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1.
Mol Biol (Mosk) ; 54(3): 497-511, 2020.
Artigo em Russo | MEDLINE | ID: mdl-32492014

RESUMO

Uterine leiomyoma (UL) is the most common benign tumor in women of reproductive age. Gene therapy using suicidal genes appears to be a promising approach for UL treatment. One of key factors for success of gene therapy is the right choice of genetic construct carrier. A promising group of non-viral carriers for cell delivery of expression vectors is cationic Cys-flanked peptides which form tight complexes with DNA due to electrostatic interactions and the presence of interpeptide disulfide bonds. The paper reports a comparative study of the physico-chemical, toxic, and transfectional properties of the DNA-peptide complexes obtained by matrix polymerization or oxidative polycondensation of Cys-flanked peptides using the chain growth terminator 2-amino ethanethiol. We have demonstrated the therapeutic effect of the delivery of the pPTK-1 plasmid carrying the herpes simplex virus type 1 (HSV-1) thymidine kinase gene into PANC-1, and HEK-293T cell culture as well as into primary UL cells. It has been shown that the carriers obtained by oxidative polycondensation transform primary UL cells more efficiently than those produced by matrix polymerization. Treatment with ganciclovir resulted in the death of up to 40% of UL cells transfected with the pPTK-1 plasmid. The perspectives of use of the polyR6 carrier produced by oxidative polycondensation as a tool for the development of modular peptide carriers for the purposes of UL gene therapy were discussed.


Assuntos
Genes Transgênicos Suicidas , Terapia Genética , Vetores Genéticos , Leiomioma , Timidina Quinase , Feminino , Células HEK293 , Humanos , Leiomioma/terapia , Peptídeos , Simplexvirus/enzimologia , Timidina Quinase/genética
2.
Nature ; 437(7061): 1053-6, 2005 Oct 13.
Artigo em Inglês | MEDLINE | ID: mdl-16222301

RESUMO

The most controversial area in protein folding concerns its earliest stages. Questions such as whether there are genuine folding intermediates, and whether the events at the earliest stages are just rearrangements of the denatured state or progress from populated transition states, remain unresolved. The problem is that there is a lack of experimental high-resolution structural information about early folding intermediates and denatured states under conditions that favour folding because competent states spontaneously fold rapidly. Here we have solved directly the solution structure of a true denatured state by nuclear magnetic resonance under conditions that would normally favour folding, and directly studied its equilibrium and kinetic behaviour. We engineered a mutant of Drosophila melanogaster Engrailed homeodomain that folds and unfolds reversibly just by changing ionic strength. At high ionic strength, the mutant L16A is an ultra-fast folding native protein, just like the wild-type protein; however, at physiological ionic strength it is denatured. The denatured state is a well-ordered folding intermediate, poised to fold by docking helices and breaking some non-native interactions. It unfolds relatively progressively with increasingly denaturing conditions, and so superficially resembles a denatured state with properties that vary with conditions. Such ill-defined unfolding is a common feature of early folding intermediate states and accounts for why there are so many controversies about intermediates versus compact denatured states in protein folding.


Assuntos
Proteínas de Homeodomínio/química , Proteínas de Homeodomínio/metabolismo , Mutação/genética , Ressonância Magnética Nuclear Biomolecular , Dobramento de Proteína , Fatores de Transcrição/química , Fatores de Transcrição/metabolismo , Animais , Proteínas de Drosophila , Proteínas de Homeodomínio/genética , Cinética , Concentração Osmolar , Conformação Proteica/efeitos dos fármacos , Desnaturação Proteica/efeitos dos fármacos , Cloreto de Sódio/farmacologia , Soluções/química , Temperatura , Termodinâmica , Fatores de Transcrição/genética
3.
J Natl Cancer Inst ; 77(2): 449-52, 1986 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-3461205

RESUMO

The effect of long-term exposure to phenobarbital (CAS: 50-06-6) subsequent to tumor initiation on the development of liver tumors in BALB/c and (C57BL/6 X C3H/Anf)F1 (B6C3F1) mice was determined. In male B6C3F1 mice that received either 15 or 45 ppm diethylnitrosamine [(DENA) CAS: 55-18-5] between 6 and 10 weeks of age, subsequent treatment with 500 ppm sodium phenobarbital in the drinking water resulted in the promotion of liver tumors. However, in male B6C3F1 mice initiated on day 15 of age with 25 mg DENA/kg, beginning long-term treatment of 500 ppm sodium phenobarbital at 4 weeks of age inhibited the development of liver tumors, whereas in male BALB/c mice initiated with 25 mg DENA/kg on day 15 of age, beginning the long-term treatment with 500 ppm sodium phenobarbital at 4 weeks of age promoted the development of liver tumors. Hence phenobarbital can either enhance or inhibit the formation of liver tumors, depending both on the mouse strain used and the animal's age at the start of exposure.


