Detalhe da pesquisa
1.
Expanding the available RNA labeling toolbox with CutA nucleotidyltransferase for efficient transcript labeling with purine and pyrimidine nucleotide analogs.
Chembiochem
; : e202400202, 2024 May 31.
Artigo
Inglês
| MEDLINE | ID: mdl-38818670
2.
Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins.
Brief Bioinform
; 23(1)2022 01 17.
Artigo
Inglês
| MEDLINE | ID: mdl-34571541
3.
pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models.
Bioinformatics
; 39(10)2023 10 03.
Artigo
Inglês
| MEDLINE | ID: mdl-37725369
4.
localpdb-a Python package to manage protein structures and their annotations.
Bioinformatics
; 38(9): 2633-2635, 2022 04 28.
Artigo
Inglês
| MEDLINE | ID: mdl-35199148
5.
A library of coiled-coil domains: from regular bundles to peculiar twists.
Bioinformatics
; 36(22-23): 5368-5376, 2021 Apr 01.
Artigo
Inglês
| MEDLINE | ID: mdl-33325494
6.
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor.
PLoS Comput Biol
; 17(10): e1009502, 2021 10.
Artigo
Inglês
| MEDLINE | ID: mdl-34648493
7.
Interplay between DsbA1, DsbA2 and C8J_1298 Periplasmic Oxidoreductases of Campylobacter jejuni and Their Impact on Bacterial Physiology and Pathogenesis.
Int J Mol Sci
; 22(24)2021 Dec 15.
Artigo
Inglês
| MEDLINE | ID: mdl-34948248
8.
Self-analysis of repeat proteins reveals evolutionarily conserved patterns.
BMC Bioinformatics
; 21(1): 179, 2020 May 07.
Artigo
Inglês
| MEDLINE | ID: mdl-32381046
9.
DeepCoil-a fast and accurate prediction of coiled-coil domains in protein sequences.
Bioinformatics
; 35(16): 2790-2795, 2019 08 15.
Artigo
Inglês
| MEDLINE | ID: mdl-30601942
10.
RNArchitecture: a database and a classification system of RNA families, with a focus on structural information.
Nucleic Acids Res
; 46(D1): D202-D205, 2018 01 04.
Artigo
Inglês
| MEDLINE | ID: mdl-29069520
11.
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.
RNA
; 23(5): 655-672, 2017 05.
Artigo
Inglês
| MEDLINE | ID: mdl-28138060
12.
Combining Rosetta with molecular dynamics (MD): A benchmark of the MD-based ensemble protein design.
J Struct Biol
; 203(1): 54-61, 2018 07.
Artigo
Inglês
| MEDLINE | ID: mdl-29454111
13.
Variability of the core geometry in parallel coiled-coil bundles.
J Struct Biol
; 204(1): 117-124, 2018 10.
Artigo
Inglês
| MEDLINE | ID: mdl-30042011
14.
The Structure and Topology of α-Helical Coiled Coils.
Subcell Biochem
; 82: 95-129, 2017.
Artigo
Inglês
| MEDLINE | ID: mdl-28101860
15.
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.
RNA
; 21(6): 1066-84, 2015 Jun.
Artigo
Inglês
| MEDLINE | ID: mdl-25883046
16.
tRNAmodpred: A computational method for predicting posttranscriptional modifications in tRNAs.
Methods
; 107: 34-41, 2016 09 01.
Artigo
Inglês
| MEDLINE | ID: mdl-27016142
17.
The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification.
Nucleic Acids Res
; 42(7): 4160-79, 2014 Apr.
Artigo
Inglês
| MEDLINE | ID: mdl-24464998
18.
Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes.
BMC Bioinformatics
; 16: 336, 2015 Oct 23.
Artigo
Inglês
| MEDLINE | ID: mdl-26493560
19.
S6:S18 ribosomal protein complex interacts with a structural motif present in its own mRNA.
RNA
; 19(10): 1341-8, 2013 Oct.
Artigo
Inglês
| MEDLINE | ID: mdl-23980204
20.
Computational modeling of protein-RNA complex structures.
Methods
; 65(3): 310-9, 2014 Feb.
Artigo
Inglês
| MEDLINE | ID: mdl-24083976