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1.
Anal Biochem ; 524: 68-75, 2017 05 01.
Artigo em Inglês | MEDLINE | ID: mdl-27665677

RESUMO

Monoacylglycerol acyltransferase 2 (MGAT2) catalyzes the synthesis of diacylglycerol (DAG) from free fatty acids (FFA) and sn-monoacylglycerol (MG), the two major hydrolysis products of dietary fat. To demonstrate MGAT2-mediated cellular activity of triglyceride (TG) synthesis, we utilized 1-oleoyl-glycerol-d5 as a substrate to trace MGAT2-driven 1-oleoyl-glycerol-d5 incorporation into TG in HEK293 cells stably expressing human MGAT2. The oleoyl-glycerol-d5 incorporated major TG species were then quantified by liquid chromatography electrospray ionization tandem mass spectrometry (LC/ESI/MS/MS) in a 96-well format. Conventional MGAT2 target-engagement in vivo assays measure the elevation of total plasma TG by orally dosing a bolus of TG oil. We developed a novel LC/ESI/MS/MS-based fat absorption assay to assess the ability of MGAT2 inhibitors to inhibit fat absorption in CD1 mice by a meal tolerance test consisting of a mixture of liquid Boost plus® and 0.59 g/kg U13C-TG oil. The newly resynthesized plasma heavy TGs containing three 13C in the glycerol backbone and two U13C-acyl-chains, which represented the digested, absorbed and resynthesized TGs, were then quantitated by LC/ESI/MS/MS. With this assay, we identified a potent MGAT2 inhibitor that blocked MGAT2-mediated activity in vitro and in vivo. The use of 1-oleoyl-glycerol-d5 and U13C-TG oil followed by LC/ESI/MS/MS detection of stable-isotopic labeled DAG, TG, or glycerol provides a wide range of applications to study pathophysiological regulation of the monoacylglycerol pathway and MGAT2 activity.


Assuntos
Glicerídeos/metabolismo , Glicerol/metabolismo , Metabolismo dos Lipídeos , N-Acetilglucosaminiltransferases/metabolismo , Espectrometria de Massas em Tandem/métodos , Animais , Cromatografia Líquida/métodos , Inibidores Enzimáticos/farmacologia , Células HEK293 , Humanos , Camundongos
2.
J Lipid Res ; 53(6): 1106-16, 2012 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-22493088

RESUMO

Diacylglycerol acyltransferase (DGAT) catalyzes the final step in triglyceride (TG) synthesis. There are two isoforms, DGAT1 and DGAT2, with distinct protein sequences and potentially different physiological functions. To date, the ability to determine clear functional differences between DGAT1 and DGAT2, especially with respect to hepatic TG synthesis, has been elusive. To dissect the roles of these two key enzymes, we pretreated HepG2 hepatoma cells with (13)C(3)-D(5)-glycerol or (13)C(18)-oleic acid, and profiled the major isotope-labeled TG species by liquid chromatography tandem mass spectrometry. Selective DGAT1 and DGAT2 inhibitors demonstrated that (13)C(3)-D(5)-glycerol-incorporated TG synthesis was mediated by DGAT2, not DGAT1. Conversely, (13)C(18)-oleoyl-incorporated TG synthesis was predominantly mediated by DGAT1. To trace hepatic TG synthesis and VLDL triglyceride (VLDL-TG) secretion in vivo, we administered D(5)-glycerol to mice and measured plasma levels of D(5)-glycerol-incorporated TG. Treatment with an antisense oligonucleotide (ASO) to DGAT2 led to a significant reduction in D(5)-glycerol incorporation into VLDL-TG. In contrast, the DGAT2 ASO had no effect on the incorporation of exogenously administered (13)C(18)-oleic acid into VLDL-TG. Thus, our results indicate that DGAT1 and DGAT2 mediate distinct hepatic functions: DGAT2 is primarily responsible for incorporating endogenously synthesized FAs into TG, whereas DGAT1 plays a greater role in esterifying exogenous FAs to glycerol.


