Competing endogenous RNA interplay in cancer: mechanism, methodology, and perspectives.

Competing endogenous RNAs (ceRNAs) refer to RNA transcripts, such as mRNAs, non-coding RNAs, pseudogene transcripts, and circular RNAs, that can regulate each other by competing for the same pool of miRNAs. ceRNAs involve in the pathogenesis of several common cancers such as prostate cancer, liver cancer, breast cancer, lung cancer, gastric cancer, endometrial cancer, and so on. ceRNA activity is determined by factors such as miRNA/ceRNA abundance, ceRNAs binding affinity to miRNAs, RNA editing, and RNA-binding proteins. The alteration of any of these factors may lead to ceRNA network imbalance and thus contribute to cancer initiation and progression. There are generally three steps in ceRNA research conductions: ceRNA prediction, ceRNA validation, and ceRNA functional investigation. Deciphering ceRNA interplay in cancer provides new insight into cancer pathogenesis and opportunities for therapy exploration. In this review, we try to give readers a concise and reliable illustration on the mechanism, functions, research approaches, and perspective of ceRNA in cancer.

Nutrient content and resorption efficiency of leaves of broad-leaved trees along altitudes in Wuyi Mountains, China.

To reveal the variation of leaf nutrient utilization strategies with altitude gradient in subtropical mountain broadleaved trees, 44 species of broadleaved trees at different altitudes (1400, 1600 and 1800 m) in Wuyi Mountains were selected to measure nutrient content, stoichiometric ratio, and nutrient resorption efficiency of green and senescent leaves, and analyzed their allometric growth relationships. The results showed that nitrogen (N) and phosphorus (P) contents in green leaves were significantly higher than those in senescent leaves, which increased with the increases of altitude. The average values of phosphorus resorption efficiency (PRE) and nitrogen resorption efficiency (NRE) were 48.3% and 34.9%, respectively. PRE was significantly higher than NRE. There was no significant difference in nutrient resorption efficiency with altitude. NRE had positive isokinetic growth with and mature leaf N content at low altitude (1400 m) and negative allometry growth with senescent leaf N content at high altitude (1800 m). PRE and N and P contents of senescent leaves had negative isokinetic growth at low altitude (1400 m) and negative allometry growth at high altitudes (1600 and 1800 m). PRE-NRE allometric growth index was 0.95 at each altitude. The nutrient contents of green and senescent leaves increased with the increases of altitude, but altitude did not affect nutrient resorption efficiency. Plants preferred to re-absorbed P from senescent leaves. Nutrient resorption efficiency of leaves at high altitude affected the nutrient status of senescent leaves.

[Identification of the potential distribution area of Cunninghamia lanceolata in China under climate change based on the MaxEnt model]. / 基于MaxEnt模型预测气候变化下杉木在中国的潜在地理分布.

Based on the distribution records of Cunninghamia lanceolata, we used the maximum Entropy (MaxEnt) model and geographic information system (GIS) methods, combined with environmental factors such as climate and terrain, to predict the potential distribution areas suitable for C. lanceolata under current and future climate scenarios. The results showed that annual precipitation was the most important factor driving the distribution of C. lanceolata. Under the current climate scenario, the total area of suitable for C. lanceolata growth was about 3.28 million km2, accounting for about 34.5% of the total land area of China. Among all the suitable areas, the lowly, intermediately, and highly suitable areas accounted for 18.3%, 29.7% and 52.0% of the total, respectively. Under future climate scenarios, the suitable area of C. lanceolata would increase, showing a clear trend of northward expansion in China. A concentrated and contiguous distribution region highly suitable for C. lanceolata would appear in the humid subtropical areas of southern China. The model was tested by the receiver operating characteristic curve (ROC). The average area under the curve of ROC of the training set was 0.91, showing high reliability.

[Effects of short-term combined application of ammonium nitrogen and nitrate nitrogen on the growth and leaf traits of Machilus pauhoi seedlings]. / çŸ­æœŸé“µæ€æ°®ä¸Žç¡æ€æ°®é æ–½å¯¹åˆ¨èŠ±æ¥ å¹¼è‹—ç”Ÿé•¿åŠå¶ç‰‡æ€§çŠ¶çš„å½±å“.

