Isolation of bacterial probiotic candidates from the gastrointestinal tract of rainbow trout, Oncorhynchus mykiss (Walbaum), and screening for inhibitory activity against Flavobacterium psychrophilum.

In this study, 318 bacterial strains were isolated from the gastrointestinal (GI) tracts of 29 rainbow trout, Oncorhynchus mykiss (Walbaum). These bacteria were screened in vitro for their ability to inhibit growth of Flavobacterium psychrophilum, the causative agent of coldwater disease. Bacteria observed to inhibit F. psychrophilum growth were further screened against rainbow trout bile, as an indicator of their ability to survive in the GI tract. This screening resulted in narrowing the pool to 24 bacterial isolates. Those 24 isolates were then tested for pathogenicity in rainbow trout by intraperitoneal injection. Following a 28-day challenge, eight isolates were shown to cause direct mortality and were eliminated from further study. As a result, 16 bacterial isolates were identified as probiotic candidates with the potential to control or reduce disease caused by F. psychrophilum.

Decoupling of erosion and precipitation in the Himalayas.

The hypothesis that abrupt spatial gradients in erosion can cause high strain rates in active orogens has been supported by numerical models that couple erosional processes with lithospheric deformation via gravitational feedbacks. Most such models invoke a 'stream-power' rule, in which either increased discharge or steeper channel slopes cause higher erosion rates. Spatial variations in precipitation and slopes are therefore predicted to correlate with gradients in both erosion rates and crustal strain. Here we combine observations from a meteorological network across the Greater Himalaya, Nepal, along with estimates of erosion rates at geologic timescales (greater than 100,000 yr) from low-temperature thermochronometry. Across a zone of about 20 km length spanning the Himalayan crest and encompassing a more than fivefold difference in monsoon precipitation, significant spatial variations in geologic erosion rates are not detectable. Decreased rainfall is not balanced by steeper channels. Instead, additional factors that influence river incision rates, such as channel width and sediment concentrations, must compensate for decreasing precipitation. Overall, spatially constant erosion is a response to uniform, upward tectonic transport of Greater Himalayan rock above a crustal ramp.

Virus infection of culturable chlorella-like algae and dlevelopment of a plaque assay.

Four distinct viruses with double-stranded DNA are known to replicate in Chlorella-like algae symbiotic with hydras and paramecia. An attempt was made to infect a number of cultured Chlorella strains derived from invertebrate hosts with these viruses. One of the viruses, PBCV-1, replicated in two of the algal strains. Restriction endonuclease analysis of the viral DNA showed that the infectious progeny virus was identical to the input virus; thus, Koch's postulates were fulfilled. Viral infection of the two Chlorella strains has allowed the large-scale production of a eukaryotic algal virus and the development of a plaque assay for the virus.

Hyaluronan synthase of chlorella virus PBCV-1.

Sequence analysis of the 330-kilobase genome of the virus PBCV-1 that infects a chlorella-like green algae revealed an open reading frame, A98R, with similarity to several hyaluronan synthases. Hyaluronan is an essential polysaccharide found in higher animals as well as in a few pathogenic bacteria. Expression of the A98R gene product in Escherichia coli indicated that the recombinant protein is an authentic hyaluronan synthase. A98R is expressed early in PBCV-1 infection and hyaluronan is produced in infected algae. These results demonstrate that a virus can encode an enzyme capable of synthesizing a carbohydrate polymer and that hyaluronan exists outside of animals and their pathogens.

Restriction endonuclease activity induced by PBCV-1 virus infection of a Chlorella-like green alga.

An enzyme was isolated from a eucaryotic, Chlorella-like green alga infected with the virus PBCV-1 which exhibits type II restriction endonuclease activity. The enzyme recognized the sequence GATC and cleaved DNA 5' to the G. Methylation of deoxyadenosine in the GATC sequence inhibited enzyme activity. In vitro the enzyme cleaved host Chlorella nuclear DNA but not viral DNA because host DNA contains GATC and PBCV-1 DNA contains GmATC sequences. PBCV-1 DNA is probably methylated in vivo by the PBCV-1-induced methyltransferase described elsewhere (Y. Xia and J. L. Van Etten, Mol. Cell. Biol. 6:1440-1445). Restriction endonuclease activity was first detected 30 to 60 min after viral infection; the appearance of enzyme activity required de novo protein synthesis, and the enzyme is probably virus encoded. Appearance of enzyme activity coincided with the onset of host DNA degradation after PBCV-1 infection. We propose that the PBCV-1-induced restriction endonuclease participates in host DNA degradation and is part of a virus-induced restriction and modification system in PBCV-1-infected Chlorella cells.

