assuntos
Arguloida/fisiologia , Doenças dos Peixes/parasitologia , Pesqueiros , Interações Hospedeiro-Parasita , Modelos Biológicos , Truta/parasitologia , Animais
9.
Parasitology ; 139(2): 149-90, 2012 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-22078025

RESUMO

Infection by the ciliate protozoan Ichthyophthirius multifiliis Fouquet, 1876 causes significant economic losses in freshwater aquaculture worldwide. Following the ban on the use of malachite green for treating food fish, there has been extensive research aimed at identifying suitable replacements. In this paper we critically assess drug and non-drug interventions, which have been tested for use or have been employed against this parasite and evaluate possibilities for their application in farm systems. Current treatments include the administration of formaldehyde, sodium chloride (salt), copper sulphate and potassium permanganate. However, purportedly more environmentally friendly drugs such as humic acid, potassium ferrate (VI), bronopol and the peracetic acid-based products have recently been tested and represent promising alternatives. Further investigation, is required to optimize the treatments and to establish precise protocols in order to minimize the quantity of drug employed whilst ensuring the most efficacious performance. At the same time, there needs to be a greater emphasis placed on the non-drug aspects of management strategies, including the use of non-chemical interventions focusing on the removal of free-swimming stages and tomocysts of I. multifiliis from farm culture systems. Use of such strategies provides the hope of more environmentally friendly alternatives for the control of I. multifiliis infections.


Assuntos
Antiprotozoários/uso terapêutico , Infecções por Cilióforos/veterinária , Cilióforos , Doenças dos Peixes/tratamento farmacológico , Doenças dos Peixes/parasitologia , Animais , Aquicultura , Infecções por Cilióforos/tratamento farmacológico , Peixes
10.
Parasitol Res ; 110(5): 1639-48, 2012 May.
Artigo em Inglês | MEDLINE | ID: mdl-22065059

RESUMO

Recent developments in semi-automated identification techniques and the increasing ability to rapidly access digital images and taxonomic descriptions offer to increase the range of individuals capable of performing taxonomic identifications. The present study details methodological approaches undertaken in developing a dedicated stain for the visualisation of monogenean haptoral skeletal elements and reproductive sclerites. The histochemical protocols centre around the use of fluorescent dyes and standard light and laser scanning confocal microscopy to support studies of the functional morphology of these hard structures in small, relatively uncompressed specimens, making these structures more amenable to semi-automated analysis and identification techniques. Staining of the sclerites was achieved using a tissue digestion step to remove the tegument and tissues enclosing the sclerites and then staining them in situ with 40 mM chromothrope 2R (C2R) containing 3 mM phosphotungstic acid (PTA) and 0.5% acetic acid (AA) at room temperature for up to 2 days. Visualisation of the armature of the male copulatory organ of warm water Gyrodactylus species was achieved using 40 mM C2R containing 3 mM PTA for 3 days, whilst cold water species were best stained in 6.4 mM C2R for 1 day without an NaOH pre-treatment. The developed techniques allow for good visualisation of the skeletal elements in a number of monogenean groups and promise to assist the preparation and identification/description of specimens. The 2D/3D digital images of specimens prepared in this manner should provide a useful resource for taxonomists and others needing material to assist specimen identification.


Assuntos
Microscopia de Fluorescência/métodos , Parasitologia/métodos , Platelmintos/anatomia & histologia , Coloração e Rotulagem/métodos , Estruturas Animais/anatomia & histologia , Animais , Peixes/parasitologia , Processamento de Imagem Assistida por Computador/métodos , Masculino , Platelmintos/classificação , Platelmintos/isolamento & purificação
11.
J Fish Biol ; 79(3): 597-614, 2011 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-21884103

RESUMO

Ontogenetic changes in the location, size, density and morphology of chloride cells in the Nile tilapia Oreochromis niloticus adapted to fresh and brackish water are described using Na(+) /K(+) -ATPase immunohistochemistry, light microscopy (LM), scanning electron microscopy (SEM) and confocal scanning laser microscopy (CSLM). The pattern of chloride cell distribution changed during development under both treatments, with chloride cell density decreasing significantly from hatch to 7 days post-hatch, but appearing on the inner opercular area at 3 days post-hatch and increasing significantly thereafter (P < 0·05). Chloride cells were always denser in fresh- than in brackish-water larvae. In both treatments, chloride cells located on the outer operculum and tail showed a marked increase in size with age, but cells located on the abdominal epithelium of the yolk sac and the inner operculum showed a significant decrease in size (P < 0·05). Chloride cells from brackish-water adapted larvae from 1 day post-hatch onwards were always significantly larger (P < 0·05) than those from freshwater-adapted larvae. SEM revealed structural differences in chloride cell apical morphology according to environmental conditions. There appears to be clearly defined temporal staging of the appearance of adaptive mechanisms that confer an ability to cope with varying environmental conditions during early development.


