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1.
Appl Environ Microbiol ; 88(11): e0027022, 2022 06 14.
Artigo em Inglês | MEDLINE | ID: mdl-35611654

RESUMO

Bacterial symbionts often provide critical functions for their hosts. For example, wood-boring bivalves called shipworms rely on cellulolytic endosymbionts for wood digestion. However, how the relationship between shipworms and their bacterial symbionts is formed and maintained remains unknown. Quorum sensing (QS) often plays an important role in regulating symbiotic relationships. We identified and characterized a QS system found in Teredinibacter sp. strain 2052S, a gill isolate of the wood-boring shipworm Bactronophorus cf. thoracites. We determined that 2052S produces the signal N-decanoyl-l-homoserine lactone (C10-HSL) and that this signal controls the activation of a biosynthetic gene cluster colocated in the symbiont genome that is conserved among all symbiotic Teredinibacter isolates. We subsequently identified extracellular metabolites associated with the QS regulon, including ones linked to the conserved biosynthetic gene cluster, using mass spectrometry-based molecular networking. Our results demonstrate that QS plays an important role in regulating secondary metabolism in this shipworm symbiont. This information provides a step toward deciphering the molecular details of the relationship between these symbionts and their hosts. Furthermore, because shipworm symbionts harbor vast yet underexplored biosynthetic potential, understanding how their secondary metabolism is regulated may aid future drug discovery efforts using these organisms. IMPORTANCE Bacteria play important roles as symbionts in animals ranging from invertebrates to humans. Despite this recognized importance, much is still unknown about the molecular details of how these relationships are formed and maintained. One of the proposed roles of shipworm symbionts is the production of bioactive secondary metabolites due to the immense biosynthetic potential found in shipworm symbiont genomes. Here, we report that a shipworm symbiont uses quorum sensing to coordinate activation of its extracellular secondary metabolism, including the transcriptional activation of a biosynthetic gene cluster that is conserved among many shipworm symbionts. This work is a first step toward linking quorum sensing, secondary metabolism, and symbiosis in wood-boring shipworms.


Assuntos
Bivalves , Gammaproteobacteria , Animais , Bactérias/genética , Bivalves/microbiologia , Gammaproteobacteria/genética , Família Multigênica , Filogenia , Percepção de Quorum , Simbiose
2.
J Nat Prod ; 85(3): 479-484, 2022 03 25.
Artigo em Inglês | MEDLINE | ID: mdl-35196451

RESUMO

Bacteria use small molecules to impose strict regulation over the acquisition, uptake, and sequestration of transition metal ions. Low-abundance nutrient metals, such as Fe(III), need to be scavenged from the environment by high-affinity chelating molecules called siderophores. Conversely, metal ions that become toxic at high concentrations need to be sequestered and detoxified. Often, bacteria produce a suite of compounds that bind various metal ions at different affinities in order to maintain homeostasis. Turnerbactin, a triscatecholate siderophore isolated from the intracellular shipworm symbiont Teredinibacter turnerae T7901, is responsible for iron regulation and uptake. Herein, another series of compounds are described that complex with iron, copper, and molybdenum in solution. Teredinibactins belong to a class of metal-binding molecules that utilize a phenolate-thiazoline moiety in the coordination of metal ions. In contrast to other compounds in this class, such as yersiniabactin, the phenyl ring is decorated with a 2,4-dihydroxy-3-halo substitution pattern. UV-vis absorption spectroscopy based titration experiments with CuCl2 show the formation of an intermediate complex at substoichiometric concentrations and conversion to a copper-bound complex at 1:1 molar equiv.


Assuntos
Compostos Férricos , Sideróforos , Bactérias/metabolismo , Transporte Biológico , Ferro/metabolismo , Sideróforos/química
3.
J Nat Prod ; 83(4): 1249-1257, 2020 04 24.
Artigo em Inglês | MEDLINE | ID: mdl-32186874

RESUMO

Calcium homeostasis is implicated in some cancers, leading to the possibility that selective control of calcium might lead to new cancer drugs. On the basis of this idea, we designed an assay using a glioblastoma cell line and screened a collection of 1000 unique bacterial extracts. Isolation of the active compound from a hit extract led to the identification of boholamide A (1), a 4-amido-2,4-pentadieneoate (APD)-class peptide. Boholamide A (1) applied in the nanomolar range induces an immediate influx of Ca2+ in glioblastoma and neuronal cells. APD-class natural products are hypoxia-selective cytotoxins that primarily target mitochondria. Like other APD-containing compounds, 1 is hypoxia selective. Since APD natural products have received significant interest as potential chemotherapeutic agents, 1 provides a novel APD scaffold for the development of new anticancer compounds.


