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1.
Sensors (Basel) ; 24(10)2024 May 08.
Artigo em Inglês | MEDLINE | ID: mdl-38793846

RESUMO

The agricultural sector is amidst an industrial revolution driven by the integration of sensing, communication, and artificial intelligence (AI). Within this context, the internet of things (IoT) takes center stage, particularly in facilitating remote livestock monitoring. Challenges persist, particularly in effective field communication, adequate coverage, and long-range data transmission. This study focuses on employing LoRa communication for livestock monitoring in mountainous pastures in the north-western Alps in Italy. The empirical assessment tackles the complexity of predicting LoRa path loss attributed to diverse land-cover types, highlighting the subtle difficulty of gateway deployment to ensure reliable coverage in real-world scenarios. Moreover, the high expense of densely deploying end devices makes it difficult to fully analyze LoRa link behavior, hindering a complete understanding of networking coverage in mountainous environments. This study aims to elucidate the stability of LoRa link performance in spatial dimensions and ascertain the extent of reliable communication coverage achievable by gateways in mountainous environments. Additionally, an innovative deep learning approach was proposed to accurately estimate path loss across challenging terrains. Remote sensing contributes to land-cover recognition, while Bidirectional Long Short-Term Memory (Bi-LSTM) enhances the path loss model's precision. Through rigorous implementation and comprehensive evaluation using collected experimental data, this deep learning approach significantly curtails estimation errors, outperforming established models. Our results demonstrate that our prediction model outperforms established models with a reduction in estimation error to less than 5 dB, marking a 2X improvement over state-of-the-art models. Overall, this study signifies a substantial advancement in IoT-driven livestock monitoring, presenting robust communication and precise path loss prediction in rugged landscapes.

2.
Soft Matter ; 19(9): 1813-1833, 2023 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-36789855

RESUMO

The classical Prandtl-Tomlinson model is the most famous and efficient method to describe the stick-slip phenomenon and the resulting friction between a slider and a corrugated substrate. It is widely used in all studies of frictional physics and notably in nanotribology. However, it considers a rigid or undeformable substrate and therefore is hardly applicable for investigating the physics of soft matter and in particular biophysics. For this reason, we introduce here a modified model that is capable of taking into consideration a soft or deformable substrate. It is realized by a sequence of elastically bound quadratic energy wells, which represent the corrugated substrate. We study the quasi-static behavior of the system through the equilibrium statistical mechanics. We thus determine the static friction and the deformation of the substrate as a function of temperature and substrate stiffness. The results are of interest for the study of cell motion in biophysics and for haptic and tactile systems in microtechnology.

3.
Sensors (Basel) ; 21(5)2021 Feb 27.
Artigo em Inglês | MEDLINE | ID: mdl-33673421

RESUMO

This Editorial analyzes the manuscripts accepted, after a careful peer-reviewed process, for the special issue "IoT Sensing Systems for Traffic Monitoring and for Automated and Connected Vehicles" of the Sensors MDPI journal.[...].

4.
Sensors (Basel) ; 21(5)2021 Mar 03.
Artigo em Inglês | MEDLINE | ID: mdl-33802365

RESUMO

One of the most challenging tasks for network operators is implementing accurate per-packet monitoring, looking for signs of performance degradation, security threats, and so on. Upon critical event detection, corrective actions must be taken to keep the network running smoothly. Implementing this mechanism requires the analysis of packet streams in a real-time (or close to) fashion. In a softwarized network context, Stream Processing Systems (SPSs) can be adopted for this purpose. Recent solutions based on traditional SPSs, such as Storm and Flink, can support the definition of general complex queries, but they show poor performance at scale. To handle input data rates in the order of gigabits per seconds, programmable switch platforms are typically used, although they offer limited expressiveness. With the proposed approach, we intend to offer high performance and expressive power in a unified framework by solely relying on SPSs for multicores. Captured packets are translated into a proper tuple format, and network monitoring queries are applied to tuple streams. Packet analysis tasks are expressed as streaming pipelines, running on general-purpose programmable network devices, and a second stage of elaboration can process aggregated statistics from different devices. Experiments carried out with an example monitoring application show that the system is able to handle realistic traffic at a 10 Gb/s speed. The same application scales almost up to 20 Gb/s speed thanks to the simple optimizations of the underlying framework. Hence, the approach proves to be viable and calls for the investigation of more extensive optimizations to support more complex elaborations and higher data rates.