Assuntos
Adaptação Fisiológica , Salinidade , Tilápia/crescimento & desenvolvimento , Animais , Feminino , Brânquias/crescimento & desenvolvimento , Larva/crescimento & desenvolvimento , Larva/ultraestrutura , Tilápia/anatomia & histologia
12.
Prog Urol ; 21(8): 554-61, 2011 Sep.
Artigo em Francês | MEDLINE | ID: mdl-21872159

RESUMO

INTRODUCTION: Evaluation of quality of life (QOL) and sexual activity after using sub-urethral Surgimesh® Sling for female stress urinary incontinence (SUI). METHODS: Study with a total duration of 12 months. One hundred and sixty-eight patients presenting a SUI underwent surgery for a Surgimesh® Sling implantation. RESULTS: QOL was significantly improved on the International Consultation Continence Questionnaire (ICIQ) scale with an increase of the average score from 2.79±1.75 to 8.48±1.7 at 12 months (P<0.05). The percentage of patients undergoing sexual intercourses remains at a high level during the study (76.87% versus 78.33%). The number of patients with pain during sexual intercourse significantly decreased (15% versus 2.1%). The QOL score is significantly better in post-operation conditions (7.84 versus 9.20; P=0.001). In terms of continence at 12 months, 75.6% of women declared recovery and 23.53% observed improvements. CONCLUSION: SUI correction using Surgimesh® Sling induces a very significant improvement in patients' QOL and sexual activity.


Assuntos
Qualidade de Vida , Comportamento Sexual , Slings Suburetrais , Incontinência Urinária por Estresse/cirurgia , Feminino , Seguimentos , Humanos , Fatores de Tempo
13.
Heredity (Edinb) ; 105(3): 318-27, 2010 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-19935825

RESUMO

Infectious pancreatic necrosis (IPN) is a viral disease with a significant negative impact on the global aquaculture of Atlantic salmon. IPN outbreaks can occur during specific windows of both the freshwater and seawater stages of the salmon life cycle. Previous research has shown that a proportion of the variation seen in resistance to IPN is because of host genetics, and we have shown that major quantitative trait loci (QTL) affect IPN resistance at the seawater stage of production. In the current study, we completed a large freshwater IPN challenge experiment to allow us to undertake a thorough investigation of the genetic basis of resistance to IPN in salmon fry, with a focus on previously identified QTL regions. The heritability of freshwater IPN resistance was estimated to be 0.26 on the observed scale and 0.55 on the underlying scale. Our results suggest that a single QTL on linkage group 21 explains almost all the genetic variation in IPN mortality under our experimental conditions. A striking contrast in mortality is seen between fry classified as homozygous susceptible versus homozygous resistant, with QTL-resistant fish showing virtually complete resistance to IPN mortality. The findings highlight the importance of the major QTL in the genetic regulation of IPN resistance across distinct physiological lifecycle stages, environmental conditions and viral isolates. These results have clear scientific and practical implications for the control of IPN.


Assuntos
Suscetibilidade a Doenças/veterinária , Doenças dos Peixes/genética , Pancreatopatias/veterinária , Locos de Características Quantitativas , Salmo salar/genética , Animais , Mapeamento Cromossômico , Doenças dos Peixes/transmissão , Água Doce , Genótipo , Repetições de Microssatélites , Necrose , Pancreatopatias/genética
14.
J Microsc ; 240(1): 83-6, 2010 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-21050216

RESUMO

Confocal microscopy has facilitated measurement of stained lipid volume in Lepeophtheirus salmonis copepodid larvae. Quantity of lipid, location and morphology of vesicles may allow an estimate of age and viability.


Assuntos
Copépodes/fisiologia , Lipídeos/análise , Microscopia Confocal , Envelhecimento , Animais , Copépodes/química , Ectoparasitoses/parasitologia , Ectoparasitoses/veterinária , Doenças dos Peixes/parasitologia , Larva/química , Salmão/parasitologia
16.
Ned Tijdschr Geneeskd ; 1632019 05 03.
Artigo em Holandês | MEDLINE | ID: mdl-31120207

RESUMO

Teenagers with torticollis In this article we describe three cases of children with torticollis. A 17-year-old patient who appears to have Klippel-Feil syndrome and is treated conservatively. An 11-year-old-patient with torticollis, present since a fall two days earlier and attributed to a subluxation of C1-C2. Ultimately, she had to be treated surgically with an atlantoaxial spondylodesis and has made a good recovery. Finally, a 15-year-old who presents with torticollis which has been present from early childhood. The diagnosis neglected congenital muscular torticollis is made. Because of increasing discomfort she is treated surgically with release of the sternocleidomastoideus. Postoperative, the patient has fewer symptoms. Physicians should be aware of different causes when there is persistent torticollis. Furthermore, children presenting with posttraumatic torticollis require a strict follow-up because atlanto-axial subluxation can lead to permanent deformity.