Chlorella virus SC-1A encodes at least five functional and one nonfunctional DNA methyltransferases.

Chlorella virus SC-1A encodes at least six DNA methyltransferases (MTases): four N6-methyldeoxyadenine (m6A) MTases, M x CviSI (TGCmA), M x CviSII (CmATG), M x CviSIII (TCGmA) and M x CviSIV (GmATC), one 5-methyldeoxycytosine (m5C) MTase, M x CviSV (approximately RCmCG), and one nonfunctional m5C MTase, M x CviSVI, which is homologous to the MTase M x CviJI [RGmC(T/C/G)] produced by another chlorella virus IL-3A. Genes encoding three of the SC-1A m6A MTases (M x CviSI, M x CviSII, and M x CviSIII) and the nonfunctional m5C MTase were cloned and sequenced. Neither M x CviSI nor M x CviSIII genes hybridized to genes for their respective isomethylomers, M x CviRI and M x CviBIII, from other chlorella viruses. However, the M x CviSII gene hybridized strongly to its M x CviAII isomethylomer gene from virus PBCV-1. Like the prototype chlorella virus PBCV-1, the SC-1A genome contains inverted terminal repeats, one of which is adjacent to the nonfunctional m5C MTase. The three cloned m6A MTase genes are distributed throughout the approx. 345 kb SC-1A genome.

The evaluation of the patient for lung cancer.

Cancer of the lung which was almost unknown before 1930 is the most rapidly increasing cancer. It is certainly the cause of most cancer deaths in men. Women are not far behind, and it is said that cancer of the lung in women will surpass breast cancer in the next several years. This article will evaluate the suspect patient who visits his family doctor with one or more of the cardinal signs of cough, hemoptysis, chest pain, or shortness of breath and will establish the diagnosis by x-ray, bronchoscopy, cytology, and tissue biopsy. As the staging is evolved, treatment is dictated, which may take several forms: chemotherapy, radiologic, surgical, or a combination of any of the three. Probably more important is the symptomatic treatment of various side ailments. All of this must be accomplished with conscientious care and concern.

Clinical applications of a computer-assisted eye model.

A computer-assisted mathematical model of ocular movement has been developed. The model is binocular in operation and allows variation of multiple parameters including: muscle insertions, innervations, length and contractures as well as passive tissue forces. The model can be used in interpretation of clinical findings, such as fourth nerve palsies with contracture of the antagonist inferior oblique.

Restriction endonuclease activity induced by NC-1A virus infection of a Chlorella-like green alga.

A type II restriction endonuclease, CviBI, was isolated from a eukaryotic, Chlorella-like green alga infected with the dsDNA containing virus NC-1A. The enzyme recognizes the sequence GANTC and cleaves DNA between the G and A. Methylation of deoxyadenosine in the GANTC sequence probably inhibits enzyme activity. In vitro CviBI cleaves host nuclear DNA but not viral DNA. A survey of 18 other viruses which infect the same Chlorella sp. revealed that infection with 5 of these viruses also induced a restriction endonuclease which cleaves DNA into the same size fragments as CviBI.

Chlorella viruses encode multiple DNA methyltransferases.

The >320 kb dsDNA genomes of 16 viruses which infect Chlorella strain NC64A and 5 viruses infecting Chlorella strain Pbi were tested for their sensitivity/resistance to more than 80 DNA restriction endonucleases. From the known methylation sensitivities of these enzymes to site-specific 5-methylcytosine and N6-methyladenine DNA modifications, we deduce that the 16 NC64A viruses encode at least 13 different sequence-specific DNA methyltransferases and the 5 Pbi viruses encode at least 7 sequence-specific DNA methyltransferases. Each DNA methyltransferase has a 2 to 4 base pair DNA recognition sequence. Some individual viruses encode as many as ten different DNA methyltransferases, making these chlorella virus genomes among the most concentrated sources of DNA methyltransferase genes known.