5.
Sensors (Basel) ; 22(1)2021 Dec 30.
Artigo em Inglês | MEDLINE | ID: mdl-35009814

RESUMO

Livestock farming is, in most cases in Europe, unsupervised, thus making it difficult to ensure adequate control of the position of the animals for the improvement of animal welfare. In addition, the geographical areas involved in livestock grazing usually have difficult access with harsh orography and lack of communications infrastructure, thus the need to provide a low-power livestock localization and monitoring system is of paramount importance, which is crucial not for a sustainable agriculture, but also for the protection of native breeds and meats thanks to their controlled supervision. In this context, this work presents an Internet of things (IoT)-based system integrating low-power wide area (LPWA) technology, cloud, and virtualization services to provide real-time livestock location monitoring. Taking into account the constraints coming from the environment in terms of energy supply and network connectivity, our proposed system is based on a wearable device equipped with inertial sensors, Global Positioning System (GPS) receiver, and LoRaWAN transceiver, which can provide a satisfactory compromise between performance, cost, and energy consumption. At first, this article provides the state-of-the-art localization techniques and technologies applied to smart livestock. Then, we proceed to provide the hardware and firmware co-design to achieve very low energy consumption, thus providing a significant positive impact to the battery life. The proposed platform has been evaluated in a pilot test in the northern part of Italy, evaluating different configurations in terms of sampling period, experimental duration, and number of devices. The results are analyzed and discussed for packet delivery ratio, energy consumption, localization accuracy, battery discharge measurement, and delay.


Assuntos
Internet das Coisas , Gado , Animais , Computação em Nuvem , Fazendas , Monitorização Fisiológica
6.
Phys Biol ; 17(5): 056002, 2020 08 27.
Artigo em Inglês | MEDLINE | ID: mdl-32464604

RESUMO

Single-molecule force spectroscopy techniques allow for the measurement of several static and dynamic features of macromolecules of biological origin. In particular, atomic force microscopy, used with a variable pulling rate, provides valuable information on the folding/unfolding dynamics of proteins. We propose here two different models able to describe the out-of-equilibrium statistical mechanics of a chain composed of bistable units. These latter represent the protein domains, which can be either folded or unfolded. Both models are based on the Langevin approach and their implementation allows for investigating the effect of the pulling rate and of the device intrinsic elasticity on the chain unfolding response. The theoretical results (both analytical and numerical) have been compared with experimental data concerning the unfolding of the titin and filamin proteins, eventually obtaining a good agreement over a large range of the pulling rates.


Assuntos
Conectina/química , Filaminas/química , Dobramento de Proteína , Imagem Individual de Molécula , Fenômenos Mecânicos , Microscopia de Força Atômica , Modelos Químicos
7.
J Chem Phys ; 149(5): 054901, 2018 Aug 07.
Artigo em Inglês | MEDLINE | ID: mdl-30089392

RESUMO

Several experimental methods are usually applied for stretching single molecules and provide valuable insights about the static and dynamic responses induced by externally applied forces. This analysis is even more important for macromolecules exhibiting conformational transitions, thereby corresponding to folding/unfolding processes. With the aim of introducing the statistical mechanics of such phenomena, we apply here the spin variables approach based on a set of discrete quantities able to identify the folded or unfolded state of the chain units. First, we obtain the macroscopic thermodynamics of the chain from its microscopic description. For small systems, far from the thermodynamic limit, this result depends on the applied boundary condition (e.g., isometric or isotensional), which corresponds to the considered statistical ensemble. Then, we develop the theory for the two-state extensible freely jointed chain, where the elastic constant of the units, a property often neglected, plays a central role in defining the force-extension curve. For this system, the partition function of the isometric ensemble can be written in closed form in terms of the natural generalization of the Hermite polynomials, obtained by considering negative indices. These results are relevant for the interpretation of stretching experiments, operated from the entropic regime up to the unfolding processes.

