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1.
J Phys Chem A ; 128(1): 182-190, 2024 Jan 11.
Artigo em Inglês | MEDLINE | ID: mdl-38118433

RESUMO

We present a comprehensive theoretical study of valence-shell photoionization of the CO2 molecule by using the XCHEM methodology. This method makes use of a fully correlated molecular electronic continuum at a level comparable to that provided by state-of-the-art quantum chemistry packages in bound-state calculations. The calculated total and angularly resolved photoionization cross sections are presented and discussed, with particular emphasis on the series of autoionizing resonances that appear between the first and the fourth ionization thresholds. Ten series of Rydberg autoionizing states are identified, including some not previously reported in the literature, and their energy positions and widths are provided. This is relevant in the context of ongoing experimental and theoretical efforts aimed at observing in real-time (attosecond time scale) the autoionization dynamics in molecules.

2.
J Chem Phys ; 161(2)2024 Jul 14.
Artigo em Inglês | MEDLINE | ID: mdl-38984954

RESUMO

Over the years, theoretical calculations and scalable computer simulations have complemented ultrafast experiments, as they offer the advantage of overcoming experimental restrictions and having access to the whole dynamics. This synergy between theory and experiment promises to yield a deeper understanding of photochemical processes, offering valuable insights into the behavior of complex systems at the molecular level. However, the ability of theoretical models to predict ultrafast experimental outcomes has remained largely unexplored. In this work, we aim to predict the electron diffraction signals of an upcoming ultrafast photochemical experiment using high-level electronic structure calculations and non-adiabatic dynamics simulations. In particular, we perform trajectory surface hopping with extended multi-state complete active space with second order perturbation simulations for understanding the photodissociation of cyclobutanone (CB) upon excitation at 200 nm. Spin-orbit couplings are considered for investigating the role of triplet states. Our simulations capture the bond cleavage after ultrafast relaxation from the 3s Rydberg state, leading to the formation of the previously observed primary photoproducts: CO + cyclopropane/propene (C3 products), ketene, and ethene (C2 products). The ratio of the C3:C2 products is found to be about 1:1. Within 700 fs, the majority of trajectories transition to their electronic ground state, with a small fraction conserving the initial cyclobutanone ring structure. We found a minimal influence of triplet states during the early stages of the dynamics, with their significance increasing at later times. We simulate MeV-ultrafast electron diffraction (UED) patterns from our trajectory results, linking the observed features with specific photoproducts and the underlying structural dynamics. Our analysis reveals highly intense features in the UED signals corresponding to the photochemical processes of CB. These features offer valuable insights into the experimental monitoring of ring opening dynamics and the formation of C3 and C2 photoproducts.

3.
J Chem Phys ; 156(11): 114304, 2022 Mar 21.
Artigo em Inglês | MEDLINE | ID: mdl-35317567

RESUMO

The photodissociation dynamics of alkyl iodides along the C-I bond are captured by attosecond extreme-ultraviolet (XUV) transient absorption spectroscopy employing resonant ∼20 fs UV pump pulses. The methodology of previous experiments on CH3I [Chang et al., J. Chem. Phys. 154, 234301 (2021)] is extended to the investigation of a C-I bond-breaking reaction in the dissociative A-band of C2H5I, i-C3H7I, and t-C4H9I. Probing iodine 4d core-to-valence transitions in the XUV enables one to map wave packet bifurcation at a conical intersection in the A-band as well as coherent vibrations in the ground state of the parent molecules. Analysis of spectroscopic bifurcation signatures yields conical intersection crossing times of 15 ± 4 fs for CH3I, 14 ± 5 fs for C2H5I, and 24 ± 4 fs for i-C3H7I and t-C4H9I, respectively. Observations of coherent vibrations, resulting from a projection of A-band structural dynamics onto the ground state by resonant impulsive stimulated Raman scattering, indirectly reveal multimode C-I stretch and CCI bend vibrations in the A-bands of C2H5I, i-C3H7I, and t-C4H9I.