Trees are characterized with selective absorption of different forms of nitrogen. Ammonium nitrogen (NH4+-N) and nitrate nitrogen (NO3--N) are the main forms of nitrogen for plant absorption. We examined the differences of absorption between NH4+-N and NO3--N for 1-year-old Machilus pauhoi seedlings planted in local hilly red soil in a pot experiment. A controlled experiment with 7 different NH4+-N/NO3--N treatments was conducted, to study the effects of nitrogen forms and different NH4+-N/NO3--N ratios on the growth and leaf traits of M. pauhoi seedlings. The results showed that there were no significant differences in the relative growth rate of ground diameter (GD), plant height (TH), and biomass (RGR) of M. pauhoi seedlings with different NH4+-N/NO3--N ratios for four months, but these parameters were relatively high under the treatment of NH4+-N:NO3--N=5:5. The seedlings of M. pauhoi didn't show obvious preference for NH4+-N and NO3--N in short term. The extremely low NH4+-N/NO3--N ratio application was unsuitable for their growth. Different NH4+-N/NO3--N application had significant effects on leaf area (LA), specific leaf area (SLA), leaf dry matter content (LDMC), leaf relative water content (LRWC), net photosynthetic rate (Pn), intercellular CO2 concentration (Ci), water use efficiency (WUE), and photosynthetic nitrogen use efficiency (PNUE). M. pauhoi seedlings under the treatment of NH4+-N:NO3--N=1:9 had the highest LA, SLA, Pn, WUE and PNUE. However, the seedlings under the treatment of NH4+-N:NO3--N=9:1 had the lowest LDMC, leaf tissue density (LTD), LRWC and Ci. Different NH4+-N/NO3--N combined application did not affect leaf nitrogen content (LN) and leaf phosphorus content (LP), which were highest under the treatment of NH4+-N:NO3--N=5:5. Across different NH4+-N/NO3--N combined treatments, GD, TH, and RGR were significantly negatively correlated with SLA, while both GD and RGR were significantly negatively correlated with PNUE. Our results could provide theoretical basis for precise nutrient management and high-efficiency cultivation techniques during the seedling stage of the M. pauhoi.

[Effects of combined nitrogen and phosphorus addition on fine root traits of young Machilus pauhoi forest]. / æ°®ç£·é æ–½å¯¹åˆ¨èŠ±æ¥ å¹¼æž—ç»†æ ¹æ€§çŠ¶çš„å½±å“.

Both nitrogen (N) and phosphorus (P) are the main limiting elements for plant growth in terrestrial ecosystems. Fine roots play a critical role in plant growth. To reveal the effects of combined N and P addition on fine root traits of Machilus pauhoi, we performed a field N and P addition experiment in the midmonth from April to September in 2016 and 2017 in a 3-year M. pauhoi forest (N and P supply ratios were 8:1, 10:1, 12:1, 15:1). Both fine root morphological traits (specific root length, specific root area, average diameter, root tissue density) and stoichiometric traits (total carbon content, total nitogen content and carbon-nitrogen ratio) were analyzed. The results showed that the effects of combined application of N and P on fine root raits varied with seasons. In June, fertilization significantly increased specific root area, total nitrogen content and specific root length of 0-1 mm fine root, but decreased root tissuse density, carbon-nitrogen ratio and average diameter of 0-1 mm root. The most obvious change of fine root traits in June was found under the treatment with a N and P supply ratio of 12:1. In December, combined N and P addition significantly increased root tissue density, total nitrogen content, carbon-nitrogen ratio as well as fine root biomass with the diameter of 0-1 mm. The results of principal component analysis showed that different N and P supply ratios exerted different effects on the relationships among fine root traits. Fine root traits were distributed at both ends of Axis 1 when treated with 12:1 N:P, while distributed at Axis 1 and Axis 2 under other treaments. There was a significant negative correlation between fine root average diameter variation and the relative plant growh rate. The relationship among fine root traits, and between fine root traits and the relative growth rate of plant biomass were optimally coordinated at the treament with a N:P ratio of 12:1.