Assuntos
Neoplasias Hepáticas Experimentais/induzido quimicamente , Fenobarbital/farmacologia , Adenoma/induzido quimicamente , Fatores Etários , Animais , Carcinoma/induzido quimicamente , DNA/biossíntese , Dietilnitrosamina , Masculino , Camundongos , Camundongos Endogâmicos BALB C , Camundongos Endogâmicos , Especificidade da Espécie
4.
J Natl Cancer Inst ; 72(3): 741-4, 1984 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-6142138

RESUMO

The effect of concurrent administration of phenobarbital on the hepatocarcinogenicity of N-nitrosodiethylamine (diethylnitrosamine; DENA) in rats was investigated by determination of the incidence of gamma-glutamyltransferase (gamma-glutamyltranspeptidase) (GGT)-positive foci and liver tumors. Male outbred Sprague-Dawley rats received either a weekly oral dose of DENA (0.08 mol/kg), phenobarbital sodium (500 ppm) in their drinking water, or DENA and phenobarbital sodium concurrently. After 16 weeks, only the animals treated concurrently with DENA and phenobarbital sodium had GGT-positive foci (3.65 foci/cm2). At 30 weeks, the group treated with DENA and phenobarbital sodium exhibited more foci (23.6 foci/cm2) compared to the group that received only DENA (3.08 foci/cm2). The average size of foci in both of the DENA-treated groups was the same. The tumors in the group that received DENA plus phenobarbital sodium showed a greater incidence of GGT activity compared to the tumors in the DENA group. Under the conditions of this study the incidence of GGT-positive foci did not predict the incidence of hepatocellular carcinomas.


Assuntos
Dietilnitrosamina/toxicidade , Neoplasias Hepáticas Experimentais/patologia , Fígado/enzimologia , Nitrosaminas/toxicidade , Fenobarbital/toxicidade , Lesões Pré-Cancerosas/patologia , gama-Glutamiltransferase/metabolismo , Animais , Interações Medicamentosas , Fígado/efeitos dos fármacos , Neoplasias Hepáticas Experimentais/induzido quimicamente , Neoplasias Hepáticas Experimentais/enzimologia , Masculino , Lesões Pré-Cancerosas/induzido quimicamente , Lesões Pré-Cancerosas/enzimologia , Ratos , Ratos Endogâmicos
5.
J Mol Biol ; 286(2): 579-92, 1999 Feb 19.
Artigo em Inglês | MEDLINE | ID: mdl-9973572

RESUMO

The energy landscape for the denatured state of a protein provides a key to understanding early folding events. We have attempted to map this landscape for the third fibronectin type III domain from human tenascin (TNfn3), a compact 9.5 kDa beta-sandwich protein, through measurement of 15N backbone dynamics on the milli- to picosecond timescale and a number of structural parameters. TNfn3 was fully denatured with 5 M urea and buffered at pH 4.9 with 50 mM acetate. Under these conditions, multinuclear NMR experiments were used to complete a full spectral assignment. Secondary chemical shifts, 3JHNHalpha coupling constants, amide proton temperature coefficients, interresidue nuclear Overhauser enhancement (NOE) intensities, R1 and R2 15N relaxation rates, and {1H-15N} steady-state NOE enhancements were analyzed at 11.74 T (500 MHz) and 303 K. Several parameters were also measured at 278 K. Off-resonance T1rho experiments at 14.1 T (600 MHz) and 278 K reveal a lack of motion on the milli- to microsecond timescale, indicating that no element of residual structure in the denatured domain is persistant. Although increased sample viscosity dampens overall mobility at the lower temperature, the dynamic propensities of individual residues are temperature independent. Reduced mobility correlates to regions of extreme hydrophobicity or polarity. In these same regions, several other measures for random coil behavior are perturbed. Evidence for two nascent turn-like structures is reported. Otherwise, residual structure correlates more strongly to characteristics of individual residues than to structural elements of the native state.