8.
Soft Matter ; 13(38): 6877-6893, 2017 Oct 04.
Artigo em Inglês | MEDLINE | ID: mdl-28828447

RESUMO

The force-extension response of chains composed of bistable (or multistable) units strongly depends on the applied boundary conditions. As a matter of fact, isotensional conditions (soft devices) lead to a plateau-like response, whereas isometric conditions (hard devices) lead to a sawtooth-like pattern. We develop an equilibrium statistical mechanics methodology, based on the introduction of a set of discrete or spin variables, which is able to describe the thermal and mechanical properties of a folding and unfolding chain under arbitrary external conditions. In particular, we will work within the Gibbs and Helmholtz ensembles, which correspond to soft and hard devices, respectively. We introduce a one-dimensional system composed of multistable units and a bistable freely jointed chain. For both systems we obtain explicit expressions for the force-extension relation and we study the spinoidal behavior induced by the isometric conditions.

9.
Eur Phys J E Soft Matter ; 38(5): 131, 2015 May.
Artigo em Inglês | MEDLINE | ID: mdl-25998172

RESUMO

The mechanics of fiber bundles has been largely investigated in order to understand their complex failure modes. Under a mechanical load, the fibers fail progressively while the load is redistributed among the unbroken fibers. The classical fiber bundle model captures the most important features of this rupture process. On the other hand, the homogenization techniques are able to evaluate the stiffness degradation of bulk solids with a given population of cracks. However, these approaches are inadequate to determine the effective response of a degraded bundle where breaks are induced by non-mechanical actions. Here, we propose a method to analyze the behavior of a fiber bundle, undergoing a random distribution of breaks, by considering the intrinsic response of the fibers and the visco-elastic interactions among them. We obtain analytical solutions for simple configurations, while the most general cases are studied by Monte Carlo simulations. We find that the degradation of the effective bundle stiffness can be described by two scaling regimes: a first exponential regime for a low density of breaks, followed by a power-law regime at increasingly higher break density. For both regimes, we find analytical effective expressions described by specific scaling exponents.

10.
Phys Rev Lett ; 113(25): 255501, 2014 Dec 19.
Artigo em Inglês | MEDLINE | ID: mdl-25554893

RESUMO

Bundles of fibers, wires, or filaments are ubiquitous structures in both natural and artificial materials. We investigate the bundle degradation induced by an external damaging action through a theoretical model describing an assembly of parallel fibers, progressively damaged by a random population of cracks. Fibers in our model interact by means of a lateral linear coupling, thus retaining structural integrity even after substantial damage. Monte Carlo simulations of the Young's modulus degradation for increasing crack density demonstrate a remarkable scaling shift between an exponential and a power-law regime. Analytical solutions of the model confirm this behavior, and provide a thorough understanding of the underlying physics.


Assuntos
Biopolímeros/química , Modelos Teóricos , Fenômenos Mecânicos , Método de Monte Carlo
11.
Phys Rev E ; 109(6-1): 064106, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-39020937

RESUMO

We formulate a short-time expansion for one-dimensional Fokker-Planck equations with spatially dependent diffusion coefficients, derived from stochastic processes with Gaussian white noise, for general values of the discretization parameter 0≤α≤1 of the stochastic integral. The kernel of the Fokker-Planck equation (the propagator) can be expressed as a product of a singular and a regular term. While the singular term can be given in closed form, the regular term can be computed from a Taylor expansion whose coefficients obey simple ordinary differential equations. We illustrate the application of our approach with examples taken from statistical physics and biophysics. Furthermore, we show how our formalism allows us to define a class of stochastic equations which can be treated exactly. The convergence of the expansion cannot be guaranteed independently from the discretization parameter α.

