Rapid online analysis of n-alkanes in gaseous streams via APCI mass spectrometry.

Online monitoring of dynamic chemical processes involving a wide volatility range of hydrocarbon species is challenging due to long chromatographic measurement times. Mass spectrometry (MS) overcomes chromatographic delays. However, the analysis of n-alkane mixtures by MS is difficult because many fragment ions are formed, which leads to overlapping signals of the homologous series. Atmospheric pressure chemical ionization (APCI) is suitable for the analysis of saturated hydrocarbons and is the subject of current research. Still, although APCI is a "soft ionization" technique, fragmentation is typically inevitable. Moreover, it is usually applied for liquid samples, while an application for online gas-phase monitoring is widely unexplored. Here, we present an automated APCI-MS method for an online gas-phase analysis of volatile and semi-volatile n-alkanes. Mass spectra for n-heptane and n-decane reveal [M-H]+, [M-3H]+ and [M-3H+H2O]+ as abundant ions. While [M-H]+ and [M-3H]+ show an excessive fragmentation pattern to smaller CnH2n+1+ and CnH2n-1+ cations, [M-3H+H2O]+ is the only relevant signal within the CnH2n+1O+ ion group, i.e., no chain cleavage is observed. This makes [M-3H+H2O]+ an analyte-specific ion that is suitable for the quantification of n-alkane mixtures. A calibration confirms the linearity of C7 and C10 signals up to concentrations of ~1000-1500 ppm. Moreover, validated concentration profiles are measured for a binary C7/C10 mixture and a five-alkane C7/C10/C12/C14/C20 mixture. Compared to the 40-min sampling interval of the reference gas chromatograph, MS sampling is performed within 5 min and allows dynamic changes to be monitored.

Light-controlled macrocyclization of tetrathiafulvalene with azobenzene: designing an optoelectronic molecular switch.

Macrocyclization between tetrathiafulvalene (TTF) dithiolates and bis-bromomethylazobenzenes/bis-bromomethylstilbenes is investigated under high dilution conditions. We show that macrocycles of different size can be formed depending on whether the (Z)- or (E)-isomers of azobenzene (AB) or stilbene are used. This represents the first example of a light-controllable cyclization reaction. The oxidation potential of the small, structurally rigid TTF-AB macrocycle is found to depend on the conformation of the AB moiety, opening the way for the modulation of redox properties by an optical stimulus. DFT calculations show that the out-of-plane distortion of the TTF moiety in this macrocycle is responsible for the variation of its oxidation potential upon photoisomerization of the neighboring AB bridge.

From an icosahedron to a plane: flattening dodecaiodo-dodecaborate by successive stripping of iodine.

It has been shown by electrospray ionization-ion-trap mass spectrometry that B(12)I(12)(2-) converts to an intact B(12) cluster as a result of successive stripping of single iodine radicals or ions. Herein, the structure and stability of all intermediate B(12)I(n)(-) species (n=11 to 1) determined by means of first-principles calculations are reported. The initial predominant loss of an iodine radical occurs most probably via the triplet state of B(12)I(12)(2-), and the reaction path for loss of an iodide ion from the singlet state crosses that from the triplet state. Experimentally, the boron clusters resulting from B(12)I(12)(2-) through loss of either iodide or iodine occur at the same excitation energy in the ion trap. It is shown that the icosahedral B(12) unit commonly observed in dodecaborate compounds is destabilized while losing iodine. The boron framework opens to nonicosahedral structures with five to seven iodine atoms left. The temperature of the ions has a considerable influence on the relative stability near the opening of the clusters. The most stable structures with five to seven iodine atoms are neither planar nor icosahedral.

Collision-induced gas-phase reactions of perhalogenated closo-dodecaborate clusters--a comparative study.