Assuntos
Diacilglicerol O-Aciltransferase/metabolismo , Ensaios Enzimáticos/métodos , Glicerol/metabolismo , Fígado/enzimologia , Ácido Oleico/metabolismo , Animais , Diacilglicerol O-Aciltransferase/antagonistas & inibidores , Diacilglicerol O-Aciltransferase/genética , Inibidores Enzimáticos/farmacologia , Esterificação/efeitos dos fármacos , Ácidos Graxos/biossíntese , Ácidos Graxos/metabolismo , Células Hep G2 , Humanos , Marcação por Isótopo , Lipoproteínas VLDL/metabolismo , Masculino , Camundongos , Oligonucleotídeos Antissenso/genética , Triglicerídeos/biossíntese
3.
Rapid Commun Mass Spectrom ; 26(1): 49-60, 2012 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-22215578

RESUMO

A highly unusual rearrangement in collision-induced dissociation mass spectrometry is reported that involves intramolecular transfer of the fluorobenzyl cation between two remote amidic nitrogen atoms separated by five chemical bonds. The same intramolecular transfer was also observed for two related analogs. It is postulated that the ionic reactions are initiated by protonation of the first amidic nitrogen, resulting in formation of the fluorobenzyl cation and a neutral partner that are maintained together in the gas phase by electrostatic interactions as an intermediate ion-neutral complex. In the ion-neutral complex, the nascent fluorobenzyl cation approaches geometrically to the second amidic nitrogen atom on the neutral partner, and subsequently forms a new C-N bond and an isomeric precursor ion as the charge is retained on the amidic nitrogen. The newly formed isomeric precursor ion eventually undergoes the final fragmentation by amide bond cleavage. Alternatively, the ionic reactions proceed through a direct intramolecular transfer mechanism by which the molecular ion adopts to a ring-like configuration in the gas phase, so that both the donor and recipient nitrogens are geometrically close to each other within a bonding distance to permit a direct transfer between two sites even though they are separated by multiple chemical bonds.


Assuntos
Cátions/química , Fluorbenzenos/química , Gases/química , Nitrogênio/química , Isomerismo , Conformação Molecular , Preparações Farmacêuticas/química , Espectrometria de Massas por Ionização por Electrospray
4.
J Lipid Res ; 51(12): 3559-67, 2010 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-20805092

RESUMO

Acyl-CoA:diacylglycerol acyltransferase (DGAT) catalyzes the terminal step in triglyceride (TG) synthesis using diacylglycerol (DAG) and fatty acyl-CoA as substrates. In the liver, the production of VLDL permits the delivery of hydrophobic TG from the liver to peripheral tissues for energy metabolism. We describe here a novel high-content, high-throughput LC/MS/MS-based cellular assay for determining DGAT activity. We treated endogenous DGAT-expressing cells with stable isotope-labeled [¹³C18]oleic acid. The [¹³C18]oleoyl-incorporated TG and DAG lipid species were profiled. The TG synthesis pathway assay was optimized to a one-step extraction, followed by LC/MS/MS quantification. Further, we report a novel LC/MS/MS method for tracing hepatic TG synthesis and VLDL-TG secretion in vivo by administering [¹³C18]oleic acid to rats. The [¹³C18]oleic acid-incorporated VLDL-TG was detected after one-step extraction without conventional separation of TG and recovery by derivatizing [¹³C18]oleic acid for detection. Using potent and selective DGAT1 inhibitors as pharmacological tools, we measured changes in [¹³C18]oleoyl-incorporated TG and DAG and demonstrated that DGAT1 inhibition significantly reduced [¹³C18]oleoyl-incorporated VLDL-TG. This DGAT1-selective assay will enable researchers to discern differences between the roles of DGAT1 and DGAT2 in TG synthesis in vitro and in vivo.


Assuntos
Diacilglicerol O-Aciltransferase/metabolismo , Ensaios Enzimáticos/métodos , Fígado/enzimologia , Animais , Radioisótopos de Carbono/metabolismo , Células Cultivadas , Cromatografia Líquida , Hepatócitos/citologia , Hepatócitos/enzimologia , Humanos , Insetos/citologia , Insetos/enzimologia , Insetos/virologia , Rim/citologia , Rim/embriologia , Rim/enzimologia , Lipoproteínas VLDL/química , Lipoproteínas VLDL/metabolismo , Masculino , Ácido Oleico/metabolismo , Ratos , Ratos Sprague-Dawley , Espectrometria de Massas em Tandem , Triglicerídeos/química , Triglicerídeos/metabolismo
5.
Rapid Commun Mass Spectrom ; 24(15): 2177-85, 2010 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-20583325