Assuntos
Fibronectinas/química , Espectroscopia de Ressonância Magnética , Estrutura Secundária de Proteína , Sequência de Aminoácidos , Fibronectinas/efeitos dos fármacos , Cinética , Modelos Moleculares , Dados de Sequência Molecular , Método de Monte Carlo , Movimento (Física) , Desnaturação Proteica , Dobramento de Proteína , Estrutura Terciária de Proteína , Ureia/farmacologia
6.
J Mol Biol ; 268(2): 494-511, 1997 May 02.
Artigo em Inglês | MEDLINE | ID: mdl-9159486

RESUMO

Barstar an 89-residue protein consisting of four helices and a three-stranded parallel beta-sheet, is the intracellular inhibitor of the endoribonuclease barnase. Barstar C40/82A, a mutant in which the two cysteine residues have been replaced by alanine, has been used as a pseudo wild-type in folding studies and in the crystal structure of the barnase:barstar C40/82A complex. We have determined a high resolution solution structure of barstar C40/82A. The structures of barstar C40/82A and the wild-type are superimposable. A comparison with the crystal structure of the barnase:barstar C40/82A complex revealed subtle differences in the regions involved in the binding of barstar to barnase. Side-chain rotations of residues Asn33, Asp35 and Asp39 and a movement of the binding loop (Pro27-Glu32) towards the binding site of barnase facilitate the formation of interface hydrogen bonds and aromatic contacts in the complex. Extreme line broadening and missing signals in 1H-15N correlation spectra indicate substantial conformational exchange for a large subset of residues. 15N relaxation data at two magnetic field strengths, 11.74 T and 14.10 T, were used to estimate exchange contributions and to map the spectral density function at five frequencies: 0, 50, 60, 450 and 540 MHz. Based on these results, model-free calculations with the inclusion of estimated exchange contributions were used to derive order parameters and internal correlation times. The validity of this approach has been investigated with model-free calculations that incorporate longitudinal relaxation rates and heteronuclear 1H-15N NOE data only at 11.74 T and 14.10 T. The relaxation data suggest substantial conformational exchange in regions of barstar C40/82A, including the binding loop, the second and the third helices, and the second and the third strands. Amide proton exchange experiments suggest a stable hydrogen bond network for all helices and sheets except the third helix and the C-terminal of the second and the third strands. The combined results indicate a rigid body movement of the second helix and twisting motions of the beta-sheet of barstar, which might be important for the interaction with barnase.


Assuntos
Proteínas de Bactérias/química , Inibidores Enzimáticos/química , Proteínas de Bactérias/ultraestrutura , Ligação de Hidrogênio , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Movimento (Física) , Mutação Puntual , Ligação Proteica , Conformação Proteica , Dobramento de Proteína , Proteínas Recombinantes , Ribonucleases/química
7.
J Mol Biol ; 259(4): 805-18, 1996 Jun 21.
Artigo em Inglês | MEDLINE | ID: mdl-8683584

RESUMO

Detection of residual structure in denatured proteins is of interest because fleetingly structured regions may be initiation points of the folding pathway. Residual structure in this context is not the definition of one stable conformation but a population phenomenon. Acid, thermal and solvent-denatured states have recently been examined by NMR spectroscopy, but cold-denatured states have not been characterised to date. Cold denaturation is a general phenomenon of globular proteins, which provides a convenient route for studying early events in protein folding: such states can be induced to fold and be monitored on a submillisecond time scale by temperature-jump methods. Here, we use NMR spectroscopy to define residual structure in cold-denatured barstar. The cold-denatured state becomes significantly populated in the presence of increasing concentrations of urea and lower temperature. In the presence of 3 M urea, the double mutant of barstar in which Cys40 and Cys82 are both mutated to Ala (C40/82A) is completely and reversibly denatured at 278 K, a temperature that is accessible to NMR experiments. This cold-denatured state of barstar was assigned by heteronuclear NMR experiments and structural parameters such as NOE, coupling constants and chemical shifts were derived. Based on the excellent dispersion in a HSQC-NOESY-HSQC experiment, dNN(i,i+1) NOEs were observed for almost all residues. This allowed us to normalise NOE intensities as the NOE: diagonal ratio dNN(i,i+1) NOE (sigma NN) and the NOE ratio of d(alpha N(i+1,i+1)):d(alpha N(i,i+1)) (sigma N alpha/sigma alpha N). This approach reveals residual structure populating the alpha-region of the (phi, psi) conformational space in the regions corresponding to the first and the second helices and near the end of the second beta-strand of native barstar, whereas the C-terminal region that corresponds to the fourth helix and the third beta-strand is in a random coil conformation. The results suggest that the first and the second helices are potential initiation sites for the folding of barstar. The details presented here provide the starting point for the study of rapid folding of cold-denatured barstar.