[Soil enzyme stoichiometry revealed the changes of soil microbial carbon and phosphorus limitation along an elevational gradient in a Pinus taiwanensis forest of Wuyi Mountains, Southeast China]. / åœŸå£¤é ¶è®¡é‡æ­ç¤ºäº†æ­¦å¤·å±±é»„å±±æ¾æž—åœŸå£¤å¾®ç”Ÿç‰©æ²¿æµ·æ‹”æ¢¯åº¦çš„ç¢³ç£·é™åˆ¶å˜åŒ–.

Understanding changes in soil enzyme activities and ecoenzymatic stoichiometry is important for assessing soil nutrient availability and microbial nutrient limitation in mountain ecosystems. However, the variations of soil microbial nutrient limitation across elevational gradients and its driving factors in subtropical mountain forests are still unclear. In this study, we measured soil properties, microbial biomass, and enzyme activities related to carbon (C), nitrogen (N), and phosphorus (P) cycling in Pinus taiwanensis forests at different altitudes of Wuyi Mountains. By analyzing the enzyme stoichiometric ratio, vector length (VL), and vector angle (VA), the relative energy and nutrient limitation of soil microorganisms and its key regulatory factors were explored. The results showed that ß-glucosaminidase (BG) activities increased along the elevational gradient, while the activities of ß-N-acetyl glucosaminidase (NAG), leucine aminopeptidase (LAP), acid phosphatase (AcP) and (NAG+LAP)/microbial biomass carbon (MBC) and AcP/MBC showed the opposite trend. Enzyme C/N, enzyme C/P, enzyme N/P, and VL were enhanced with increasing elevation, while VA decreased, indicating a higher degree of microbial P limitation at low elevation and higher C limitation at high elevation. In addition, our results suggested that dissolved organic carbon and microbial biomass phosphorus are critical factors affecting the relative energy and nutrient limitation of soil microorganisms at different elevations. The results would provide a theoretical basis for the responses of soil carbon, nitrogen, and phosphorus availability as well as the relative limitation of microbial energy and nutrition to elevational gradients, and improve our understanding of soil biogeochemical cycle process in subtropical montane forest ecosystems.

Optimizing the radiomics-machine-learning model based on non-contrast enhanced CT for the simplified risk categorization of thymic epithelial tumors: A large cohort retrospective study.

PURPOSE: This study aimed to establish and compare the radiomics machine learning (ML) models based on non-contrast enhanced computed tomography (NECT) and clinical features for predicting the simplified risk categorization of thymic epithelial tumors (TETs). EXPERIMENTAL DESIGN: A total of 509 patients with pathologically confirmed TETs from January 2009 to May 2018 were retrospectively enrolled, consisting of 238 low-risk thymoma (LRT), 232 high-risk thymoma (HRT), and 39 thymic carcinoma (TC), and were divided into training (n = 433) and testing cohorts (n = 76) according to the admission time. Volumes of interest (VOIs) covering the whole tumor were manually segmented on preoperative NECT images. A total of 1218 radiomic features were extracted from the VOIs, and 4 clinical variables were collected from the hospital database. Fourteen ML models, along with varied feature selection strategies, were used to establish triple-classification models using the radiomic features (radiomic models), while clinical-radiomic models were built after combining with the clinical variables. The diagnostic accuracy, sensitivity, specificity, and the area under the receiver operating characteristic curve (AUC) of radiologist assessment, the radiomic and clinical-radiomic models were evaluated on the testing cohort. RESULTS: The Support Vector Machine (SVM) clinical-radiomic model demonstrated the highest AUC of 0.841 (95% CI 0.820 to 0.861) on the cross-validation result and reached an AUC of 0.844 (95% CI 0.793 to 0.894) in the testing cohort. For the one-vs-rest question of LRT vs HRT + TC, the sensitivity, specificity, and accuracy reached 80.00%, 63.41%, and 71.05%, respectively. For HRT vs LRT + TC, they reached 60.53%, 78.95%, and 69.74%. For TC vs LRT + HRT they reached 33.33%, 98.63%, and 96.05%, respectively. Compared with the radiomic models, superior diagnostic efficacy was demonstrated for most clinical-radiomics models, and the AUC of the Bernoulli Naive Bayes model was significantly improved. Radiologist2's assessment achieved a higher AUC of 0.813 (95% CI: 0.756-0.8761) than other radiologists, which was slightly lower than the SVM clinical-radiomic model. Combined with other evaluation indicators, SVM, as the best ML model, demonstrated the potential of predicting the simplified risk categorization of TETs with superior predictive performance to that of radiologists' assessment. CONCLUSION: Most of the ML models are promising in predicting the simplified TETs risk categorization with superior efficacy to that of radiologists' assessment, especially the SVM models, demonstrated the integration of ML with NECT may be valuable in aiding the diagnosis and treatment planning.