Assuntos
Antineoplásicos/farmacologia , Produtos Biológicos/farmacologia , Cálcio/metabolismo , Citotoxinas/farmacologia , Depsipeptídeos/farmacologia , Antineoplásicos/química , Antineoplásicos/isolamento & purificação , Produtos Biológicos/química , Produtos Biológicos/isolamento & purificação , Cálcio/química , Citotoxinas/química , Depsipeptídeos/química , Depsipeptídeos/isolamento & purificação , Hipóxia/fisiopatologia , Estrutura Molecular , Neoplasias
4.
Mar Drugs ; 18(12)2020 Dec 20.
Artigo em Inglês | MEDLINE | ID: mdl-33419303

RESUMO

The bioactivity-guided purification of the culture broth of the shipworm endosymbiont Teredinibacter turnerae strain 991H.S.0a.06 yielded a new fatty acid, turneroic acid (1), and two previously described oxylipins (2-3). Turneroic acid (1) is an 18-carbon fatty acid decorated by a hydroxy group and an epoxide ring. Compounds 1-3 inhibited bacterial biofilm formation in Staphylococcus epidermidis, while only 3 showed antimicrobial activity against planktonic S. epidermidis. Comparison of the bioactivity of 1-3 with structurally related compounds indicated the importance of the epoxide moiety for selective and potent biofilm inhibition.


Assuntos
Biofilmes/efeitos dos fármacos , Gammaproteobacteria , Oxilipinas/farmacologia , Simbiose/efeitos dos fármacos , Animais , Biofilmes/crescimento & desenvolvimento , Bivalves , Gammaproteobacteria/química , Testes de Sensibilidade Microbiana/métodos , Oxilipinas/isolamento & purificação , Simbiose/fisiologia
5.
Proc Natl Acad Sci U S A ; 114(18): E3652-E3658, 2017 05 02.
Artigo em Inglês | MEDLINE | ID: mdl-28416684

RESUMO

The "wooden-steps" hypothesis [Distel DL, et al. (2000) Nature 403:725-726] proposed that large chemosynthetic mussels found at deep-sea hydrothermal vents descend from much smaller species associated with sunken wood and other organic deposits, and that the endosymbionts of these progenitors made use of hydrogen sulfide from biogenic sources (e.g., decaying wood) rather than from vent fluids. Here, we show that wood has served not only as a stepping stone between habitats but also as a bridge between heterotrophic and chemoautotrophic symbiosis for the giant mud-boring bivalve Kuphus polythalamia This rare and enigmatic species, which achieves the greatest length of any extant bivalve, is the only described member of the wood-boring bivalve family Teredinidae (shipworms) that burrows in marine sediments rather than wood. We show that K. polythalamia harbors sulfur-oxidizing chemoautotrophic (thioautotrophic) bacteria instead of the cellulolytic symbionts that allow other shipworm species to consume wood as food. The characteristics of its symbionts, its phylogenetic position within Teredinidae, the reduction of its digestive system by comparison with other family members, and the loss of morphological features associated with wood digestion indicate that K. polythalamia is a chemoautotrophic bivalve descended from wood-feeding (xylotrophic) ancestors. This is an example in which a chemoautotrophic endosymbiosis arose by displacement of an ancestral heterotrophic symbiosis and a report of pure culture of a thioautotrophic endosymbiont.


Assuntos
Bactérias/metabolismo , Bivalves/microbiologia , Crescimento Quimioautotrófico/fisiologia , Simbiose/fisiologia , Madeira/metabolismo , Animais , Madeira/microbiologia
6.
Proc Biol Sci ; 286(1905): 20190434, 2019 06 26.
Artigo em Inglês | MEDLINE | ID: mdl-31213180

RESUMO

Shipworms are a group of wood-boring and wood-feeding bivalves of extraordinary economic, ecological and historical importance. Known in the literature since the fourth century BC, shipworms are both destructive pests and critical providers of ecosystem services. All previously described shipworms are obligate wood-borers, completing all or part of their life cycle in wood and most are thought to use wood as a primary source of nutrition. Here, we report and describe a new anatomically and morphologically divergent species of shipworm that bores in carbonate limestone rather than in woody substrates and lacks adaptations associated with wood-boring and wood digestion. The species is highly unusual in that it bores by ingesting rock and is among the very few known freshwater rock-boring macrobioeroders. The calcareous burrow linings of this species resemble fossil borings normally associated with bivalve bioerosion of wood substrates (ichnospecies Teredolites longissimus) in marginal and fully marine settings. The occurrence of this newly recognized shipworm in a lithic substrate has implications for teredinid phylogeny and evolution, and interpreting palaeoenvironmental conditions based on fossil bioerosion features.