Assuntos
Proteínas de Bactérias/química , Inibidores Enzimáticos/química , Conformação Proteica , Desnaturação Proteica , Dobramento de Proteína , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Temperatura Baixa , Inibidores Enzimáticos/metabolismo , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Mutação , Ribonucleases/antagonistas & inibidores , Software , Ureia/farmacologia
8.
J Mol Biol ; 278(2): 417-29, 1998 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-9571061

RESUMO

The structural and dynamic properties of an immunoglobulin superfamily domain (IgSF), Ig 18', have been characterised by NMR at 285 K, in the presence of 4.2 M and 6.0 M urea, respectively. Analysis of chemical shift deviations, 3JHNHalpha coupling constants, sequential NOE pattern, and 15N relaxation data reveals that although the two urea-denatured states are highly disordered, some local turn-like residual structures do exist. Moreover, some distinct differences between the properties of the two denatured states are observed. In 4.2 M urea-denatured Ig 18', regions 80-83 and 86-92 adopt turn-like conformations, furthermore, region 84-93 is involved in slow exchange processes that occur on a micro- to millisecond time-scale. In the 6.0 M urea-denatured state, these turn-like conformations are less occupied, and chemical exchange processes in region 84-93 are largely reduced. In contrast, region 32-36 has persistent turn-like structures in both urea-denatured states. Some correlation between the spectral density function at 0 frequency, Jeff(0), for the urea-denatured states and the secondary structure elements of the folded state have been observed. Except for the terminal regions, residues corresponding to beta-strands have higher Jeff(0) values compared to residues corresponding to loops. The characterisation and comparison of the two urea-denatured states highlight residues that possess properties that may be crucial for the initiation of folding of this domain.


Assuntos
Imunoglobulinas/química , Ressonância Magnética Nuclear Biomolecular/instrumentação , Ureia , Imunoglobulinas/metabolismo , Modelos Moleculares , Desnaturação Proteica
9.
J Mol Biol ; 254(2): 305-21, 1995 Nov 24.
Artigo em Inglês | MEDLINE | ID: mdl-7490750

RESUMO

The denatured states of barnase that are induced by urea, acid, and high temperature and acid have been assigned and characterised by high resolution heteronuclear NMR. The assignment was completed using a combination of triple-resonance and magnetisation-transfer methods. The latter was facilitated by selecting a suitable mutant of barnase (Ile-->Val51) which has an appropriate rate of interconversion between native and denatured states in urea. 3J NH-C alpha H coupling constants were determined for pH and urea-denatured barnase and intrinsic "random coil" coupling constants are shown to be different for different residue types. All the denatured states are highly unfolded. But, a consistent series of weak correlations in chemical shift, NOESY and coupling constant data provides evidence that the acid-denatured state has some residual structure in regions that form the first and second helices and the central strands of beta-sheet in the native protein. The acid/temperature-denatured states has less structure in these regions, and the urea-denatured state, less still. These observations may be combined with detailed analyses of the folding pathway of barnase from kinetic studies to illuminate the relevance of residual structure in the denatured states of proteins to the mechanism of protein folding. First, the folding of barnase is known to proceed in its later stages through structures in which the first helix and centre of the beta-sheet are extensively formed. Thus, embryonic initiation sites for these do exist in the denatured states and so could well develop into true nuclei. Second, it has been clearly established that the second helix is unfolded in these later states, and so residual structure in this region of the protein is non-productive. These data fit a model of protein folding in which local nucleation sites are latent in the denatured state and develop only when they make interactions elsewhere in the protein that stabilise them during the folding process. Thus, studies of the structure of denatured states pinpoint where nucleation sites may be, and the kinetic and protein engineering studies show which ones are productive.