Assuntos
Articulação Atlantoaxial/anormalidades , Luxações Articulares/etiologia , Torcicolo/congênito , Adolescente , Criança , Feminino , Humanos , Luxações Articulares/diagnóstico , Masculino , Torcicolo/complicações , Torcicolo/diagnóstico
17.
Bioresour Technol ; 99(9): 3590-9, 2008 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-17869097

RESUMO

The present experiment investigated the possibility of microbial protein production in 250 l indoor tanks by manipulating C:N ratio in fish feed applied. Two different levels of protein feed (35% and 22% CP) resulting in C:N ratio of 8.4 and 11.6, respectively, were applied at 25 g daily in each tank. Tanks were aerated and agitated continuously using a dome diffuser. The experiment was carried out for eight weeks. The biofloc development in terms of VSS and BOD5 was better in the low protein fed tanks than in the high protein fed tanks. An estimated biofloc productivity ranged 3-5 g Cm(-3)day(-1). A 3-D image stained with DAPI indicates that the biofloc is comprised of hundreds of bacterial nuclei, size being ranged from 100 to 200 microm. Biofloc quality was independent of the quality of feed applied and contained more than 50% crude protein, 2.5% crude lipid, 4% fibre, 7% ash and 22 kJ g(-1) energy on dry matter basis. The dietary composition and size of biofloc can be considered as appropriate for all omnivorous fish species. The underlying ecological processes are explained through factor analysis. The potential of using biofloc in fish culture is also discussed.


Assuntos
Ração Animal , Aquicultura/métodos , Proteínas de Bactérias/biossíntese , Carbono/metabolismo , Peixes/crescimento & desenvolvimento , Nitrogênio/metabolismo , Análise de Variância , Animais , Ecossistema , Floculação , Concentração de Íons de Hidrogênio , Indóis , Microscopia Confocal , Oxigênio , Volatilização , Água/normas
18.
J Fish Biol ; 72(9): 2071-2094, 2008 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19125201

RESUMO

The origins, design, fabrication and performance of an Atlantic salmon microarray are described. The microarray comprises 16 950 Atlantic salmon-derived cDNA features, printed in duplicate and mostly sourced from pre-existing expressed sequence tag (EST) collections [SALGENE and salmon genome project (SGP)] but also supplemented with cDNAs from suppression subtractive hybridization libraries and candidate genes involved in immune response, protein catabolism, lipid metabolism and the parr-smolt transformation. A preliminary analysis of a dietary lipid experiment identified a number of genes known to be involved in lipid metabolism. Significant fold change differences (as low as 1.2x) were apparent from the microarray analysis and were confirmed by quantitative real-time polymerase chain reaction analysis. The study also highlighted the potential for obtaining artefactual expression patterns as a result of cross-hybridization of similar transcripts. Examination of the robustness and sensitivity of the experimental design employed demonstrated the greater importance of biological replication over technical (dye flip) replication for identification of a limited number of key genes in the studied system. The TRAITS (TRanscriptome Analysis of Important Traits of Salmon)-salmon genome project microarray has been proven, in a number of studies, to be a powerful tool for the study of key traits of Atlantic salmon biology. It is now available for use by researchers in the wider scientific community.

19.
Physiol Genomics ; 32(1): 33-44, 2007 Dec 19.
Artigo em Inglês | MEDLINE | ID: mdl-17804604

RESUMO

Interferons (IFNs) are cytokines that have proinflammatory, antiviral, and immunomodulatory effects and play a central role during a host response to pathogens. The IFN family contains both type I and type II molecules. While there are a number of type I IFNs, there is only one type II IFN. Recently both type I and type II IFN genes have been cloned in salmonid fish and recombinant proteins produced showing IFN activity. We have stimulated an Atlantic salmon cell line (SHK-1) with both type I and type II recombinant salmonid IFNs and analyzed the transcriptional response by microarray analysis. Cells were exposed to recombinant IFNs for 6 or 24 h or left unexposed as controls. RNA was hybridized to an Atlantic salmon cDNA microarray (salmon 17K feature TRAITS/SGP array) in order to assess differential gene expression in response to IFN exposure. For IFN I and II, 47 and 72 genes were stimulated, respectively; most genes were stimulated by a single IFN type, but some were affected by both IFNs, indicating coregulation of the IFN response in fish. Real-time PCR analysis was employed to confirm the microarray results for selected differentially expressed genes in both a cell line and primary leukocyte cultures.


Assuntos
Interferon Tipo I/genética , Interferon gama/genética , Análise de Sequência com Séries de Oligonucleotídeos , Animais , Técnicas de Cultura de Células/métodos , Linhagem Celular , Clonagem Molecular , Citocinas/genética , DNA Complementar/genética , Proteínas Recombinantes/metabolismo , Salmo salar/fisiologia
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