Assuntos
Bivalves/fisiologia , Animais , Ecossistema , Água Doce , Filipinas , Madeira
7.
Int J Syst Evol Microbiol ; 69(3): 638-644, 2019 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-30540238

RESUMO

A chemolithoautotrophic sulfur-oxidizing, diazotrophic, facultatively heterotrophic, endosymbiotic bacterium, designated as strain 2141T, was isolated from the gills of the giant shipworm Kuphus polythalamius (Teredinidae: Bivalvia). Based on its 16S rRNA sequence, the endosymbiont falls within a clade that includes the as-yet-uncultivated thioautotrophic symbionts of a marine ciliate and hydrothermal vent gastropods, uncultivated marine sediment bacteria, and a free-living sulfur-oxidizing bacterium ODIII6, all of which belong to the Gammaproteobacteria. The endosymbiont is Gram-negative, rod-shaped and has a single polar flagellum when grown in culture. This bacterium can be grown chemolithoautotrophically on a chemically defined medium supplemented with either hydrogen sulfide, thiosulfate, tetrathionate or elemental sulfur. The closed-circular genome has a DNA G+C content of 60.1 mol% and is 4.79 Mbp in size with a large nitrogenase cluster spanning nearly 40 kbp. The diazotrophic capability was confirmed by growing the strain on chemolithoautotrophic thiosulfate-based medium without a combined source of fixed nitrogen. The bacterium is also capable of heterotrophic growth on organic acids such as acetate and propionate. The pH, temperature and salinity optima for chemolithoautotrophic growth on thiosulfate were found to be 8.5, 34 °C and 0.2 M NaCl, respectively. To our knowledge, this is the first report of pure culture of a thioautotrophic animal symbiont. The type strain of Thiosocius teredinicola is PMS-2141T.STBD.0c.01aT (=DSM 108030T).


Assuntos
Bivalves/microbiologia , Gammaproteobacteria/classificação , Brânquias/microbiologia , Filogenia , Animais , Técnicas de Tipagem Bacteriana , Composição de Bases , Crescimento Quimioautotrófico , DNA Bacteriano/genética , Ácidos Graxos/química , Gammaproteobacteria/isolamento & purificação , Sedimentos Geológicos/microbiologia , Oxirredução , Filipinas , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Enxofre/metabolismo , Tiossulfatos
8.
J Nat Prod ; 82(4): 1024-1028, 2019 04 26.
Artigo em Inglês | MEDLINE | ID: mdl-30793902

RESUMO

Three new pyoluteorin analogues, mindapyrroles A-C (1-3), were purified from Pseudomonas aeruginosa strain 1682U.R.0a.27, a gill-associated bacterium isolated from the tissue homogenate of the giant shipworm Kuphus polythalamius. Mindapyrroles B and C inhibit the growth of multiple pathogenic bacteria, with mindapyrrole B (2) showing the most potent antimicrobial activity and widest selectivity index over mammalian cells. Preliminary structure-activity relationship analysis showed that dimerization of the pyoluteorin moiety through a C-C linkage is detrimental to the antimicrobial activity, but addition of an aerugine unit in the methylene bridge is favorable for both the antimicrobial activity and selectivity index.


Assuntos
Bivalves/química , Pseudomonas aeruginosa/química , Pirróis/isolamento & purificação , Animais , Anti-Infecciosos/farmacologia , Pirróis/química , Pirróis/farmacologia
9.
Mar Drugs ; 17(9)2019 Sep 16.
Artigo em Inglês | MEDLINE | ID: mdl-31527453

RESUMO

Renieramycin M (RM) is a KCN-stabilized tetrahydroisoquinoline purified from the blue sponge Xestospongia sp., with nanomolar IC50s against several cancer cell lines. Our goal is to evaluate its combination effects with doxorubicin (DOX) in estrogen receptor positive MCF-7 breast cancer cells. MCF-7 cells were treated simultaneously or sequentially with various combination ratios of RM and DOX for 72 h. Cell viability was determined using the MTT assay. Synergism or antagonism was determined using curve-shift analysis, combination index method and isobologram analysis. Synergism was observed with pharmacologically achievable concentrations of DOX when administered simultaneously, but not sequentially. The IC95 values of RM and DOX after combination were reduced by up to four-fold and eight-fold, respectively. To gain insights on the mechanism of synergy, real-time profiling, cell cycle analysis, apoptosis assays, and transcriptome analysis were conducted. The combination treatment displayed a similar profile with DNA-damaging agents and induced a greater and faster cell killing. The combination treatment also showed an increase in apoptosis. DOX induced S and G2/M arrest while RM did not induce significant changes in the cell cycle. DNA replication and repair genes were downregulated commonly by RM and DOX. p53 signaling and cell cycle checkpoints were regulated by DOX while ErbB/PI3K-Akt, integrin and focal adhesion signaling were regulated by RM upon combination. Genes involved in cytochrome C release and interferon gamma signaling were regulated specifically in the combination treatment. This study serves as a basis for in vivo studies and provides a rationale for using RM in combination with other anticancer drugs.