4.
Molecules ; 27(3)2022 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-35164254

RESUMO

Small structural alterations of the purine/pyrimidine core have been related to important photophysical changes, such as the loss of photostability. Similarly to canonical nucleobases, solute-solvent interactions can lead to a change in the excited state lifetimes and/or to the interplay of different states in the photophysics of these modified nucleobases. To shed light on both effects, we here report a complete picture of the absorption spectra and excited state deactivation of deoxyguanosine and its closely related derivative, deoxydeazaguanosine, in water and methanol through the mapping of the excited state potential energy surfaces and molecular dynamics simulations at the TD-DFT level of theory. We show that the N by CH exchange in the imidazole ring of deoxyguanosine translates into a small red-shift of the bright states and slightly faster dynamics. In contrast, changing solvent from water to methanol implies the opposite, i.e., that the deactivation of both systems to the ground state is significantly hindered.

5.
Faraday Discuss ; 228(0): 349-377, 2021 05 27.
Artigo em Inglês | MEDLINE | ID: mdl-33571330

RESUMO

We present a theoretical study of the electron and nuclear dynamics that would arise in an attosecond two-color XUV-pump/XUV-probe experiment in glycine. In this scheme, the broadband pump pulse suddenly ionizes the molecule and creates an electronic wave packet that subsequently evolves under the influence of the nuclear motion until it is finally probed by the second XUV pulse. To describe the different steps of such an experiment, we have combined a multi-reference static-exchange scattering method with a trajectory surface hopping approach. We show that by changing the central frequency of the pump pulse, i.e., by engineering the initial electronic wave packet with the pump pulse, one can drive the cation dynamics into a specific fragmentation pathway. Reminiscence of this early electron dynamics can be observed in specific fragmentation channels (not all of them) as a function of the pump-probe delay and in time-resolved photoelectron spectra at specific photoelectron energies. The optimum conditions to visualize the initial electronic coherence in photoelectron and photo-ion spectra depend very much on the characteristics of the pump pulse as well as on the electronic structure of the molecule under study.

6.
J Phys Chem A ; 124(50): 10422-10433, 2020 Dec 17.
Artigo em Inglês | MEDLINE | ID: mdl-33284609

RESUMO

The substitution of canonical nucleobases by thiated analogues in natural DNA has been exploited in pharmacology, photochemotherapy, and structural biology. Thionucleobases react with adjacent thymines leading to 6-4 pyrimidine-pyrimidone photoproducts (6-4PPs), which are a major source of DNA photodamage, in particular intrastrand cross-linked photolesions. Here, we study the mechanism responsible for the formation of 6-4PPs in thionucleobases by employing quantum-mechanical calculations. We use multiconfiguration pair-density functional theory, complete active space second-order perturbation theory, and Kohn-Sham density functional theory. Scrutinizing the photochemistry of thionucleobases can elucidate the reaction mechanism of these prodrugs and identify the role that triplet excited states play in the generation of photolesions in the natural biopolymer. Three different possible mechanisms to generate the 6-4PPs are presented, and we conclude that the use of multireference approaches is indispensable to capture important features of the potential energy surface.


Assuntos
Dano ao DNA , DNA/efeitos da radiação , Compostos de Sulfidrila/química , Reagentes de Ligações Cruzadas/química , DNA/química , Dímeros de Pirimidina/química , Teoria Quântica
7.
J Chem Phys ; 152(1): 014304, 2020 Jan 07.
Artigo em Inglês | MEDLINE | ID: mdl-31914745