[Nitrogen and phosphorus contents and resorption efficiency of thirty broadleaved woody plants in Yangjifeng, Jiangxi, China.] / æ±Ÿè¥¿é˜³é™ å³°30ç§é˜”å¶æ ‘å¶ç‰‡æ°®ç£·å«é‡åŠå†å¸æ”¶æ•ˆçŽ‡.

Nutrient resorption is an important strategy of nutrient conservation, which reflecting the ability of plants to conserve and utilize nutrients and adapt to environment. To explore the relationship between nutrient content and nutrient resorption of broadleaved woody species of different life forms (i.e., evergreen vs. deciduous), we sampled 30 broadleaved woody species in subtropical region of China located in Yangjifeng National Nature Reserve, Jiangxi Province. The nitrogen (N) and phosphorus (P) concentrations in green and senescent leaves of each species were measured to calculate nutrient resorption efficiency. Furthermore, we analyzed the relationship of leaf nutrient concentration and resorption efficiency for the different life forms. The results showed that N and P concentrations in green leaves were significantly higher in deciduous trees than those in evergreen trees. The P concentrations of senescent leaves in deciduous woody species was significantly higher than that in evergreen woody species. There was no significant difference of N concentration in senescent leaves between evergreen and deciduous species. Nitrogen resorption efficiency (NRE) and phosphorus resorption efficiency (PRE) of the 30 broadleaved woody species were 49.6% and 50.9%, respectively. There were no significant differences between the NRE and PRE of evergreen and deciduous species. NRE and PRE negatively correlated with N and P concentrations in senescent leaves, respectively. Additionally, evergreen and deciduous species showed similar relationships between nutrient resorption efficiency and nutrient concentration in senescent leaves. The sca-ling exponent of allometric relationship between NRE and PRE was 1.18 across all the species. The nutrient resorption efficiency of all the species were affected by the nutrient status of the senesced leaves. Plants examined in this study generally re-absorbed P from senescing leaves than N.

Scaling relationship between tree respiration rates and biomass.

The WBE theory proposed by West, Brown and Enquist predicts that larger plant respiration rate, R, scales to the three-quarters power of body size, M. However, studies on the R versus M relationship for larger plants (i.e. trees larger than saplings) have not been reported. Published respiration rates of field-grown trees (saplings and larger trees) were examined to test this relationship. Our results showed that for larger trees, aboveground respiration rates RA scaled as the 0.82-power of aboveground biomass MA, and that total respiration rates RT scaled as the 0.85-power of total biomass MT, both of which significantly deviated from the three-quarters scaling law predicted by the WBE theory, and which agreed with 0.81-0.84-power scaling of biomass to respiration across the full range of measured tree sizes for an independent dataset reported by Reich et al. (Reich et al. 2006 Nature 439, 457-461). By contrast, R scaled nearly isometrically with M in saplings. We contend that the scaling exponent of plant metabolism is close to unity for saplings and decreases (but is significantly larger than three-quarters) as trees grow, implying that there is no universal metabolic scaling in plants.

[Stoichiometry of carbon, nitrogen and phosphorus and their allometric relationship between leaves and fine roots of three functional tree seedlings.] / 3ç§åŠŸèƒ½åž‹æž—æœ¨å¹¼è‹—å¶ç‰‡ä¸Žç»†æ ¹ç¢³æ°®ç£·åŒ–å­¦è®¡é‡ç‰¹å¾åŠå ¶å¼‚é€Ÿå ³ç³».