12.
Phys Rev E ; 107(3-2): 035001, 2023 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-37073030

RESUMO

The fracture behavior of brittle and ductile materials can be strongly influenced by thermal fluctuations, especially in micro- and nanodevices as well as in rubberlike and biological materials. However, temperature effects, in particular on the brittle-to-ductile transition, still require a deeper theoretical investigation. As a step in this direction we propose a theory, based on equilibrium statistical mechanics, able to describe the temperature-dependent brittle fracture and brittle-to-ductile transition in prototypical discrete systems consisting in a lattice with breakable elements. Concerning the brittle behavior, we obtain closed form expressions for the temperature-dependent fracture stress and strain, representing a generalized Griffith criterion, ultimately describing the fracture as a genuine phase transition. With regard to the brittle-to-ductile transition, we obtain a complex critical scenario characterized by a threshold temperature between the two fracture regimes (brittle and ductile), an upper and a lower yield strength, and a critical temperature corresponding to the complete breakdown. To show the effectiveness of the proposed models in describing thermal fracture behaviors at small scales, we successfully compare our theoretical results with molecular dynamics simulations of Si and GaN nanowires.

13.
J Mol Biol ; 435(20): 168263, 2023 10 15.
Artigo em Inglês | MEDLINE | ID: mdl-37678705

RESUMO

Chromatin in the nucleus undergoes mechanical stresses from different sources during the various stages of cell life. Here a trinucleosome array is used as the minimal model to study the mechanical response to applied stress at the molecular level. By using large-scale, all-atom steered-molecular dynamics simulations, we show that the largest part of mechanical stress in compression is accommodated by the DNA linkers joining pairs of nucleosomes, which store the elastic energy accumulated by the applied force. Different mechanical instabilities (Euler bending, Brazier kinking, twist-bending) can deform the DNA canonical structure, as a function of the increasing force load. An important role of the histone tails in assisting the DNA deformation is highlighted. The overall response of the smallest chromatin fragment to compressive stress leaves the nucleosome assembly with a substantial plastic deformation and localised defects, which can have a potential impact on DNA transcription, downstream signaling pathways, the regulation of gene expression, and DNA repair.


Assuntos
Cromatina , Nucleossomos , Cromatina/química , DNA/química , Histonas/química , Conformação de Ácido Nucleico , Nucleossomos/química
14.
Phys Rev E ; 107(4-1): 044111, 2023 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-37198762

RESUMO

Geometric Brownian motion is an exemplary stochastic processes obeying multiplicative noise, with widespread applications in several fields, e.g., in finance, in physics, and biology. The definition of the process depends crucially on the interpretation of the stochastic integrals which involves the discretization parameter α with 0≤α≤1, giving rise to the well-known special cases α=0 (Itô), α=1/2 (Fisk-Stratonovich), and α=1 (Hänggi-Klimontovich or anti-Itô). In this paper we study the asymptotic limits of the probability distribution functions of geometric Brownian motion and some related generalizations. We establish the conditions for the existence of normalizable asymptotic distributions depending on the discretization parameter α. Using the infinite ergodicity approach, recently applied to stochastic processes with multiplicative noise by E. Barkai and collaborators, we show how meaningful asymptotic results can be formulated in a transparent way.

15.
J Chem Phys ; 137(24): 244907, 2012 Dec 28.
Artigo em Inglês | MEDLINE | ID: mdl-23277956

RESUMO

Recent developments of microscopic mechanical experiments allow the manipulation of individual polymer molecules in two main ways: uniform stretching by external forces and non-uniform stretching by external fields. Many results can be thereby obtained for specific kinds of polymers and specific geometries. In this work, we describe the non-uniform stretching of a single, non-branched polymer molecule by an external field (e.g., fluid in uniform motion, or uniform electric field) by a universal physical framework, which leads to general conclusions on different types of polymers. We derive analytical results both for the freely-jointed chain and the worm-like chain models based on classical statistical mechanics. Moreover, we provide a Monte Carlo numerical analysis of the mechanical properties of flexible and semiflexible polymers anchored at one end. The simulations confirm the analytical achievements, and moreover allow to study the situations where the theory cannot provide explicit and useful results. In all cases, we evaluate the average conformation of the polymer and its fluctuation statistics as a function of the chain length, bending rigidity, and field strength.