RESUMO

Clocking of electronically and vibrationally state-resolved channels of the fast photodissociation of CH3I in the A-band is re-examined in a combined experimental and theoretical study. Experimentally, a femtosecond pump-probe scheme is employed in the modality of resonant probing by resonance enhanced multiphoton ionization (REMPI) of the methyl fragment in different vibrational states and detection through fragment velocity map ion (VMI) imaging as a function of the time delay. We revisit excitation to the center of the A-band at 268 nm and report new results for excitation to the blue of the band center at 243 nm. Theoretically, two approaches have been employed to shed light into the observations: first, a reduced dimensionality 4D nonadiabatic wavepacket calculation using the potential energy surfaces by Xie et al. [J. Phys. Chem. A 104, 1009 (2000)]; and second, a full dimension 9D trajectory surface-hopping calculation on the same potential energy surfaces, including the quantization of vibrational states of the methyl product. In addition, high level ab initio electronic structure calculations have been carried out to describe the CH3 3pz Rydberg state involved in the (2 + 1) REMPI probing process, as a function of the carbon-iodine (C-I) distance. A general qualitative agreement is obtained between experiment and theory, but the effect of methyl vibrational excitation in the umbrella mode on the clocking times is not well reproduced. The theoretical results reveal that no significant effect on the state-resolved appearance times is exerted by the nonadiabatic crossing through the conical intersection present in the first absorption band. The vibrationally state resolved clocking times observed experimentally can be rationalized when the (2 + 1) REMPI probing process is considered. None of the other probing methods applied thus far, i.e., multiphoton ionization photoelectron spectroscopy, soft X-ray inner-shell photoelectron spectroscopy, VUV single-photon ionization, and XUV core-to-valence transient absorption spectroscopy, have been able to provide quantum state-resolved (vibrational) clocking times. More experiments would be needed to disentangle the fine details in the clocking times and dissociation dynamics arising from the detection of specific quantum-states of the molecular fragments.

8.
J Comput Chem ; 40(6): 794-810, 2019 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-30593705

RESUMO

The presence of nonadiabatic effects during the interaction of small molecules with metals has been observed experimentally for the last decades. Specially remarkable are the effects found for NO/Au, where experiments have suggested the presence of very strong vibronic coupling during the molecular scattering. However, the accurate inclusion of the nonadiabatic effects in periodic boundary conditions (PBC) theoretical methods remain an unapproachable challenge. Here, aiming to give some theoretical insight to the strong vibronic coupling, we have adopted a pragmatic point of view, taking use of an auxiliary simplified system, NO/Au3 . We show the importance of nonadiabatic coupling, during the scattering of NO from a Au3 cluster, using a diabatic representation of 12 electronic states of the system, including a few charge-transfer states. Our diabatic representation is obtained by rotating the orbital and configuration interaction (CI) vectors of a restricted active space (RAS) wavefunction. We present a strategy for extracting the best effective manifold of states relevant to the system, below some prescribed energy, directly from the RAS CI vectors. This scheme is able to disentangle a large dense manifold of adiabatic states with strong coupling and crossings. This approach is also shown to work for multireference configuration interaction (MRCI). By performing quantum propagations, we observed an increase in vibrational redistribution with increasing initial vibrational or translational energies. We suggest that these nonadiabatic effects should also be present at smaller energies in larger clusters. © 2018 Wiley Periodicals, Inc.

9.
Phys Rev Lett ; 122(25): 253203, 2019 Jun 28.
Artigo em Inglês | MEDLINE | ID: mdl-31347882

RESUMO

We have determined spectral phases of Ne autoionizing states from extreme ultraviolet and midinfrared attosecond interferometric measurements and ab initio full-electron time-dependent theoretical calculations in an energy interval where several of these states are coherently populated. The retrieved phases exhibit a complex behavior as a function of photon energy, which is the consequence of the interference between paths involving various resonances. In spite of this complexity, we show that phases for individual resonances can still be obtained from experiment by using an extension of the Fano model of atomic resonances. As simultaneous excitation of several resonances is a common scenario in many-electron systems, the present work paves the way to reconstruct electron wave packets coherently generated by attosecond pulses in systems larger than helium.