Assuntos
Desnaturação Proteica , Dobramento de Proteína , Ribonucleases/química , Amidas/metabolismo , Proteínas de Bactérias , Concentração de Íons de Hidrogênio , Cinética , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Mutação Puntual , Estrutura Secundária de Proteína , Ribonucleases/genética , Temperatura , Ureia/farmacologia
10.
J Mol Biol ; 282(1): 181-94, 1998 Sep 11.
Artigo em Inglês | MEDLINE | ID: mdl-9733649

RESUMO

The third fibronectin type III domain from human tenascin adopts a compact beta-sandwich fold. Its boundaries were originally selected to encode a 90-residue domain (TNfn31-90). We conclude that the dynamic properties of TNfn3 are more accurately represented when the C terminus is extended by the two naturally succeeding residues. Longitudinal (R1) and transverse (R2) 15N relaxation rates, and ¿1H-15N¿ NOE enhancements at pH 4.9 and 300 K are presented for TNfn31-90 and TNfn31-92, the extended form, at two field strengths (11.74 and 14.10 T). Nearly identical results confirm their similar motional properties over a broad range of timescales. However, a number of residues near the C terminus in TNfn31-90 exhibit elevated transverse relaxation rates and broadened signals in 1H-15N HSQC spectra. Explicit rates of chemical exchange for five residues in TNfn31-90 were determined by measuring transverse relaxation rates in a series of CPMG experiments with spin-echo refocusing delays increasing from 311 to 1436 micros. Calculated exchange rates average 1000(+/-311) s-1, with individual uncertainties near 20%. Homonuclear TOCSY experiments collected between pH 4 and 7 reveal the coincident titration of two acidic clusters in TNfn31-90 at pH 5. 64(+/-0.47). The repulsive electrostatic interaction of the C-terminal carboxylate with one of these clusters may promote chemical exchange in the shorter domain. Additionally, NOE and chemical shift data suggest hydrogen bond formation between the added residues and adjacent loops. The data affirm the importance of judiciously selecting domain boundaries prior to the characterization of molecular properties.


Assuntos
Fibronectinas/química , Fragmentos de Peptídeos/química , Tenascina/química , Humanos , Modelos Moleculares , Movimento (Física) , Isótopos de Nitrogênio , Ressonância Magnética Nuclear Biomolecular , Titulometria
11.
J Mol Biol ; 292(1): 181-90, 1999 Sep 10.
Artigo em Inglês | MEDLINE | ID: mdl-10493867

RESUMO

A detailed structural analysis of interactions between denatured proteins and GroEL is essential for an understanding of its mechanism. Minichaperones constitute an excellent paradigm for obtaining high-resolution structural information about the binding site and conformation of substrates bound to GroEL, and are particularly suitable for NMR studies. Here, we used transferred nuclear Overhauser effects to study the interaction in solution between minichaperone GroEL(193-335) and a synthetic peptide (Rho), corresponding to the N-terminal alpha-helix (residues 11 to 23) of the mitochondrial rhodanese, a protein whose in vitro refolding is mediated by minichaperones. Using a 60 kDa maltose-binding protein (MBP)-GroEL(193-335) fusion protein to increase the sensitivity of the transferred NOEs, we observed characteristic sequential and mid-range transferred nuclear Overhauser effects. The peptide adopts an alpha-helical conformation upon binding to the minichaperone. Thus the binding site of GroEL is compatible with binding of alpha-helices as well as extended beta-strands. To locate the peptide-binding site on GroEL(193-335), we analysed changes in its chemical shifts on adding an excess of Rho peptide. All residues with significant chemical shift differences are localised in helices H8 and H9. Non-specific interactions were not observed. This indicates that the peptide Rho binds specifically to minichaperone GroEL(193-335). The binding region identified by NMR in solution agrees with crystallographic studies with small peptides and with fluorescence quenching studies with denatured proteins.


Assuntos
Transportadores de Cassetes de Ligação de ATP , Chaperonina 60/química , Proteínas de Escherichia coli , Chaperonas Moleculares/química , Proteínas de Transporte de Monossacarídeos , Fragmentos de Peptídeos/química , Tiossulfato Sulfurtransferase/química , Sequência de Aminoácidos , Animais , Sítios de Ligação , Proteínas de Transporte/química , Bovinos , Escherichia coli , Espectroscopia de Ressonância Magnética , Proteínas Ligantes de Maltose , Modelos Moleculares , Dados de Sequência Molecular , Ligação Proteica , Desnaturação Proteica , Estrutura Secundária de Proteína , Proteínas Recombinantes de Fusão/química
12.
J Mol Biol ; 296(5): 1257-82, 2000 Mar 10.
Artigo em Inglês | MEDLINE | ID: mdl-10698632