We analyzed the contents and stoichiometric ratios of carbon (C), nitrogen (N) and phosphorus (P) in leaves and fine roots of Machilus pauhoi (an evergreen broad-leaved species), Cerasus campanulata (a deciduous broad-leaved species) and Fokienia hodginsii (an evergreen coniferous species) to compare the leaf and root stoichiometry and allometric relationship between different functional groups of trees. There were significant difference in the contents and stoichiometry of C, N and P in the leaves and fine roots among different functional groups. C content, C/N and C/P of the leaves and roots were the highest in M. pauhoi. N content and N/P of the leaves and roots were the highest in C. campanulata, whereas P content of the leaves and roots was the highest in F. hodginsii. The allometric relationship of C, N and P contents as well as their stoichiometric ratios between the leaves and fine roots showed significant difference, which was affected by functional difference. The allometric relationship between C/P and N/P with significantly different allometric indexes in leaves in seedlings of those three tree species, while the isometric relationship between the contents of N and P was found in fine roots. There were significant difference in the C, N and P stoichiometry between the leaves and fine roots. The allometric relationship between leaf C content and root P content in M. pauhoi was detected. C and N contents and C/N, N/P in leaves generally had the allometric or isokinetic relationships with C/N, N/P of fine roots. There were allometric relationships between the leaf C content and the root C, N and P contents in F. hodginsii. It was concluded that nutrient allocation between leaves and fine roots of C. campanulata was more strongly coordinated. The investment strategy of P for leaves and fine roots across those three tree species was similar. The results provided scientific reference for accurate nutrient management at seedling stage and efficient cultivation technique.

[Effects of the current-year shoot stem configuration on leaf biomass in different canopy heights of woody plants in evergreen broad-leaved forest in Jiangxi Province, China.] / æ±Ÿè¥¿å¸¸ç»¿é˜”å¶æž—æœ¨æœ¬æ¤ç‰©ä¸åŒå† å±‚é«˜åº¦å½“å¹´ç”Ÿå°æžèŒŽæž„åž‹å¯¹å¶ç”Ÿç‰©é‡çš„å½±å“.

To investigate the effects of stem configuration on leaf biomass allocation in different organs of the current-year shoots at different canopy heights, relationships of biomass in different organs (i.e., leaves, stems, and twigs) and stem configuration (i.e., stem diameter, length, width/length, stem volume and stem density) were analyzed using the data of 69 woody species from the Yangjifeng Natural Reserve, Jiangxi Provence. Standardized major axis (SMA) was used to explore the regression between biomass and stem configuration. The results showed that there was no significant difference in leaf biomass, stem biomass, twig biomass, stem diameter, stem length, stem width/length and stem volume of current year shoots from upper and lower canopy heights and life forms (i.e., evergreen and deciduous woody plants). Stem density differed significantly in the current year shoots at different heights for both evergreen and deciduous woody species. There were isometric relationships among leaf, stem and total biomass of shoots in different canopy heights and in different life forms. Leaf biomass scaled allometrically with stem diameter and volume, with the scaling exponents being not different significantly among different canopy heights. With respect to the stem configuration of the twigs, stem length, stem width/length and stem density contributed less than 24% to the leaf biomass variation in the current-year shoots. On the contrary, stem diameter and volume had greater effects on leaf biomass of the current-year shoots than stem length, stem width/length and stem density. Canopy heights did not significantly affect the allometric scaling relationships between the stem configuration and leaf biomass of the current-year shoots.

[Allometry between twig size and leaf size of typical bamboo species along an altitudinal gradient]. / ä¸åŒæµ·æ‹”å ¸åž‹ç«¹ç§æžå¶å¤§å°å¼‚é€Ÿç”Ÿé•¿å ³ç³».

To investigate the trade-off between the twig size and leaf size, we measured the total leaf mass, stem mass, individual leaf mass and leafing intensity of typical bamboo’s (Phyllostachys edulis, Indocalamus tessellatus, Oligostachyum oedogonatume, Yushania hirticaulis and Yushania wuyishanensis) twigs at different altitudes in Wuyi Mountain. The results showed that the exponents of the scaling between total leaf mass and stem mass on twigs significantly decreased with increasing altitude for all the five bamboo species. The common scaling exponents of total leaf mass vs. stem mass for P. edulis, I. tessellatus and O. oedogonatum were 0.94, 0.85 and 0.84, respectively. A common slope of 0.79 was observed in total leaf mass vs. stem mass in Y. hirticaulis and Y. wuyishanensis. There was significant negative correlation between individual leaf mass and leafing intensity among bamboo species, except Y. wuyishanensis. A common slope of -1.12 existed between individual leaf mass and leafing intensity for five bamboo species. In conclusion, bamboos at low altitudes tended to support more leaf biomass while preferring to invest more to stem biomass at high altitudes. Although the stem mass investment of different bamboo’s twig increased with altitude, the leafing intensity strategies based on stem mass were determined by the leaf size construction rather than altitude.