Assuntos
Protocolos de Quimioterapia Combinada Antineoplásica/farmacologia , Neoplasias da Mama/tratamento farmacológico , Doxorrubicina/farmacologia , Tetra-Hidroisoquinolinas/farmacologia , Xestospongia/química , Animais , Protocolos de Quimioterapia Combinada Antineoplásica/uso terapêutico , Apoptose/efeitos dos fármacos , Neoplasias da Mama/genética , Neoplasias da Mama/patologia , Sobrevivência Celular/efeitos dos fármacos , Reparo do DNA/efeitos dos fármacos , Replicação do DNA/efeitos dos fármacos , Doxorrubicina/uso terapêutico , Resistencia a Medicamentos Antineoplásicos/efeitos dos fármacos , Resistencia a Medicamentos Antineoplásicos/genética , Ensaios de Seleção de Medicamentos Antitumorais , Sinergismo Farmacológico , Feminino , Perfilação da Expressão Gênica , Regulação Neoplásica da Expressão Gênica/efeitos dos fármacos , Humanos , Células MCF-7 , Transdução de Sinais/efeitos dos fármacos , Tetra-Hidroisoquinolinas/isolamento & purificação , Tetra-Hidroisoquinolinas/uso terapêutico , Transcriptoma/efeitos dos fármacos
10.
Biochemistry ; 56(45): 6051-6060, 2017 11 14.
Artigo em Inglês | MEDLINE | ID: mdl-29090914

RESUMO

The turripeptide ubi3a was isolated from the venom of the marine gastropod Unedogemmula bisaya, family Turridae, by bioassay-guided purification; both native and synthetic ubi3a elicited prolonged tremors when injected intracranially into mice. The sequence of the peptide, DCCOCOAGAVRCRFACC-NH2 (O = 4-hydroxyproline) follows the framework III pattern for cysteines (CC-C-C-CC) in the M-superfamily of conopeptides. The three-dimensional structure determined by NMR spectroscopy indicated a disulfide connectivity that is not found in conopeptides with the cysteine framework III: C1-C4, C2-C6, C3-C5. The peptide inhibited the activity of the α9α10 nicotinic acetylcholine receptor with relatively low affinity (IC50, 10.2 µM). Initial Constellation Pharmacology data revealed an excitatory activity of ubi3a on a specific subset of mouse dorsal root ganglion neurons.


Assuntos
Conotoxinas/química , Conotoxinas/farmacologia , Caramujo Conus/química , Animais , Cálcio/metabolismo , Células Cultivadas , Conotoxinas/isolamento & purificação , Caramujo Conus/efeitos dos fármacos , Caramujo Conus/genética , Caramujo Conus/crescimento & desenvolvimento , Feminino , Gânglios Espinais/citologia , Gânglios Espinais/efeitos dos fármacos , Gânglios Espinais/metabolismo , Masculino , Camundongos , Camundongos Endogâmicos ICR , Modelos Moleculares , Neurônios/citologia , Neurônios/efeitos dos fármacos , Neurônios/metabolismo , Oócitos/citologia , Oócitos/efeitos dos fármacos , Oócitos/metabolismo , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/farmacologia , Receptores Nicotínicos/metabolismo , Xenopus laevis
11.
Appl Environ Microbiol ; 83(23)2017 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-28986377

RESUMO

Cone snails are biomedically important sources of peptide drugs, but it is not known whether snail-associated bacteria affect venom chemistry. To begin to answer this question, we performed 16S rRNA gene amplicon sequencing of eight cone snail species, comparing their microbiomes with each other and with those from a variety of other marine invertebrates. We show that the cone snail microbiome is distinct from those in other marine invertebrates and conserved in specimens from around the world, including the Philippines, Guam, California, and Florida. We found that all venom ducts examined contain diverse 16S rRNA gene sequences bearing closest similarity to Stenotrophomonas bacteria. These sequences represent specific symbionts that live in the lumen of the venom duct, where bioactive venom peptides are synthesized.IMPORTANCE In animals, symbiotic bacteria contribute critically to metabolism. Cone snails are renowned for the production of venoms that are used as medicines and as probes for biological study. In principle, symbiotic bacterial metabolism could either degrade or synthesize active venom components, and previous publications show that bacteria do indeed contribute small molecules to some venoms. Therefore, understanding symbiosis in cone snails will contribute to further drug discovery efforts. Here, we describe an unexpected, specific symbiosis between bacteria and cone snails from around the world.