RESUMO

The detailed characterization of denatured proteins remains elusive due to their mobility and conformational heterogeneity. NMR studies are beginning to provide clues regarding residual structure in the denatured state but the resulting data are too sparse to be transformed into molecular models using conventional techniques. Molecular dynamics simulations can complement NMR by providing detailed structural information for components of the denatured ensemble. Here, we describe three independent 4 ns high-temperature molecular dynamics simulations of barnase in water. The simulated denatured state was conformationally heterogeneous with respect to the conformations populated both within a single simulation and between simulations. Nonetheless, there were some persistent interactions that occurred to varying degrees in all simulations and primarily involved the formation of fluid hydrophobic clusters with participating residues changing over time. The region of the beta(3-4) hairpin contained a particularly high degree of such side-chain interactions but it lacked beta-structure in two of the three denatured ensembles: beta(3-4) was the only portion of the beta-structure to contain significant residual structure in the denatured state. The two principal alpha-helices (alpha1 and alpha2) adopted dynamic helical structure. In addition, there were persistent contacts that pinched off core 2 from the body of the protein. The rest of the protein was unstructured, aside from transient and mostly local side-chain interactions. Overall, the simulated denatured state contains residual structure in the form of dynamic, fluctuating secondary structure in alpha1 and alpha2, as well as fluctuating tertiary contacts in the beta(3-4) region, and between alpha1 and beta(3-4), in agreement with previous NMR studies. Here, we also show that these regions containing residual structure display impaired mobility by both molecular dynamics and NMR relaxation experiments. The residual structure was important in decreasing the conformational states available to the chain and in repairing disrupted regions. For example, tertiary contacts between beta(3-4) and alpha1 assisted in the refolding of alpha1. This contact-assisted helix formation was confirmed in fragment simulations of beta(3-4) and alpha1 alone and complexed, and, as such, alpha1 and beta(3-4) appear to be folding initiation sites. The role of these sites in folding was investigated by working backwards and considering the simulation in reverse, noting that earlier time-points from the simulations provide models of the major intermediate and transition states in quantitative agreement with data from both unfolding and refolding experiments. Both beta(3-4) and alpha1 are dynamic in the denatured state but when they collide and make enough contacts, they provide a loose structural scaffold onto which further beta-strands pack. The beta-structure condenses about beta(3-4), while alpha1 aids in stabilizing beta(3-4) and maintaining its orientation. The resulting beta-structure is relatively planar and loose in the major intermediate. Further packing ensues, and as a result the beta-sheet twists, leading to the major transition state. The structure is still expanded and loops are not well formed at this point. Fine-tuning of the packing interactions and the final condensation of the structure then occurs to yield the native state.


Assuntos
Bacillus/enzimologia , Simulação por Computador , Dobramento de Proteína , Renaturação Proteica , Ribonucleases/química , Ribonucleases/metabolismo , Sequência de Aminoácidos , Proteínas de Bactérias , Temperatura Alta , Cinética , Modelos Moleculares , Dados de Sequência Molecular , Ressonância Magnética Nuclear Biomolecular , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/metabolismo , Desnaturação Proteica , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Água/metabolismo
13.
J Mol Biol ; 264(3): 624-39, 1996 Dec 06.
Artigo em Inglês | MEDLINE | ID: mdl-8969309

RESUMO

The NMR solution structure of an immunoglobulin superfamily module of twitchin (Ig 18') has been determined and the kinetic and equilibrium folding behaviour characterised. Thirty molecular coordinates were calculated using a hybrid distance geometry-simulated annealing protocol based on 1207 distance and 48 dihedral restraints. The atomic rms distributions about the mean coordinate for the ensemble of structures is 0.55( +/- 0.09) A for backbone atoms and 1.10( +/- 0.08) A for all heavy atoms. The protein has a topology very similar to that of telokin and the titin Ig domains and thus it falls into the I set of the immunoglobulin superfamily. The close agreement between the predicted and observed structures of Ig 18' demonstrates clearly that the I set profile can be applied in the structure prediction of immunoglobulin-like domains of diverse modular proteins. Folding studies reveal that the protein has relatively low thermodynamic stability, deltaG(H2O)U-F = 4.0 kcal mol(-1) at physiological pH. Unfolding studies suggest that the protein has considerable kinetic stability, the half life of the unfolding is greater than 40 minutes in the absence of denaturant.