RESUMO

Inhibition curve shift is a commonly used approach for screening of time-dependent CYP inhibitors which requires parallel paired incubations to obtain two inhibition curves for comparison. For the control incubation, a test compound is co-incubated with a probe substrate in human liver microsomes (HLM) fortified with NADPH; for the time-dependent incubation (TDI), the test compound is pre-incubated with NADPH-fortified HLM followed by a secondary incubation with a probe substrate. For both incubations, enzyme activity is measured respectively by liquid chromatography/tandem mass spectrometry (LC/MS/MS) analysis of the CYP-specific metabolite, and a TDI inhibitor can be readily identified by inhibition curve shifting as a result of CYP inactivation by the test compound during the pre-incubation. In the present study, we describe an alternative approach to facilitate TDI screening in which stable isotope labeled CYP-specific probes are used for the TDI, and non-labeled substrates are included in the control incubation. Because CYP-specific metabolites produced in the TDI are stable isotope labeled, two sets of incubation samples can be combined and then simultaneously analyzed by LC/MS/MS in the same batch run to reduce the run time. This new method has been extensively validated using both a number of known competitive and TDI inhibitors specific to five most common CYPs such as 1A2, 2C9, 2C19, 2D6, and 3A4. The assay is performed in a 96-well format and can be fully automated. Compared to the traditional method, this approach in combination with sample pooling and a short LC/MS/MS gradient significantly enhances the throughput of TDI screening and thus can be easily implemented in drug discovery to evaluate a large number of compounds without adding additional resource.


Assuntos
Cromatografia Líquida/métodos , Inibidores das Enzimas do Citocromo P-450 , Inibidores Enzimáticos/análise , Ensaios de Triagem em Larga Escala/métodos , Espectrometria de Massas em Tandem/métodos , Humanos , Marcação por Isótopo , Microssomos Hepáticos/química , Microssomos Hepáticos/enzimologia
6.
Sci Rep ; 10(1): 10918, 2020 07 02.
Artigo em Inglês | MEDLINE | ID: mdl-32616798

RESUMO

There is a long-standing concern for the lack of reproducibility of the untargeted metabolomic approaches used in pharmaceutical research. Two types of human plasma samples were split into two batches and analyzed in two individual labs for untargeted GC-MS metabolomic profiling. The two labs used the same silylation sample preparation protocols but different instrumentation, data processing software, and database. There were 55 metabolites annotated reproducibly, independent of the labs. The median coefficient variations (CV%) of absolute spectra ion intensities in both labs were less than 30%. However, the comparison of normalized ion intensity among biological groups, were inconsistent across labs. Predicted power based on annotated metabolites was evaluated post various normalization, data transformation and scaling. For the first time our study reveals the numerical details about the variations in metabolomic annotation and relative quantification using plain inter-laboratory GC-MS untargeted metabolomic approaches. Especially we compare several commonly used post-acquisition strategies and found normalization could not strengthen the annotation accuracy or relative quantification precision of untargeted approach, instead it will impact future experimental design. Standardization of untargeted metabolomics protocols, including sample preparation, instrumentation, data processing, etc., is critical for comparison of untargeted data across labs.


Assuntos
Análise Química do Sangue/métodos , Cromatografia Gasosa-Espectrometria de Massas/métodos , Metabolômica/métodos , Plasma/química , Análise Química do Sangue/instrumentação , Feminino , Cromatografia Gasosa-Espectrometria de Massas/instrumentação , Humanos , Ensaio de Proficiência Laboratorial , Masculino , Metabolômica/instrumentação , Reprodutibilidade dos Testes , Software
7.
Anal Chem ; 80(16): 6410-22, 2008 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-18642850