Assuntos
Venenos de Moluscos/química , Caramujos/microbiologia , Stenotrophomonas/isolamento & purificação , Stenotrophomonas/fisiologia , Simbiose , Animais , DNA Bacteriano/genética , Microbiota , Venenos de Moluscos/metabolismo , Peptídeos/química , Peptídeos/metabolismo , Filogenia , RNA Ribossômico 16S/genética , Caramujos/classificação , Caramujos/fisiologia , Stenotrophomonas/genética
12.
J Nat Prod ; 80(8): 2360-2370, 2017 08 25.
Artigo em Inglês | MEDLINE | ID: mdl-28745513

RESUMO

Serotonin (5-HT) receptors are important in health and disease, but the existence of 14 subtypes necessitates selective ligands. Previously, the pulicatins were identified as ligands that specifically bound to the subtype 5-HT2B in the 500 nM to 10 µM range and that exhibited in vitro effects on cultured mouse neurons. Here, we examined the structure-activity relationship of 30 synthetic and natural pulicatin derivatives using binding, receptor functionality, and in vivo assays. The results reveal the 2-arylthiazoline scaffold as a tunable serotonin receptor-targeting pharmacophore. Tests in mice show potential antiseizure and antinociceptive activities at high doses without motor impairment.


Assuntos
Produtos Biológicos/isolamento & purificação , Produtos Biológicos/farmacologia , Receptores de Serotonina/química , Receptores de Serotonina/metabolismo , Tiazolidinas/isolamento & purificação , Tiazolidinas/farmacologia , Animais , Ligantes , Camundongos , Estrutura Molecular , Relação Estrutura-Atividade , Tiazolidinas/química , Tiazolidinas/metabolismo
13.
Mol Genet Genomics ; 291(1): 411-22, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26423067

RESUMO

The evolvability of venom components (in particular, the gene-encoded peptide toxins) in venomous species serves as an adaptive strategy allowing them to target new prey types or respond to changes in the prey field. The structure, organization, and expression of the venom peptide genes may provide insights into the molecular mechanisms that drive the evolution of such genes. Conus is a particularly interesting group given the high chemical diversity of their venom peptides, and the rapid evolution of the conopeptide-encoding genes. Conus genomes, however, are large and characterized by a high proportion of repetitive sequences. As a result, the structure and organization of conopeptide genes have remained poorly known. In this study, a survey of the genome of Conus tribblei was undertaken to address this gap. A partial assembly of C. tribblei genome was generated; the assembly, though consisting of a large number of fragments, accounted for 2160.5 Mb of sequence. A large number of repetitive genomic elements consisting of 642.6 Mb of retrotransposable elements, simple repeats, and novel interspersed repeats were observed. We characterized the structural organization and distribution of conotoxin genes in the genome. A significant number of conopeptide genes (estimated to be between 148 and 193) belonging to different superfamilies with complete or nearly complete exon regions were observed, ~60 % of which were expressed. The unexpressed conopeptide genes represent hidden but significant conotoxin diversity. The conotoxin genes also differed in the frequency and length of the introns. The interruption of exons by long introns in the conopeptide genes and the presence of repeats in the introns may indicate the importance of introns in facilitating recombination, evolution and diversification of conotoxins. These findings advance our understanding of the structural framework that promotes the gene-level molecular evolution of venom peptides.