The gas phase reactivity of perhalogenated closo-dodecaborate clusters [B(12)X(12)](2-) (X = F, Cl, Br, I) with N-tetraalkylated ammonium counter ions was investigated by electrospray ionization ion trap mass spectrometry (ESI-IT-MS). Collisions with the background gases introduced a broad variety of gas phase reactions. This study represents the first experimental approach to a new class of boron-rich boron clusters that are not accessible in the condensed phase. The anionic ion pair [B(12)X(12) + N(C(n)H(2n+1))(4)](-) is generally found as the ion of highest mass. Its reaction sequence starts with an alkyl transfer from the ammonium ion to the dodecaborate cluster. Subsequently, the alkylated intermediate [B(12)X(12) + C(n)H(2n+1)](-) decomposes to give very reactive ions of the general formula [B(12)X(11)](-). These ions possess a free boron vertex and immediately bind to the residual gases N(2) and H(2)O in the ion trap by formation of the corresponding adducts [B(12)X(11) + N(2)](-) and [B(12)X(11) + H(2)O](-). Subsequent fragmentations of the water adduct repetitively substitute halogen atoms by hydroxyl groups. The fragmentation process of the free anion [B(12)X(12)](2-) depends on the applied excitation energy and on the halogen substituent X. A radical dehalogenation of the B(12) unit is observed for X = I, whereas for X = Cl or F the loss of small molecules (mainly BX(3)) dominates. The different reaction behavior is explained by the different electron affinity of the halogens and the strength of the boron-halogen-bonds. Surprisingly, isolation of the fragment ion [B(12)I(9)](-) in the ion trap yields the highly stable [B(24)I(18)](2-) dianion. This observation suggests a reaction between two negative ions in the gas phase.

The oxygen-independent coproporphyrinogen III oxidase HemN utilizes harderoporphyrinogen as a reaction intermediate during conversion of coproporphyrinogen III to protoporphyrinogen IX.

During heme biosynthesis the oxygen-independent coproporphyrinogen III oxidase HemN catalyzes the oxidative decarboxylation of the two propionate side chains on rings A and B of coproporphyrinogen III to the corresponding vinyl groups to yield protoporphyrinogen IX. Here, the sequence of the two decarboxylation steps during HemN catalysis was investigated. A reaction intermediate of HemN activity was isolated by HPLC analysis and identified as monovinyltripropionic acid porphyrin by mass spectrometry. This monovinylic reaction intermediate exhibited identical chromatographic behavior during HPLC analysis as harderoporphyrin (3-vinyl-8,13,17-tripropionic acid-2,7,12,18-tetramethylporphyrin). Furthermore, HemN was able to utilize chemically synthesized harderoporphyrinogen as substrate and converted it to protoporphyrinogen IX. These results suggest that during HemN catalysis the propionate side chain of ring A of coproporphyrinogen III is decarboxylated prior to that of ring B.

Loss of atomic nitrogen from even-electron ions? A study on benzodiazepines.

The fragment spectra of protonated nitro-substituted benzodiazepines show an unusual fragment [M + H - 14]+ , which is shown by accurate mass measurement to be due to the loss of a nitrogen atom. Our investigations show that this apparent loss of atomic nitrogen is rather an attachment of molecular oxygen to the [M + H - NO2 ]+• ion, which is the main fragment ion in these spectra. The oxygen attachment is exothermic, and rate constants have been derived. MSn spectra show that it is not easily reversible upon fragmentation of the adduct ion and that it is also observed with some secondary and tertiary fragments, which allows to limit the attachment site to the aromatic ring annulated to the diazepine moiety. Fragments of the oxygen adduct ion indicate that the O2 molecule dissociates in the adduct formation process, and the two oxygen atoms are bound to different sites of the ion. Comparison with radical cations generated by fragmentation of non-nitro-substituted benzodiazepines, none of which showed an oxygen attachment, and the fragmentation mechanisms involved in their formation indicates that the [M + H - NO2 ]+• ion is a distonic ion with the charge and radical site neighbored on the aromatic ring. From these results, we derive a proposal for the formation and structure of the [M + H - NO2 + O2 ]+• ion, which explains the experimental observations. Copyright © 2015 John Wiley & Sons, Ltd.