[Relationship between the main functional traits of fine root and the rhizosphere soil nutrients of different diameter classes in Zenia insignis plantation.] / ç¿ èšæœ¨äººå·¥æž—ä¸åŒå¾„é˜¶é—´ç»†æ ¹ä¸»è¦åŠŸèƒ½æ€§çŠ¶ä¸Žæ ¹é™ åœŸå£¤å »åˆ†çš„å ³ç³».

Fine roots are sensitive to changes in the soil environment, and play an important role in plant growth and development. To clarify the relationship between fine root traits and rhizosphere soil nutrient characteristics, fine roots of trees belonging to different diameter classes in six-year-old Zenia insignis plantation were sampled. The results showed that root biomass, root length density and root volume density increased with the increases of diameter class. Specific root length and specific root area showed the trend of first rising and then falling and rising again with the increases of diameter class. Root tissue density did not change with diameter class. There were significant diffe-rences in soil pH, water content, total carbon, total phosphorus, ammonium nitrogen, nitrate nitrogen and total available nitrogen contents of rhizosphere soil belonging to different diameter classes. The concentrations of soil total carbon, total nitrogen, nitrate nitrogen and total available nitrogen in the rhizosphere soil of large diameter trees were relatively higher, while the soil water content, total phosphorus and ammonium nitrogen contents of small diameter trees were relatively higher. The concentrations of soil total nitrogen, total carbon, nitrate nitrogen and total available nitrogen were significantly positively correlated with root biomass, root length density and root volume density. The concentrations of soil total phosphorus was significantly positively correlated with root tissue density of fine roots, but negatively correlated with specific root length and specific root area. Soil water content was significantly positively correlated with root biomass and root volume density. Soil pH was significantly positively correlated with the specific root length and specific root area of fine roots, but negatively correlated with root tissue density. Our results provide scientific basis for the selection of excellent germplasm resources of Z. insignis.

MicroRNA-34a promotes iNOS secretion from pulmonary macrophages in septic suckling rats through activating STAT3 pathway.

Pediatric sepsis is frequently a fatal condition and a major cause of death globally. The mortality rate of sepsis remains high despite that the advanced therapeutic methods have been carried out. Our research aims to investigate the potentials of miR-34a in the treatment of pediatric sepsis. Results indicated that miR-34a was up-regulated in Lipopolysaccharide (LPS)-induced pulmonary macrophages and U937 cell lines. In addition, miR-34a silence reduced the production of iNOS through inactivating STAT3 pathway in U937 cell lines and cecal ligation and puncture (CLP)-induced lung tissues. Besides, high expression of iNOS and STAT3 in cells transfected with miR-34a mimic further validated it. Furthermore, in vivo experiment demonstrated that miR-34a silence protected CLP-induced suckling rats from lung injury. All in all, our study demonstrated that miR-34a promoted iNOS secretion from pulmonary macrophages in LPS-induced sepsis suckling rats through activating STAT3 pathway. These results provided a possibility to convert miR-34a into clinical application.

[Short-term effects of nitrogen and water treatments on fine root order morphology of Machilus pauhoi seedlings.] / 短期氮-æ°´å¤„ç†å¯¹åˆ¨èŠ±æ¥ å¹¼è‹—ç»†æ ¹æ ¹åºå½¢æ€çš„å½±å“.