Assuntos
Conotoxinas/genética , Caramujo Conus/genética , Genoma/genética , Sequência de Aminoácidos , Animais , Evolução Molecular , Éxons/genética , Íntrons/genética , Dados de Sequência Molecular , Peptídeos/genética , Filogenia , Alinhamento de Sequência , Análise de Sequência de DNA/métodos , Transcriptoma/genética
14.
Proc Natl Acad Sci U S A ; 110(4): E295-304, 2013 Jan 22.
Artigo em Inglês | MEDLINE | ID: mdl-23288898

RESUMO

Shipworms are marine wood-boring bivalve mollusks (family Teredinidae) that harbor a community of closely related Gammaproteobacteria as intracellular endosymbionts in their gills. These symbionts have been proposed to assist the shipworm host in cellulose digestion and have been shown to play a role in nitrogen fixation. The genome of one strain of Teredinibacter turnerae, the first shipworm symbiont to be cultivated, was sequenced, revealing potential as a rich source of polyketides and nonribosomal peptides. Bioassay-guided fractionation led to the isolation and identification of two macrodioloide polyketides belonging to the tartrolon class. Both compounds were found to possess antibacterial properties, and the major compound was found to inhibit other shipworm symbiont strains and various pathogenic bacteria. The gene cluster responsible for the synthesis of these compounds was identified and characterized, and the ketosynthase domains were analyzed phylogenetically. Reverse-transcription PCR in addition to liquid chromatography and high-resolution mass spectrometry and tandem mass spectrometry revealed the transcription of these genes and the presence of the compounds in the shipworm, suggesting that the gene cluster is expressed in vivo and that the compounds may fulfill a specific function for the shipworm host. This study reports tartrolon polyketides from a shipworm symbiont and unveils the biosynthetic gene cluster of a member of this class of compounds, which might reveal the mechanism by which these bioactive metabolites are biosynthesized.


Assuntos
Antibacterianos/biossíntese , Bivalves/microbiologia , Gammaproteobacteria/metabolismo , Animais , Antibacterianos/química , Antibacterianos/farmacologia , Sequência de Bases , Biotransformação , Ácidos Borônicos/química , Ácidos Borônicos/metabolismo , Celulose/metabolismo , DNA Bacteriano/genética , Evolução Molecular , Gammaproteobacteria/genética , Genoma Bacteriano , Brânquias/microbiologia , Macrolídeos/química , Macrolídeos/metabolismo , Redes e Vias Metabólicas , Estrutura Molecular , Família Multigênica , Mutação , Filogenia , Policetídeo Sintases/genética , Policetídeo Sintases/metabolismo , Policetídeos/química , Policetídeos/metabolismo , Simbiose
15.
Mol Biol Evol ; 31(4): 793-803, 2014 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-24458431

RESUMO

Rafflesia is a genus of holoparasitic plants endemic to Southeast Asia that has lost the ability to undertake photosynthesis. With short-read sequencing technology, we assembled a draft sequence of the mitochondrial genome of Rafflesia lagascae Blanco, a species endemic to the Philippine island of Luzon, with ∼350× sequencing depth coverage. Using multiple approaches, however, we were only able to identify small fragments of plastid sequences at low coverage depth (<2×) and could not recover any substantial portion of a chloroplast genome. The gene fragments we identified included photosynthesis and energy production genes (atp, ndh, pet, psa, psb, rbcL), ribosomal RNA genes (rrn16, rrn23), ribosomal protein genes (rps7, rps11, rps16), transfer RNA genes, as well as matK, accD, ycf2, and multiple nongenic regions from the inverted repeats. None of the identified plastid gene sequences had intact reading frames. Phylogenetic analysis suggests that ∼33% of these remnant plastid genes may have been horizontally transferred from the host plant genus Tetrastigma with the rest having ambiguous phylogenetic positions (<50% bootstrap support), except for psaB that was strongly allied with the plastid homolog in Nicotiana. Our inability to identify substantial plastid genome sequences from R. lagascae using multiple approaches--despite success in identifying and developing a draft assembly of the much larger mitochondrial genome--suggests that the parasitic plant genus Rafflesia may be the first plant group for which there is no recognizable plastid genome, or if present is found in cryptic form at very low levels.


Assuntos
Genoma de Cloroplastos , Magnoliopsida/genética , Evolução Molecular , Mitocôndrias/genética , Fotossíntese/genética , Filogenia , Análise de Sequência de DNA
16.
Am J Physiol Regul Integr Comp Physiol ; 307(6): R634-42, 2014 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-25080496