Effect of different solution flow rates on analyte ion signals in nano-ESI MS, or: when does ESI turn into nano-ESI?

In nano-ESI MS, the qualitative and quantitative characteristics of mass spectra vary considerably upon the use of different spraying conditions, i.e., aperture of the spraying needle and the voltage applied. The major parameters affected by the aperture size is the liquid flow rate which determines the initial droplet size and the current emitted upon the spray process, as described by different models of the ESI process. In the present study, the effect of flow rate on ion signals was studied systematically using mixtures of compounds with different physicochemical properties (i.e., detergent/oligosaccharide and oligosaccharide/peptide). For these model systems, the functional dependence of certain analyte-ion ratios upon the flow rate can be correlated to changes in analyte partition during droplet fission prior to ion release. Analyte suppression is practically absent at minimal flow rates below 20 nL/min.

The Pseudomonas aeruginosa nirE gene encodes the S-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase required for heme d(1) biosynthesis.

Biosynthesis of heme d(1), the essential prosthetic group of the dissimilatory nitrite reductase cytochrome cd(1), requires the methylation of the tetrapyrrole precursor uroporphyrinogen III at positions C-2 and C-7. We produced Pseudomonas aeruginosa NirE, a putative S-adenosyl-L-methionine (SAM)-dependent uroporphyrinogen III methyltransferase, as a recombinant protein in Escherichia coli and purified it to apparent homogeneity by metal chelate and gel filtration chromatography. Analytical gel filtration of purified NirE indicated that the recombinant protein is a homodimer. NirE was shown to be a SAM-dependent uroporphyrinogen III methyltransferase that catalyzes the conversion of uroporphyrinogen III into precorrin-2 in vivo and in vitro. A specific activity of 316.8 nmol of precorrin-2 h(-1) x mg(-1) of NirE was found for the conversion of uroporphyrinogen III to precorrin-2. At high enzyme concentrations NirE catalyzed an overmethylation of uroporphyrinogen III, resulting in the formation of trimethylpyrrocorphin. Substrate inhibition was observed at uroporphyrinogen III concentrations above 17 microM. The protein did bind SAM, although not with the same avidity as reported for other SAM-dependent uroporphyrinogen III methyltransferases involved in siroheme and cobalamin biosynthesis. A P. aeruginosa nirE transposon mutant was not complemented by native cobA encoding the SAM-dependent uroporphyrinogen III methyltransferase involved in cobalamin formation. However, bacterial growth of the nirE mutant was observed when cobA was constitutively expressed by a complementing plasmid, underscoring the special requirement of NirE for heme d(1) biosynthesis.

S-Nitroso compounds interfere with zinc probing by Zinquin.

The intracellular homeostasis of zinc is postulated to be controlled by signaling through nitric oxide (NO). Administration of the NO donor S-nitrosocysteine (SNOC) caused a rapid drop in the fluorescence of the zinc-specific fluorescence of the zinc probe zinquin in C6 glioma cells. Tentatively, a strong effect of NO on the level of mobile intracellular zinc ions was concluded. However, zinc analysis with atomic absorption spectrometry demonstrated that the total cellular zinc level was not changed under these conditions. Sodium nitrite or an NO donor devoid of sulfhydryl groups (diethylamine NONOate) exerted no degrading effect on the Zn/zinquin fluorescence, but cysteine alone evoked a similar decline as SNOC. Hence, the sulfhydryl groups of cysteine seem to compete for zinc from the Zn/zinquin complex. Analysis of the reaction products by mass spectrometry demonstrated that cysteine caused a depletion of zinc from the Zn/zinquin complex, whereas an NO donor without sulfhydryl groups (diethylamine NONOate) did not. It is concluded that great caution should be employed when using S-nitroso compounds together with zinquin in investigations of intracellular zinc homeostasis.