RESUMO

Constant neutral loss (CNL) and precursor ion (PI) scan have been widely used for the in vitro screening of glutathione conjugates derived from reactive metabolites, but these two methods are only applicable to triple quadrupole or hybrid triple quadrupole mass spectrometers. Additionally, the success of CNL and PI scanning largely depends on structure and CID fragmentation pathways of GSH conjugates. In the present study, a highly efficient methodology has been developed as an alternative approach for high-throughput screening and structural characterization of reactive metabolites using the linear ion trap mass spectrometer. In microsomal incubations, a mixture of glutathione [GSH, gamma-glutamyl-cystein-glycin] and the stable-isotope labeled compound [GSX, gamma-glutamyl-cystein-glycin-(13)C2-(15)N] was used to trap reactive metabolites, resulting in formation of both labeled and unlabeled conjugates at a given isotopic ratio. A mass difference of 3.0 Da between the natural and labeled GSH conjugate (mass tag) at a fixed isotopic ratio constitutes a unique mass pattern that can selectively trigger the data-dependent MS(2) scan of both isotopic partner ions, respectively. In order to eliminate the response bias of GSH adducts in the positive and negative mode, a polarity switch is executed between the mass tag-triggered data dependent MS(2) scan, and thus ESI- and ESI+ MS(2) spectra of both labeled and nonlabeled GSH conjugates are obtained in a single LC-MS run. Unambiguous identification of glutathione adducts was readily achieved with great confidence by MS(2) spectra of both labeled and unlabeled conjugates. Reliability of this method was vigorously validated using several model compounds that are known to form reactive metabolites. This approach is not based on the appearance of a particular product ion such as MH(+) - 129 and anion at m/z 272, whose formation can be structure-dependent and sensitive to the collision energy level; therefore, the present method can be suitable for unbiased screening of any reactive metabolites, regardless of their CID fragmentation pathways. Additionally, this methodology can potentially be applied to triple quadrupole or hybrid triple quadrupole mass spectrometers.


Assuntos
Cresóis/metabolismo , Interpretação Estatística de Dados , Diclofenaco/metabolismo , Glutationa/química , Hidrocarbonetos Halogenados/metabolismo , Indóis/metabolismo , Microssomos Hepáticos/metabolismo , Espectrometria de Massas por Ionização por Electrospray , Cromatografia Líquida de Alta Pressão , Glutationa/metabolismo , Humanos , Marcação por Isótopo , Oxindóis
8.
Curr Top Med Chem ; 17(24): 2716-2739, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28685690

RESUMO

Untargeted metabolomics is a promising approach for reducing the significant attrition rate for discovering and developing drugs in the pharmaceutical industry. This review aims to highlight the practical decision-making value of untargeted metabolomics for the advancement of drug candidates in drug discovery/development including potentially identifying and validating novel therapeutic targets, creating alternative screening paradigms, facilitating the selection of specific and translational metabolite biomarkers, identifying metabolite signatures for the drug efficacy mechanism of action, and understanding potential drug-induced toxicity. The review provides an overview of the pharmaceutical process workflow to discover and develop new small molecule drugs followed by the metabolomics process workflow that is involved in conducting metabolomics studies. The pros and cons of the major components of the pharmaceutical and metabolomics workflows are reviewed and discussed. Finally, selected untargeted metabolomics literature examples, from primarily 2010 to 2016, are used to illustrate why, how, and where untargeted metabolomics can be integrated into the drug discovery/preclinical drug development process.


Assuntos
Descoberta de Drogas , Metabolômica , Humanos
9.
Curr Top Med Chem ; 17(24): 2791-2804, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28685696

RESUMO

We have developed a targeted metabolomics screen which consists of using two isotopically labeled glucose compounds to conduct a dual oral glucose tolerance test in rats. This dual isotopic oral glucose tolerance test (DIS-OGTT) can be used to select drug candidates that have "on"- target or have "off"-target effects on oral glucose absorption, hepatic glucose production or glucose disposal. The DIS-OGTT assay utilized intravenously administered [6-13C1-6, 6'-2H2]-glucose and orally administered [U-13C6] glucose to monitor glucose homeostasis. In the experiment, a constant intravenous dose of [6-13C1-6, 6'-2H2] glucose was converted in vivo to a series of [M+1] glucose isotopomers and unlabeled [M] glucose via gluconeogenesis while the orally administered [U-13C6] glucose was converted to a series of [M+3] and [M+2] glucose isotopomers via gluconeogenesis. The detection platform of the assay was based on a negative mode electrospray ionization liquid chromatography tandem mass spectrometry method where the deprotonated glucose anion and its various isotopomers were quantitated in rat plasma using multiple reaction monitoring techniques. The in vivo rat DIS-OGTT assay was a sensitive method for understanding drug candidates underlying postprandial effects on glucose absorption, hepatic glucose production, and insulin controlled glucose disposal. Since glucose derivatization was not required for this assay, a higher sample throughput DIS-OGTT was achieved.