Assuntos
Proteínas de Caenorhabditis elegans , Caenorhabditis elegans/química , Proteínas de Ligação a Calmodulina/química , Proteínas de Helminto/química , Imunoglobulinas/química , Proteínas Musculares/química , Estrutura Terciária de Proteína , Sequência de Aminoácidos , Animais , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Quinase de Cadeia Leve de Miosina , Fragmentos de Peptídeos , Peptídeos , Desnaturação Proteica , Dobramento de Proteína , Estrutura Secundária de Proteína , Alinhamento de Sequência
14.
J Mol Biol ; 320(3): 431-42, 2002 Jul 12.
Artigo em Inglês | MEDLINE | ID: mdl-12096901

RESUMO

The breast cancer susceptibility gene product BRCA1 is a tumour suppressor but the biochemical and biological functions that underlie its role in carcinogenesis remain to be determined. Here, we characterise the solution properties of the highly conserved C terminus of BRCA1, consisting of a tandem repeat of the BRCT domain (BRCT-tan), that plays a critical role in BRCA1-mediated tumour suppression. The overall free energy of unfolding of BRCT-tan is high (14.2 kcal mol(-1) at 20 degrees C in water) but unfolding occurs via an aggregation-prone, partly folded intermediate. A representative set of cancer-associated sequence variants was constructed and the effects on protein stability were measured. All of the mutations were highly destabilising and they would be expected to cause loss of function for this reason. Over half could not be purified in a soluble form, indicating that these residues are critical for maintaining structural integrity. The remaining mutants exhibited much greater aggregation propensities than the wild-type, which is most likely a consequence of their reduced thermodynamic stability relative to the partly folded intermediate. The mutations characterised here are located at different sites in the BRCT-tan structure that do not explain fully their effects on the protein's stability. Thus, the results indicate an important role for biophysical studies in assessing the significance of sequence variants and in determining how they cause disease.


Assuntos
Proteína BRCA1/química , Proteína BRCA1/genética , Neoplasias da Mama/química , Neoplasias da Mama/genética , Mutação , Dicroísmo Circular , Clonagem Molecular , Estabilidade de Medicamentos , Feminino , Genes BRCA1 , Variação Genética , Humanos , Técnicas In Vitro , Modelos Moleculares , Desnaturação Proteica , Dobramento de Proteína , Estrutura Terciária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Soluções , Espectrometria de Fluorescência , Sequências de Repetição em Tandem , Termodinâmica
15.
J Neurol ; 252(11): 1363-71, 2005 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-15965585

RESUMO

In a sample of 28 subacute anterior circulation ischemic stroke patients with severe arm paresis, reduced motor cortex excitability (increased motor thresholds, reduced MEP amplitudes, reduced number of active points) and a reduced conduction velocity in the corticospinal system were found in the affected hemisphere. At the same time motor cortex topology for the abductor pollicis brevis (APB) representation was comparable for the affected and non-affected hemisphere. Considerable arm motor recovery (Fugl-Meyer test) was observed when assessed four weeks later after a period of rehabilitation intervention. Motor cortex excitability and conduction velocity in the corticospinal system improved in the affected hemisphere. In addition, APB representation showed a medial shift in patients with such a representation at pre test (n=14). Multiple stepwise regression indicated that of all transcranial magnetic stimulation (TMS) parameters only the medial shift of the motor cortex map predicted motor recovery. Assessing the effect of training time (non-intensified vs. intensified therapy) and type of arm training (Bobath approach vs. Arm BASIS training) with a randomised controlled design revealed that the impairment-oriented Arm BASIS training improved motor control more than the control conditions. In addition, patients of the group receiving the Arm BASIS training with an APB representation at pre test showed a medial shift of the motor cortex map and improved conduction times. In conclusion, changes in motor cortex topology were likely to be relevant for motor recovery and might have been induced by the impairment-oriented training.


Assuntos
Mapeamento Encefálico , Córtex Motor/fisiopatologia , Reabilitação do Acidente Vascular Cerebral , Acidente Vascular Cerebral/fisiopatologia , Idoso , Potencial Evocado Motor/fisiologia , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Córtex Motor/patologia , Paresia/etiologia , Recuperação de Função Fisiológica , Acidente Vascular Cerebral/complicações , Estimulação Magnética Transcraniana
16.
Protein Sci ; 8(6): 1286-91, 1999 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-10386878

RESUMO

The refolding of barstar, the intracellular inhibitor of barnase, is dominated by the slow formation of a cis peptidyl prolyl bond in the native protein. The triple mutant C40/82A P27A in which two cysteine residues and one trans proline were replaced by alanine was used as model system to investigate the kinetics and structural consequences of the trans/cis interconversion of Pro48. One- and two-dimensional real-time NMR spectroscopy was used to follow the trans/cis interconversion after folding was initiated by rapid dilution of the urea denatured protein. Series of 1H, 15N HSQC spectra acquired with and without the addition of peptidyl prolyl isomerase unambiguously revealed the accumulation of a transient trans-Pro48 intermediate within the dead time of the experiment. Subtle chemical shift differences between the native state and the intermediate spectra indicate that the intermediate is predominantly native-like with a local rearrangement in the Pro48 loop and in the beta-sheet region including residues Tyr47, Ala82, Thr85, and Val50.