16.
J Chem Phys ; 136(15): 154906, 2012 Apr 21.
Artigo em Inglês | MEDLINE | ID: mdl-22519349

RESUMO

Stretching experiments on single molecules of arbitrary length opened the way for studying the statistical mechanics of small systems. In many cases in which the thermodynamic limit is not satisfied, different macroscopic boundary conditions, corresponding to different statistical mechanics ensembles, yield different force-displacement curves. We formulate analytical expressions and develop Monte Carlo simulations to quantitatively evaluate the difference between the Helmholtz and the Gibbs ensembles for a wide range of polymer models of biological relevance. We consider generalizations of the freely jointed chain and of the worm-like chain models with extensible bonds. In all cases we show that the convergence to the thermodynamic limit upon increasing contour length is described by a suitable power law and a specific scaling exponent, characteristic of each model.


Assuntos
Polímeros/química , Termodinâmica , Elasticidade , Método de Monte Carlo
17.
Phys Rev E ; 103(5-1): 052116, 2021 May.
Artigo em Inglês | MEDLINE | ID: mdl-34134271

RESUMO

We study the relation between stochastic thermodynamics and nonequilibrium thermodynamics by evaluating the entropy production and the relation between fluxes and forces in a harmonic system with N particles in contact with N different reservoirs. We suppose that the system is in a nonequilibrium stationary state in a first phase and we study the relaxation to equilibrium in a second phase. During this relaxation, we can identify the linear relation between fluxes and forces satisfying the Onsager reciprocity and we obtain a nonlinear expression for the entropy production. Only when forces and fluxes are small does the entropic production turn into a quadratic form in the forces, as predicted by the Onsager theory.

19.
Intern Emerg Med ; 12(7): 981-991, 2017 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-28477287

RESUMO

The emergency management of acute severe bleeding in trauma patients has changed significantly in recent years. In particular, greater attention is now being devoted to a prompt assessment of coagulation alterations, which allows for immediate haemostatic resuscitation procedures when necessary. The importance of an early trauma-induced coagulopathy (TIC) diagnosis has led physicians to increase the efforts to better understand the pathophysiological alterations observed in the haemostatic system after traumatic injuries. As yet, the knowledge of TIC is not exhaustive, and further studies are needed. The aim of this review is to gather all the currently available data and information in an attempt to gain a better understanding of TIC. A comprehensive literature search was performed using MEDLINE database. The bibliographies of relevant articles were screened for additional publications. In major traumas, coagulopathic bleeding stems from a complex interplay among haemostatic and inflammatory systems, and is characterized by a multifactorial dysfunction. In the abundance of biochemical and pathophysiological changes occurring after trauma, it is possible to discern endogenously induced primary predisposing conditions and exogenously induced secondary predisposing conditions. TIC remains one of the most diagnostically and therapeutically challenging condition.


Assuntos
Coagulação Intravascular Disseminada/etiologia , Coagulação Intravascular Disseminada/fisiopatologia , Ferimentos e Lesões/complicações , Endotélio/fisiopatologia , Fibrinogênio/provisão & distribuição , Humanos , Ferimentos e Lesões/fisiopatologia
20.
Microsyst Nanoeng ; 2: 16062, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-31057841

RESUMO

The killing of tumor cells by ionizing radiation beams in cancer radiotherapy is currently based on a rather empirical understanding of the basic mechanisms and effectiveness of DNA damage by radiation. By contrast, the mechanical behaviour of DNA encompassing sequence sensitivity and elastic transitions to plastic responses is much better understood. A novel approach is proposed here based on a micromechanical Silicon Nanotweezers device. This instrument allows the detailed biomechanical characterization of a DNA bundle exposed to an ionizing radiation beam delivered here by a therapeutic linear particle accelerator (LINAC). The micromechanical device endures the harsh environment of radiation beams and still retains molecular-level detection accuracy. In this study, the first real-time observation of DNA damage by ionizing radiation is demonstrated. The DNA bundle degradation is detected by the micromechanical device as a reduction of the bundle stiffness, and a theoretical model provides an interpretation of the results. These first real-time observations pave the way for both fundamental and clinical studies of DNA degradation mechanisms under ionizing radiation for improved tumor treatment.

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