Assuntos
Avaliação Pré-Clínica de Medicamentos , Glucose/química , Glucose/metabolismo , Homeostase , Metabolômica , Animais , Isótopos de Carbono/análise , Isótopos de Carbono/metabolismo , Teste de Tolerância a Glucose , Masculino , Ratos , Ratos Sprague-Dawley , Urânio/análise , Urânio/metabolismo
10.
SLAS Discov ; 22(4): 433-439, 2017 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-28328322

RESUMO

Monoacylglycerol acyltransferase enzymes (MGAT1, MGAT2, and MGAT3) convert monoacylglycerol to diacylglycerol (DAG). MGAT1 and MGAT2 are both implicated in obesity-related metabolic diseases. Conventional MGAT enzyme assays use radioactive substrates, wherein the product of the MGAT-catalyzed reaction is usually resolved by time-consuming thin layer chromatography (TLC) analysis. Furthermore, microsomal membrane preparations typically contain endogenous diacylglycerol acyltransferase (DGAT) from the host cells, and these DGAT activities can further acylate DAG to form triglyceride (TG). Our mass spectrometry (liquid chromatography-tandem mass spectrometry, or LC/MS/MS) MGAT2 assay measures human recombinant MGAT2-catalyzed formation of didecanoyl-glycerol from 1-decanoyl-rac-glycerol and decanoyl-CoA, to produce predominantly 1,3-didecanoyl-glycerol. Unlike 1,2-DAG, 1,3-didecanoyl-glycerol is proved to be not susceptible to further acylation to TG. 1,3-Didecanoyl-glycerol product can be readily solubilized and directly subjected to high-throughput mass spectrometry (HTMS) without further extraction in a 384-well format. We also have established the LC/MS/MS MGAT activity assay in the intestinal microsomes from various species. Our assay is proved to be highly sensitive, and thus it allows measurement of endogenous MGAT activity in cell lysates and tissue preparations. The implementation of the HTMS MGAT activity assay has facilitated the robust screening and evaluation of MGAT inhibitors for the treatment of metabolic diseases.


Assuntos
Diglicerídeos/análise , Inibidores Enzimáticos/análise , Ensaios de Triagem em Larga Escala , N-Acetilglucosaminiltransferases/antagonistas & inibidores , Acil Coenzima A/metabolismo , Animais , Chlorocebus aethiops , Cromatografia Líquida/métodos , Diglicerídeos/antagonistas & inibidores , Diglicerídeos/biossíntese , Cães , Inibidores Enzimáticos/química , Inibidores Enzimáticos/farmacologia , Haplorrinos , Humanos , Intestinos/efeitos dos fármacos , Intestinos/enzimologia , Cinética , Camundongos , Microssomos/efeitos dos fármacos , Microssomos/enzimologia , N-Acetilglucosaminiltransferases/metabolismo , Ratos , Ratos Sprague-Dawley , Proteínas Recombinantes/metabolismo , Espectrometria de Massas em Tandem/métodos
11.
Curr Opin Drug Discov Devel ; 9(1): 47-60, 2006 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-16445117

RESUMO

Moving forward in the 21st century, toxicity remains a significant cause for failures during drug development, and limited correlations exist between preclinical in vitro cellular toxicity and/or in vivo animal toxicity models, and human toxicity. This is due, in part, to the fact that drug candidates generally target multiple tissues rather than single organs, and result in a series of inter-related biochemical events. Drug-induced toxicities, such as idiosyncratic drug reactions, represent a serious complication of drug therapy that needs to be addressed at the drug discovery stage. Many robust toxicity screening methods, however, have been developed, and are described in the literature. Although biochemical mechanisms of drug-induced toxicities are complex, by combining these screening methods into a panel of assays, a risk assessment profile/decision-making guide can be obtained for each drug candidate. The panel of assays covered by this review broadly includes in silico prediction of reactive intermediates, detection and structural characterization of reactive intermediates, covalent binding of reactive intermediates to macromolecules, and the impact of reactive intermediates on cellular functions. Current and future strategies for the proper sequencing of these assays in a drug discovery environment are also discussed.