A factorial nitrogen and water addition experiment was carried out with one year-old Machilus pauhoi seedlings from Suichuan County, Jiangxi Province, with six treatments being established: two water levels with 80% and 40% of field moisture holding capacity and three nitrogen addition levels of 0, 50, 100 kg N·hm-2. Specific root length, specific root area, average diameter and tissue density of three fine root orders of M. pauhoi were measured to understand the main and interactive effects of short-term nitrogen addition and drought stress on root characters of M. pauhoi seedlings. The results showed that average fine root diameter and specific root length differed significantly among fine root orders. With the increases of root orders, the average root diameter increased, with the maximum being present in the third order (0.97 mm), but specific root length decreased, with the minimum being present in the third order (238.99 cm·g-1). No significant effects of nitrogen addition on specific root surface area, average fine root diameter, specific root length and root tissue density were observed. There were significant effects of water treatments on average fine root diameter, specific root length and root tissue density. Drought stress significantly increased average diameter of the third order fine roots of seedlings and decreased root tissue density of the first and second order fine roots. Specific root length of the third order fine roots in arid environments was significantly lower than that under the normal water supply condition. There was no interactive effects of nitrogen addition and drought stress on fine root morphology of M. pauhoi.

[Relationships between leaf functional traits of Machilus pauhoi understory seedlings from different provenances and geographical environmental factors.] / ä¸åŒç§æºåˆ¨èŠ±æ¥ æž—ä¸‹å¹¼è‹—å¶åŠŸèƒ½æ€§çŠ¶ä¸Žåœ°ç†çŽ¯å¢ƒçš„å ³ç³».

To understand the adaptation mechanism of Machilus pauhoi seedlings to environmental changes, leaf functional traits of M. pauhoi seedlings from nine provenances, as well as relationships between leaf traits and environmental factors were analyzed. The results showed that leaf functional traits of M. pauhoi seedlings from different provenances showed significant intraspecific variations, with the coefficient of variation ranging from 8.8% to 28.2%. Specific leaf area, leaf relative water content, leaf tissue density and leaf thickness differed significantly among seedlings from different provenances, implying high leaf morphological plasticity. Moreover, leaf tissue density was positively correlated to leaf dry matter content and leaf relative water content, but negatively correlated to specific leaf area and leaf thickness. Specific leaf area showed significantly negative correlations with leaf dry matter content and leaf area. The covariation among those traits examined here indicated that M. pauhoi seedlings could adjust and balance the combination of leaf traits in response to environmental changes. Longitude, latitude, >10 ℃ annual accumulated temperature and mean annual temperature contributed largely to the variation of leaf functional traits of M. pauhoi seedlings. Leaf thickness decreased with the increase of longitude, while leaf dry matter content and leaf relative water content increased with the increase of longitude. Leaf tissue density was positively correlated with longitude and mean annual temperature, suggesting that longitude rather than mean annual temperature had greater effects on it. Leaf area was positively correlated with >10 ℃ annual accumulated temperature and longitude, indicating that annual accumulated temperature rather than longitude had greater effects on the variation of leaf area.

Glioma Grading on Conventional MR Images: A Deep Learning Study With Transfer Learning.

Background: Accurate glioma grading before surgery is of the utmost importance in treatment planning and prognosis prediction. But previous studies on magnetic resonance imaging (MRI) images were not effective enough. According to the remarkable performance of convolutional neural network (CNN) in medical domain, we hypothesized that a deep learning algorithm can achieve high accuracy in distinguishing the World Health Organization (WHO) low grade and high grade gliomas. Methods: One hundred and thirteen glioma patients were retrospectively included. Tumor images were segmented with a rectangular region of interest (ROI), which contained about 80% of the tumor. Then, 20% data were randomly selected and leaved out at patient-level as test dataset. AlexNet and GoogLeNet were both trained from scratch and fine-tuned from models that pre-trained on the large scale natural image database, ImageNet, to magnetic resonance images. The classification task was evaluated with five-fold cross-validation (CV) on patient-level split. Results: The performance measures, including validation accuracy, test accuracy and test area under curve (AUC), averaged from five-fold CV of GoogLeNet which trained from scratch were 0.867, 0.909, and 0.939, respectively. With transfer learning and fine-tuning, better performances were obtained for both AlexNet and GoogLeNet, especially for AlexNet. Meanwhile, GoogLeNet performed better than AlexNet no matter trained from scratch or learned from pre-trained model. Conclusion: In conclusion, we demonstrated that the application of CNN, especially trained with transfer learning and fine-tuning, to preoperative glioma grading improves the performance, compared with either the performance of traditional machine learning method based on hand-crafted features, or even the CNNs trained from scratch.