The effects of CdCl2 on the maternal-to-fetal clearance of 67Cu and placental blood flow.

Copper is an essential element while Cd is an extremely toxic heavy metal of questionable biological usefulness. Cadmium has been reported to interfere with the metabolism of Cu, be teratogenic, and decrease blood flow in the fetal placenta. Because of these reported biological interactions of Cd and Cu, this investigation was conducted to determine the effects of Cd on placental transport of 67Cu and placental blood flow in the guinea pig. All guinea pigs used were 60 +/- 1 days pregnant. A placental perfusion technique was used to measure the maternal-to-fetal clearance of 67Cu and 3H2O across the placenta. The clearance of 3H2O served as an indicator of placental blood flow on the maternal side of the circulation. The results indicated that an iv injection of 1 mg Cd/kg body weight resulted in an immediate increase in the clearance of 67Cu which declined over the next 8 min to an elevated level compared to the extrapolated best-fit curve of control values. This iv injection of CdCl2 concomitantly reduced the maternal-to-fetal clearance of 3H2O across the placenta. In conclusion, an acute exposure of the pregnant female to CdCl2 results in an increased maternal-to-fetal clearance of 67Cu and a reduced placental blood flow that can alter the supply of nutrients to the developing embryo or fetus, and therefore modify normal development.

Large deletions in antigenic variants of the chlorella virus PBCV-1.

Four spontaneously derived, antigenic variants of chlorella virus PBCV-1 contained 27- to 37-kb deletions in the left end of the 330-kb genome. Two of the mutants, which were serologically identical, had deletions that began from map position 4.9 or 16 and ended at position 42.2 kb. In total, the two deleted regions encoded 28 putative functional open reading frames (ORFs); these deletions probably arose from homologous recombination. The other two mutants, which were serologically identical but distinct from the first two mutants, lacked the entire left terminal 37 kb of the PBCV-1 genome, including an identical 2.2-kb inverted terminal repeat region present at both ends of the wild-type genome. The deleted left end region was replaced by the transposition of an inverted 7.7- or 18.5-kb copy of the right end of the PBCV-1 genome. The region deleted in these two viruses encoded 26 single-copy ORFs, of which 23 were common to those deleted in the first two mutant viruses. The junctions of the deletions/transpositions probably arose from nonhomologous recombination. Taken together, the results indicate that 40.1 kb of single-copy DNA encoding 31 ORFs at the left end of the genome are unnecessary for PBCV-1 replication in Chlorella strain NC64A in the laboratory. The results also indicate that the size of the inverted terminal repeat region in this virus can be highly variable and that the PBCV-1 DNA packaging process tolerates large changes in genome size.

Succinylcholine alteration of the forced duction test.

Prior to strabismus surgery, succinylcholine produces a sustained contraction of the extraocular muscles that interferes with an accurate interpretation of the forced duction test (FDT) for up to 20 minutes. Pancuronium, a nondepolarizing muscle relaxant, does not alter the FDT. Suggestions are given for management of anesthetic induction with or without muscle relaxants to facilitate intubation.

The influence of zinc on the ontogeny of hepatic metallothionein in the fetal rat.

The ontogeny of hepatic metallothioneins (Mt) in fetal tissue as related to dietary and hepatic Zn was investigated. Sixty 6-month-old female rats were divided into two groups and given either double-distilled water or water containing 700 mug of Zn per milliliter. Dams from each group were killed on 16, 19, or 21 days of gestation, and maternal and fetal livers were removed. Mt content of the tissue was estimated by Piotrowski's Hg-saturation method. Results established the presence of an endogenous hepatic Mt in the fetal rat as early as 16 days of gestation. We further demonstrated a marked progressive increase in fetal Mt from Day 16 through gestation accompanied by a decrease in maternal hepatic Mt. It is suggested that Zn increased fetal Mt by inducing fetal synthesis, redistributing fetal Mt, or increasing Mt transport to the fetus, because both fetal and maternal hepatic Mt were increased. Fetal hepatic Mt concentration was several times greater than maternal Mt at corresponding stages of gestation. Mt may serve to either ensure adequate storage of Zn or Cu for fetal development or protect the fetus against metal toxicity, but the significance of these high endogenous levels of fetal Mt are not clear at this time.