Assuntos
Desenho de Fármacos , Efeitos Colaterais e Reações Adversas Relacionados a Medicamentos/etiologia , Animais , Proliferação de Células/efeitos dos fármacos , Sobrevivência Celular/efeitos dos fármacos , Simulação por Computador , Inibidores das Enzimas do Citocromo P-450 , Sistema Enzimático do Citocromo P-450/metabolismo , Adutos de DNA/metabolismo , Avaliação Pré-Clínica de Medicamentos , Efeitos Colaterais e Reações Adversas Relacionados a Medicamentos/metabolismo , Inibidores Enzimáticos/análise , Radicais Livres/análise , Humanos , Hepatopatias/etiologia , Dose Máxima Tolerável , Microssomos Hepáticos/efeitos dos fármacos
12.
J Pharm Biomed Anal ; 41(2): 500-9, 2006 May 03.
Artigo em Inglês | MEDLINE | ID: mdl-16386397

RESUMO

The pharmacokinetics and drug disposition of 14C 1-[3-[[4-[2-(1-methylethoxy)phenyl]-1-piperazinyl]methyl]benzoy]piperidine succinate (RWJ-37796, mazapertine, Mz) have been investigated in male and female Sprague-Dawley rats. Approximately 93% of the orally administered radioactive dose (30 mg/kg) was recovered after 7 days. Fecal elimination accounted for approximately 63% of the dose while urine accounted for 30%. The rate of elimination of 14C Mz was rapid with 81% of the total fecal and 94% of the total urinary radioactivity being excreted within 24 h. There were no significant gender differences in the overall excretion pattern. The maximal plasma concentration of Mz and total radioactivity occurred at 0.5h after dosing and plasma concentrations were consistently higher in female rats. The Mz concentration declined rapidly in plasma with a terminal half-life<2 h. The total radioactive dose in plasma displayed a considerably longer terminal half-life of 9-13 h. Mz and a total of 15 metabolites were isolated and identified in these samples. Unchanged Mz accounted for <5% of the radioactive dose in excreta samples and <8% of the sample in plasma (0-24 h). Metabolites were formed by phenyl hydroxylation, piperidyl oxidation, O-dealkylation, N-dephenylation, oxidative N-debenzylation and glucuronide conjugation.


Assuntos
Antipsicóticos/farmacocinética , Piperazinas/farmacocinética , Administração Oral , Animais , Antipsicóticos/administração & dosagem , Antipsicóticos/urina , Biotransformação , Fezes/química , Feminino , Glucuronídeos/metabolismo , Masculino , Oxirredução , Piperazinas/administração & dosagem , Piperazinas/urina , Ratos , Ratos Sprague-Dawley , Distribuição Tecidual
13.
Eur J Drug Metab Pharmacokinet ; 30(1-2): 75-83, 2005.
Artigo em Inglês | MEDLINE | ID: mdl-16010865

RESUMO

Since drug candidates with low oral systemic exposure may be due to either or both absorption and metabolism factors, determining what factors limit the oral systemic exposure is not always obvious in a single in-vivo pharmacokinetic (PK) assay. A rapid rat in-vivo PK screen where the oxidative drug metabolism has been attenuated using the suicide CYP450 inhibitor aminobenzotriazole (ABT) is described. We have shown that the roles of absorption and metabolism for drug candidates with low oral systemic exposure can be determined by comparing the PK parameters of drug candidates orally administered to non-treated and ABT-treated rats. Propranolol, metoprolol and climetidine are used as model drugs. Propranolol and metoprolol have low oral systemic exposures in rats primarily due to metabolism factors while the oral systemic exposure of climetidine is high in rats. For propranolol and metoprolol, large increases in the systemic exposure of these drugs were observed between non-treated and ABT-treated rats. ABT appeared not to increase or decrease significantly the rate and extent of absorption or metabolism of cimetidine since that oral systemic exposure of non-treated and ABT-treated rats did not significantly change. These experiments suggest that for drug candidates with low systemic exposures in rats an observation of no change in the oral systemic exposure in ABT-treated rats when compared to the non-treated rats imply that absorption (or formulation) factors limit the systemic exposure of the drug while an increase in the systemic exposure in ABT-treated rats imply that metabolism factors limit the systemic exposure. Due to the ease of preparing and interpreting PK data from ABT-treated rats, is suggested that this assay could be used as an alternative to in vivo cannulation assays.