RESUMO

Dopamine-mediated regulation of Na(+)-K(+)-ATPase activity in the posterior gills of some crustaceans has been reported to be involved in osmoregulation. The dopamine receptors of invertebrates are classified into three groups based on their structure and pharmacology: D1- and D2-like receptors and a distinct invertebrate receptor subtype (INDR). We tested the hypothesis that a D1-like receptor is expressed in the blue crab Callinectes sapidus and regulates Na(+)-K(+)-ATPase activity. RT-PCR, using degenerate primers, showed the presence of D1ßR mRNA in the posterior gill. The blue crab posterior gills showed positive immunostaining for a dopamine D5 receptor (D5R or D1ßR) antibody in the basolateral membrane and cytoplasm. Confocal microscopy showed colocalization of Na(+)-K(+)-ATPase and D1ßR in the basolateral membrane. To determine the effect of D1-like receptor stimulation on Na(+)-K(+)-ATPase activity, intact crabs acclimated to low salinity for 6 days were given an intracardiac infusion of the D1-like receptor agonist fenoldopam, with or without the D1-like receptor antagonist SCH23390. Fenoldopam increased cAMP production twofold and decreased Na(+)-K(+)-ATPase activity by 50% in the posterior gills. This effect was blocked by coinfusion with SCH23390, which had no effect on Na(+)-K(+)-ATPase activity by itself. Fenoldopam minimally decreased D1ßR protein expression (10%) but did not affect Na(+)-K(+)-ATPase α-subunit protein expression. This study shows the presence of functional D1ßR in the posterior gills of euryhaline crabs chronically exposed to low salinity and highlights the evolutionarily conserved function of the dopamine receptors on sodium homeostasis.


Assuntos
Braquiúros/enzimologia , AMP Cíclico/metabolismo , Brânquias/enzimologia , Receptores de Dopamina D5/metabolismo , ATPase Trocadora de Sódio-Potássio/metabolismo , Adaptação Fisiológica , Animais , Braquiúros/efeitos dos fármacos , Braquiúros/genética , Agonistas de Dopamina/farmacologia , Antagonistas de Dopamina/farmacologia , Regulação para Baixo , Brânquias/efeitos dos fármacos , Masculino , Osmorregulação , RNA Mensageiro/metabolismo , Receptores de Dopamina D5/efeitos dos fármacos , Receptores de Dopamina D5/genética , Salinidade , Regulação para Cima
17.
Mol Ecol ; 23(6): 1418-1432, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24765662

RESUMO

Teredinibacter turnerae is a cultivable intracellular endosymbiont of xylotrophic (woodfeeding)bivalves of the Family Teredinidae (shipworms). Although T. turnerae has been isolated from many shipworm taxa collected in many locations, no systematic effort has been made to explore genetic diversity within this symbiont species across the taxonomic and geographical range of its hosts. The mode of symbiont transmission is unknown. Here, we examine sequence diversity in fragments of six genes (16S rRNA, gyrB, sseA, recA, rpoB and celAB) among 25 isolates of T. turnerae cultured from 13 shipworm species collected in 15 locations in the Atlantic, Pacific and Indian Oceans. While 16S rRNA sequences are nearly invariant between all examined isolates (maximum pairwise difference <0.26%), variation between examined protein-coding loci is greater (mean pairwise difference 2.2­5.9%). Phylogenetic analyses based on each protein-coding locus differentiate the 25 isolates into two distinct and well-supported clades. With five exceptions, clade assignments for each isolate were supported by analysis of alleles of each of the five protein-coding loci. These exceptions include (i) putative recombinant alleles of the celAB and gyrB loci in two isolates (PMS-535T.S.1b.3 and T8510), suggesting homologous recombination between members of the two clades; and (ii) evidence for a putative lateral gene transfer event affecting a second locus (recA) in three isolates (T8412, T8503 and T8513). These results demonstrate that T. turnerae isolates do not represent a homogeneous global population. Instead, they indicate the emergence of two lineages that, although distinct, likely experience some level of genetic exchange with each other and with other bacterial species.


Assuntos
Bivalves/microbiologia , Gammaproteobacteria/classificação , Filogenia , Simbiose , Animais , Oceano Atlântico , DNA Bacteriano/genética , Gammaproteobacteria/genética , Gammaproteobacteria/isolamento & purificação , Genes Bacterianos , Variação Genética , Oceano Índico , Oceano Pacífico , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
18.
J Nat Prod ; 77(5): 1224-30, 2014 May 23.
Artigo em Inglês | MEDLINE | ID: mdl-24786728

RESUMO

The griseorhodins belong to a family of extensively modified aromatic polyketides that exhibit activities such as inhibition of HIV reverse transcriptase and human telomerase. The vast structural diversity of this group of polyketides is largely introduced by enzymatic oxidations, which can significantly influence the bioactivity profile. Four new compounds, griseorhodins D-F, were isolated from a griseorhodin producer, Streptomyces sp. CN48+, based upon their enhancement of calcium uptake in a mouse dorsal root ganglion primary cell culture assay. Two of these compounds, griseorhodins D1 and D2, were shown to be identical to the major, previously uncharacterized products of a grhM mutant in an earlier griseorhodin biosynthesis study. Their structures enabled the establishment of a more complete hypothesis for the biosynthesis of griseorhodins and related compounds. The other two compounds, griseorhodins E and F, represent new products of post-polyketide synthase tailoring in griseorhodin biosynthesis and showed significant binding activity in a human dopamine active transporter assay.