Infection of a Chlorella-like alga with the virus PBCV-1: transcriptional studies.

Infection of the unicellular, eukaryotic Chlorella-like green alga NC64A by the large dsDNA containing virus PBCV-1 immediately reduced host RNA synthesis. Chloroplast rRNAs, but not cytosolic rRNAs, were degraded following viral infection. Northern blot analysis utilizing four cloned fragments of PBCV-1 DNA as probes, which represent about 12% of the viral genome, revealed several properties of PBCV-1 transcription: A few viral transcripts were detected within 5 min after infection. Each PBCV-1 DNA clone hybridized to both early and late transcripts which implies that early and late genes are dispersed throughout the viral genome. The transition from early to late transcription occurred between 40 and 60 min after infection coincident with the onset of viral DNA synthesis. Three of the four DNA clones hybridized to transcripts which additively were larger than the corresponding DNA probe. This could reflect RNA processing, presence of overlapping genes, or transcription from both DNA strands. A few, but not all, early transcripts were synthesized in the presence of cycloheximide. This suggests that the virus either carries in its own RNA polymerase or uses a host RNA polymerase for very early viral transcription and that synthesis of additional, later transcripts depends on translation of an early gene product(s).

Replication of the algal virus PBCV-1 in UV-irradiated Chlorella.

The large dsDNA algal virus, PBCV-1, replicates in UV-irradiated Chlorella, albeit more slowly and with a smaller burst size than in untreated Chlorella. Irradiated cells are unable to form colonies, and endogenous RNA and DNA synthesis are reduced to background levels. Thus a fully function host nucleus is not required for PBCV-1 replication.

Characterization of Chlorella virus PBCV-1 CviAII restriction and modification system.

A second DNA site-specific (restriction) endonuclease (R.CviAII) and its cognate adenine DNA methyltransferase (M.CviAII) were isolated from virus PBCV-1 infected Chlorella strain NC64A cells. R.CviAII, a heteroschizomer of the bacterial restriction endonuclease NlaIII, recognizes the sequence CATG, and does not cleave CmATG sequences. However, unlike NlaIII, which cleaves after the G and does not cleave either CmATG or mCATG sequences, CviAII cleaves between the C and A and is unaffected by mCATG methylation. The M.CviAII and R.CviAII genes were cloned and their DNA sequences were determined. These genes are tandemly arranged head-to-tail such that the TAA termination codon of the M.CviAII methyltransferase gene overlaps the ATG translational start site of R.CviAII endonuclease. R.CviAII is the first chlorella virus site-specific endonuclease gene to be cloned and sequenced.

Intron conservation in the DNA polymerase gene encoded by Chlorella viruses.

Previously we reported that 19 of 42 viruses that infect Chlorella strain NC64A (NC64A viruses) contain a short, nuclear-located, spliceosomal-processed intron in a pyrimidine dimer-specific glycosylase/apyrimidine lyase (pdg) gene. Surprisingly, the nucleotide sequence of the intron region is more conserved than the exon regions of the gene (L. Sun et al., 2000, J. Mol. Evol. 50, 82-92). For comparative purposes, we determined the nucleotide sequence of a similar intron type and its flanking coding regions in the DNA polymerase (dnapol) gene from the same 42 NC64A viruses and also 5 viruses that infect Chlorella strain Pbi. Thirty-eight of the 42 NC64A viruses contained a 101-nucleotide intron and the remaining 4 had an 86-nucleotide intron located in the same position in dnapol. The 4 viruses with the smaller intron in dnapol also have a smaller intron in their pdg gene. There was no intron in the dnapol gene of the 5 Pbi viruses. Phylogenetic analyses indicate that the dnapol genes containing the 86-nucleotide intron represent the ancestral condition among the NC64A viruses. The intron in the dnapol gene is phase 0 (keeps codons intact), which differs from the phase 1 intron in the pdg gene. The intron in the dnapol gene, unlike the pdg intron, was conserved (83 to 100% identical) to about the same extent as the coding regions of the gene (78 to 100% identical).