Assuntos
Inibidores das Enzimas do Citocromo P-450 , Inibidores Enzimáticos/farmacologia , Farmacocinética , Triazóis/farmacologia , Absorção , Animais , Área Sob a Curva , Benzimidazóis/farmacocinética , Disponibilidade Biológica , Masculino , Ratos , Ratos Sprague-Dawley
14.
Expert Opin Drug Discov ; 10(8): 901-23, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25952011

RESUMO

INTRODUCTION: The target-based drug discovery process, including target selection, screening, hit-to-lead (H2L) and lead optimization stage gates, is the most common approach used in drug development. The full integration of in vitro and/or in vivo data with in silico tools across the entire process would be beneficial to R&D productivity by developing effective selection criteria and drug-design optimization strategies. AREAS COVERED: This review focuses on understanding the impact and extent in the past 5 years of in silico tools on the various stage gates of the target-based drug discovery approach. EXPERT OPINION: There are a large number of in silico tools available for establishing selection criteria and drug-design optimization strategies in the target-based approach. However, the inconsistent use of in vitro and/or in vivo data integrated with predictive in silico multiparameter models throughout the process is contributing to R&D productivity issues. In particular, the lack of reliable in silico tools at the H2L stage gate is contributing to the suboptimal selection of viable lead compounds. It is suggested that further development of in silico multiparameter models and organizing biologists, medicinal and computational chemists into one team with a single accountable objective to expand the utilization of in silico tools in all phases of drug discovery would improve R&D productivity.


Assuntos
Simulação por Computador , Desenho de Fármacos , Terapia de Alvo Molecular , Animais , Descoberta de Drogas/métodos , Humanos
15.
Eur J Drug Metab Pharmacokinet ; 29(2): 133-43, 2004.
Artigo em Inglês | MEDLINE | ID: mdl-15230342

RESUMO

In a drug discovery environment, reasonable go/no-go human in-vivo pharmacokinetic (PK) decisions must be made in a timely manner with a minimum amount of animal in-vivo or in-vitro data. We have investigated the accuracy of the in-vivo correlation between rat and human for the prediction of the total systemic clearance (CL), the volume of distribution at steady state (Vss), and the half-life (t1/2) using simple allometric scaling techniques. We have shown, using a large diverse set of drugs, that a fixed exponent allometric scaling approach can be used to predict human in-vivo PK parameters CL, Vss and t(1/2) solely from rat in-vivo PK data with acceptable accuracy for making go/no-go decisions in drug discovery. Human in-vivo PK predictions can be obtained using the simple allometric scaling relationships CL(Human) approximately = 40 CL(Rat) (L/hr), Vss(Human) approximately = 200 Vss(Rat) (L), and t1/2(Human) approximately = 4 t1/2(Rat) (hr). The average fold error for human CL predictions for N = 176 drugs was 2.25 with 79% of the drugs having a fold error less than 3. The average fold error for human Vss predictions for N = 144 drugs was 1.85 with 84% of the drugs having a fold error less than 3. The average fold error for human t1/2 predictions for N = 145 drugs was 2.05 with 76% of the drugs having a fold error less than 3. Using these simple allometric relationships, the sorting of drug candidates into a low/medium/high/very high human classification scheme was also possible from rat data. Since these simple allometric relationships between rat and human CL, Vss, and t1/2 are reasonably accurate, easy to remember and simple to calculate, these equations should be useful for making early go/no-go in-vivo human PK decisions for drug discovery candidates.


Assuntos
Desenho de Fármacos , Farmacocinética , Algoritmos , Animais , Meia-Vida , Humanos , Valor Preditivo dos Testes , Ratos , Análise de Regressão , Especificidade da Espécie
16.
Methods Mol Biol ; 1015: 251-61, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23824861

RESUMO

Metabolism catalyzed by the cytochrome P450 enzymes (CYPs) represents the most important pathway for drug metabolism and elimination in humans. Identification of the CYPs responsible for metabolism of existing and novel drugs is critical for the prediction of adverse reactions caused by drug-drug interactions or individual genetic polymorphism. An integrated approach is described for CYP-mediated metabolic reaction phenotyping using both recombinant enzymes and human liver microsomes in combination of selective inhibitors or inhibitory antibodies. The in vitro method described includes screening of recombinant CYPs for metabolic activity, chemical inhibition or antibody neutralization, and correlation analysis with isoform-selective marker activities. The primary focus is on identification of the most common enzymes including CYP1A2, 2C9, 2C19, 2D6, and 3A4, although the same strategy could potentially be used for identification of other isoforms.