Assuntos
Naftoquinonas/isolamento & purificação , Naftoquinonas/farmacologia , Policetídeos/isolamento & purificação , Policetídeos/farmacologia , Streptomyces/química , Animais , Agonistas de Dopamina/química , Agonistas de Dopamina/isolamento & purificação , Humanos , Camundongos , Estrutura Molecular , Complexos Multienzimáticos/metabolismo , Família Multigênica , Naftoquinonas/química , Ressonância Magnética Nuclear Biomolecular , Filipinas , Policetídeo Sintases/metabolismo , Policetídeos/química , Streptomyces/genética , Telomerase/antagonistas & inibidores
19.
Bioorg Med Chem Lett ; 23(17): 4867-9, 2013 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-23880542

RESUMO

The bacterium Gordonia sp. 647W.R.1a.05 was cultivated from the venom duct of the cone snail, Conus circumcisus. The Gordonia sp. organic extract modulated the action potential of mouse dorsal root ganglion neurons. Assay-guided fractionation led to the identification of the new compound circumcin A (1) and 11 known analogs (2-12). Two of these compounds, kurasoin B (7) and soraphinol A (8), were active in a human norepinephrine transporter assay with Ki values of 2575 and 867 nM, respectively. No neuroactivity had previously been reported for compounds in this structural class. Gordonia species have been reproducibly isolated from four different cone snail species, indicating a consistent association between these organisms.


Assuntos
Produtos Biológicos/farmacologia , Caramujo Conus/microbiologia , Álcoois Graxos/farmacologia , Bactéria Gordonia/fisiologia , Potenciais de Ação/efeitos dos fármacos , Animais , Produtos Biológicos/química , Produtos Biológicos/isolamento & purificação , Produtos Biológicos/metabolismo , Células Cultivadas , Álcoois Graxos/química , Álcoois Graxos/isolamento & purificação , Álcoois Graxos/metabolismo , Gânglios Espinais/citologia , Humanos , Camundongos , Neurônios/citologia , Neurônios/efeitos dos fármacos , Proteínas da Membrana Plasmática de Transporte de Norepinefrina/metabolismo , Simbiose
20.
J Cell Sci ; 123(Pt 19): 3357-67, 2010 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-20826466

RESUMO

Wnt proteins are secreted post-translationally modified proteins that signal locally to regulate development and proliferation. The production of bioactive Wnts requires a number of dedicated factors in the secreting cell whose coordinated functions are not fully understood. A screen for small molecules identified inhibitors of vacuolar acidification as potent inhibitors of Wnt secretion. Inhibition of the V-ATPase or disruption of vacuolar pH gradients by diverse drugs potently inhibited Wnt/ß-catenin signaling both in cultured human cells and in vivo, and impaired Wnt-regulated convergent extension movements in Xenopus embryos. WNT secretion requires its binding to the carrier protein wntless (WLS); we find that WLS is ER-resident in human cells and WNT3A binding to WLS requires PORCN-dependent lipid modification of WNT3A at serine 209. Inhibition of vacuolar acidification results in accumulation of the WNT3A-WLS complex both in cells and at the plasma membrane. Modeling predictions suggest that WLS has a lipid-binding ß-barrel that is similar to the lipocalin-family fold. We propose that WLS binds Wnts in part through a lipid-binding domain, and that vacuolar acidification is required to release palmitoylated WNT3A from WLS in secretory vesicles, possibly to facilitate transfer of WNT3A to a soluble carrier protein.


Assuntos
Adenosina Trifosfatases/antagonistas & inibidores , Peptídeos e Proteínas de Sinalização Intracelular/metabolismo , Macrolídeos/farmacologia , Receptores Acoplados a Proteínas G/metabolismo , Vacúolos/metabolismo , Proteínas Wnt/metabolismo , Acilação , Animais , Embrião não Mamífero , Desenvolvimento Embrionário/efeitos dos fármacos , Células HEK293 , Humanos , Concentração de Íons de Hidrogênio , Macrolídeos/isolamento & purificação , Ligação Proteica , Serina/metabolismo , Transdução de Sinais/efeitos dos fármacos , Bibliotecas de Moléculas Pequenas/isolamento & purificação , Vacúolos/química , Proteína Wnt3 , Proteína Wnt3A , Xenopus , Proteínas de Xenopus
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