Incidence and clinical variable inter-relationships of thymic epithelial tumors in northwest China.

BACKGROUND: Thymic epithelial tumors (TETs) are the most common primary thymus tumors, but neither the possible ethnical/regional differences in the incidence of TETs nor the inter-relationships among the clinical variables has been revealed in northwest China. METHODS: A retrospective chart review was performed among pathologically confirmed TET patients from January 2004 to December 2015 in a tertiary general hospital of northwest China and the incidence, clinical features and the inter-relationships among clinical variables were analyzed. RESULTS: A total of 603 pathologically confirmed TETs patients (age range, 5-78 years; 308 males) were enrolled and the most common lesion location was anterior mediastinum (98.5%), among them, 192 (31.8%) had myasthenia gravis (MG). Twenty-six (5.7%), 112 (24.6%), 83 (18.2%), 137 (30.1%), 74 (16.3%), and 23 (5.1%) patients fell into the World Health Organization (WHO) type A, AB, B1, B2, B3 and thymic carcinoma (TC), respectively. The incidence of TETs was slightly higher in the female population and the age group of 40-60 years old. In addition, MG predominantly coexisted with WHO types A-B3 TETs and the TETs with MG were smaller than those without MG. The correct diagnosis rates were 42.3% (77 out of 182), 61.1% (127 out of 208), 89.3% (250 out of 280) and 75.0% (3 out of 4) for chest X-ray, non-contrast computed tomography (CT), contrast CT scan and magnetic resonance imaging (MRI), respectively. CONCLUSIONS: Distinct gender and age differences exist in the incidence of TETs and the A-B3 TETs are closely related with MG. Contrast CT scan plays more important role in diagnosing TETs.

[Construction and optimization of ecological network for nature reserves in Fujian Province, China]. / 福建省自然保护区生态网络的构建与优化.

The nature reserve is very important to biodiversity maintenance. However, due to the urbanization, the nature reserve has been fragmented with reduction in area, leading to the loss of species diversity. Establishing ecological network can effectively connect the fragmented habitats and plays an important role in species conversation. In this paper, based on deciding habitat patches and the landscape cost surface in ArcGIS, a minimum cumulative resistance model was used to simulate the potential ecological network of Fujian provincial nature reserves. The connectivity and importance of network were analyzed and evaluated based on comparison of connectivity indices (including the integral index of connectivity and probability of connectivity) and gravity model both before and after the potential ecological network construction. The optimum ecological network optimization measures were proposed. The result demonstrated that woodlands, grasslands and wetlands together made up the important part of the nature reserve ecological network. The habitats with large area had a higher degree of importance in the network. After constructing the network, the connectivity level was significantly improved. Although interaction strength between different patches va-ried greatly, the corridors between patches with large interaction were very important. The research could provide scientific reference and basis for nature protection and planning in Fujian Province.

[Scaling relationships between twig size and leaf size of Pinus hwangshanensis along an altitudinal gradient in Wuyi Mountains, China.] / æ­¦å¤·å±±ä¸åŒæµ·æ‹”é»„å±±æ¾æžå¶å¤§å°å ³ç³».

To analyze the tradeoff relationship between twigs and leaves, the traits of Pinus hwang-shanensis including leaf area, leaf number, twig length and twig diameter were investigated in Wuyi Mountains along an altitudinal gradient. The results indicated that leaf number, twig length, twig diameter, leafing intensity and twig stem cross-sectional area of P. hwangshanensis increased gra-dually with the increasing altitude, while individual leaf area decreased gradually. Leafing intensity of P. hwangshanensis at different altitudes had significant negative relationships with leaf area. The cross-sectional area of P. hwangshanensis had significant positive relationship with total leaf area. Twig length and twig diameter of P. hwangshanensis correlated negatively with leafing intensity, but positively with leaf area, leaf number and total leaf area. To enhance the competitiveness and resource utilization efficiency, P. hwangshanensis at low altitude tended to have relatively few large leaves on short twigs, and those at high altitude tended to have a large number of small leaves on long twigs. Such tradeoff between twigs and leaves reflected the strategy of resource utilization and the balance of biomass allocation mechanism of P. hwangshanensis responding to the altitudinal change.