Assuntos
Proteínas de Bactérias/química , Dobramento de Proteína , Cinética , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Conformação Proteica , Desnaturação Proteica , Espectrometria de Fluorescência
17.
FEBS Lett ; 362(3): 333-6, 1995 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-7729524

RESUMO

NMR spectroscopy has been used to determine the secondary structure of one of the double-stranded RNA binding domains from the Drosophila protein staufen. The domain has an alpha beta beta beta alpha arrangement of secondary structure, with the beta strands forming an antiparallel beta sheet. The secondary structure differs from that found in the RNP RNA binding domain.


Assuntos
Proteínas de Drosophila , Estrutura Secundária de Proteína , RNA de Cadeia Dupla/metabolismo , Proteínas de Ligação a RNA/química , Sequência de Aminoácidos , Animais , Sítios de Ligação , Drosophila/química , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Proteínas de Ligação a RNA/metabolismo
18.
FEBS Lett ; 423(1): 110-2, 1998 Feb 13.
Artigo em Inglês | MEDLINE | ID: mdl-9506851

RESUMO

The folding and unfolding of proteins is generally assumed to be so co-operative that the overall process may be followed by a single probe, such as tryptophan fluorescence. Folding kinetics of three mutants of barnase and chymotrypsin inhibitor 2 (CI2) were studied by real-time NMR. Rate constants for changes in individual residues during the unfolding or refolding of the mutants studied by real-time NMR are all within experimental error of the overall process of folding/unfolding measured by stopped-flow measurements of tryptophan fluorescence. Folding of these mutants is thus highly co-operative. Changes in the tryptophan fluorescence give accurate measurements of the protein folding process.


Assuntos
Mutação , Ressonância Magnética Nuclear Biomolecular , Peptídeos/química , Dobramento de Proteína , Ribonucleases/química , Proteínas de Bactérias , Peptídeos/genética , Proteínas de Plantas , Ribonucleases/genética , Fatores de Tempo
19.
Neuropsychologia ; 37(12): 1421-5, 1999 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-10606015

RESUMO

Subjects were exposed to pictures of self and others (e.g., friend, stranger, and famous people) to determine if there was an advantage in reaction time and accuracy in identifying the self. It was found that upright and inverted self-faces were identified more rapidly than non-self faces when subjects responded with their left hand, which in other tasks has corresponded with contralateral hemispheric dominance. These data suggest that self-recognition may be correlated with neural activity in the right hemisphere, and that the differences observed may not be unique to self-face recognition. These results are in agreement with previous research indicating that self-directed awareness is correlated with right prefrontal activity.


Assuntos
Face , Lateralidade Funcional , Percepção Visual/fisiologia , Adulto , Córtex Cerebral/fisiologia , Ego , Feminino , Humanos , Masculino
20.
Neuropsychologia ; 38(7): 1047-53, 2000.
Artigo em Inglês | MEDLINE | ID: mdl-10775715

RESUMO

Evidence has indicated that the right frontal cortex is preferentially involved in self-face recognition. To test this further, we employed a face identification task and examined hand response differences (N=10). Pictures of famous faces were combined with pictures of the participants' faces (self) and their co-workers' faces (familiar). These images were presented as a 'movie' in which one face transformed into another. Under the first instruction set, the movies began with either the participant's face or a co-worker's face, and the sequences gradually morphed into a famous face. When told to stop the movie when the face in the sequence became famous, a significantly later 'frame' was identified when the movies were composed of self-faces and the participants responded with their left hand. When the movies started with the famous faces and participants had to stop the movie when it became their own or their familiar co-worker's image (Instruction set 2), a significantly earlier frame was identified in the 'Self: Left hand' condition. The data suggest that participants are inclined to identify images as their own when the right hemisphere is preferentially accessed.


Assuntos
Cognição/fisiologia , Face , Lateralidade Funcional/fisiologia , Autoimagem , Adulto , Gráficos por Computador , Feminino , Mãos/fisiologia , Humanos , Masculino
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