Assuntos
Hidrocarboneto de Aril Hidroxilases/genética , Citocromo P-450 CYP1A2/genética , Citocromo P-450 CYP2D6/genética , Citocromo P-450 CYP3A/genética , Citocromo P-450 CYP2C19 , Citocromo P-450 CYP2C9 , Humanos , Hidroxilação , Técnicas In Vitro , Inativação Metabólica/genética , Microssomos Hepáticos/enzimologia , Polimorfismo de Nucleotídeo Único
18.
Curr Top Med Chem ; 12(11): 1291-7, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22571791

RESUMO

Various CYP time-dependent inhibition (TDI) assays have been widely implemented in drug discovery and development which has led to great success in positively identifying compounds with mechanism-base inhibition liability. However, drug-drug interaction (DDI) predictions by various in-silico models utilizing kinetic parameters obtained from TDI assays have met with significant challenges including questionable kinetic data, over-simplified in-vitro models and unreliable mathematic algorithms. Although significant efforts have been made to standardize the TDI assay and refine mathematical models, recent evaluation studies have revealed that the kinetic parameters of TDI, the most important in-vitro data required by all DDI prediction models, are significantly impacted by a variety of experimental variables including microsomal protein concentration, metabolic stability, CYP-specific probes, and post-incubation time. This review attempts to provide medicinal chemists a brief overview on the current status of TDI assays, determination of kinetic parameters and in silico DDI predictions with emphasis on the complexity of the TDI kinetics and limitations of current in-vitro models and DDI prediction methodologies.


Assuntos
Inibidores das Enzimas do Citocromo P-450 , Inibidores Enzimáticos/farmacologia , Animais , Sistema Enzimático do Citocromo P-450/metabolismo , Descoberta de Drogas , Interações Medicamentosas , Inibidores Enzimáticos/síntese química , Inibidores Enzimáticos/química , Humanos , Cinética , Relação Estrutura-Atividade , Fatores de Tempo
19.
Curr Top Med Chem ; 12(11): 1282-90, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22571790

RESUMO

A major strategy used in drug design is the inhibition of enzyme activity. The ability to accurately measure the concentration of the inhibitor which is required to inhibit a given biological or biochemical function by half is extremely important in ranking compounds. Since the concept of the half maximal inhibitory concentration (IC(50)) is used extensively for studying reversible inhibition enzymatic reactions, it is important to clearly understand the experimental design and the mathematical modeling techniques used to generate IC(50) values. The most important part of the experimental design is to measure the rate of production of [P] during the linear phase of the time course of the reaction and to prove that the enzyme-catalyzed reaction is reversible. The most important part of the mathematical modeling is to select the correct model and to have a firm understanding on how to handle outliers in the data. These topics are discussed in greater detail along with a discussion on how much quantitative and mechanistic information can be reasonably deduced from an experiment.


Assuntos
Ciclo-Oxigenase 1/metabolismo , Ciclo-Oxigenase 2/metabolismo , Inibidores Enzimáticos/farmacologia , Animais , Biocatálise , Relação Dose-Resposta a Droga , Desenho de Fármacos , Inibidores Enzimáticos/síntese química , Inibidores Enzimáticos/química , Humanos , Concentração Inibidora 50
20.
Curr Top Med Chem ; 12(11): 1298-308, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22571792

RESUMO

Increasing pressure on the pharmaceutical industry to reduce cost and focus internal resources on "high value" activities is driving a trend to outsource traditionally "in-house" drug discovery activities. Compound collections are typically viewed as drug discovery's "crown jewels"; however, in late 2007, Johnson & Johnson Pharmaceutical Research & Development (J PRD) took a bold step to move their entire North American compound inventory and processing capability to an external third party vendor. The authors discuss the combination model implemented, that of local compound logistics site support with an outsourced centralized processing center. Some of the lessons learned over the past five years were predictable while others were unexpected. The substantial cost savings, improved local service response and flexible platform to adjust to changing business needs resulted. Continued sustainable success relies heavily upon maintaining internal headcount dedicated to vendor management, an open collaboration approach and a solid information technology infrastructure with complete transparency and visibility.


Assuntos
Descoberta de Drogas/organização & administração , Indústria Farmacêutica/organização & administração , Preparações Farmacêuticas , Descoberta de Drogas/economia , Descoberta de Drogas/normas , Indústria Farmacêutica/economia , Indústria Farmacêutica/normas , Peso Molecular , Preparações Farmacêuticas/economia , Preparações Farmacêuticas/normas
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