10.
Phys Chem Chem Phys ; 21(30): 16497-16504, 2019 Aug 14.
Artigo em Inglês | MEDLINE | ID: mdl-31322631

RESUMO

We present a detailed theoretical study of valence-shell photoionization of the oxygen molecule by using the recently proposed XCHEM method. This method makes use of a hybrid Gaussian and B-spline basis in the framework of a close-coupling approach to describe electron correlation in the molecular electronic continuum at a level comparable to that provided by multi-reference configuration interaction methods in bound state calculations. The computed total and partial photoionization cross sections are presented and discussed, with emphasis on the series of autoionizing resonances that appear between the first and the fourth ionization thresholds, i.e., photon energies between 12 and 18 eV. More than fifty autoionizing states are identified, including series not previously reported in the literature, and their energy positions and widths are provided. The present results illustrate the potential of the XCHEM approach to accurately describe molecular autoionization, which is mostly due to electron correlation. This is relevant in view of current experimental efforts aimed at providing real-time (attosecond) imaging of autoionization dynamics in molecules.

11.
Phys Chem Chem Phys ; 21(19): 10038-10051, 2019 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-31046039

RESUMO

Time-resolving and controlling coupled electronic and nuclear dynamics at conical intersections on the sub-femtosecond to few-femtosecond time scale is among the challenging goals of attosecond physics. Here we present numerical simulations of time-resolved photoelectron spectroscopy of such dynamics in NO2, where the coupled electron-nuclear motion at the 2A1/2B2 conical intersection is steered on the sub-laser-cycle time scale by a nearly single-cycle, waveform controlled mid-infrared laser pulse. For a rigorous description of the photoionization dynamics, we employ ab initio energy- and geometry-resolved photoionization matrix elements obtained with the multichannel R-matrix method, using a multiconfigurational description of the molecule and a newly developed algorithm to generate photoionization dipoles that are phase consistent on the level of both the neutral and the ionic states. We find that for sufficient molecular alignment, the time- and energy-resolved anisotropy parameters of the photoelectron angular distributions provide a particularly clear picture of both the ultrafast natural molecular dynamics at the conical intersection and its modifications by the control pulse. In particular, changes in the electronic and nuclear configurations induced by the control pulse lead to the appearance of non-vanishing odd anisotropy parameters in the photoelectron spectra. These are absent in the spectra obtained without the control pulse and therefore provide sensitive, background-free diagnostic of the control.

12.
Phys Chem Chem Phys ; 21(42): 23620-23625, 2019 Nov 14.
Artigo em Inglês | MEDLINE | ID: mdl-31624812

RESUMO

We predict anti-alignment dynamics in the excited state of H2+ or related homonuclear dimers in the presence of a strong field. This effect is a general indirect outcome of the strong transition dipole and large polarizabilities typically used to control or to induce alignment in the ground state. In the excited state, however, the polarizabilities have the opposite sign compared to those in the ground state, generating a torque that aligns the molecule perpendicular to the field, deeming any laser-control strategy impossible.

13.
Phys Chem Chem Phys ; 21(26): 14250-14260, 2019 Jul 14.
Artigo em Inglês | MEDLINE | ID: mdl-30565605

RESUMO

The photodissociation dynamics and stereodynamics of ethyl iodide from the origin of the second absorption B-band have been investigated combining pulsed slicFe imaging with resonance enhanced multiphoton ionization (REMPI) detection of all fragments, I(2P3/2), I*(2P1/2) and C2H5. The I*(2P1/2) atom action spectrum recorded as a function of the excitation wavelength permits one to identify and select the 0 origin of this band at 201.19 nm (49 704 cm-1). Translational energy distributions and angular distributions for all fragments and semiclassical Dixon's bipolar moments for the C2H5 fragment are presented and discussed along with high-level ab initio calculations of potential energy curves as a function of the C-I distance. A predissociative mechanism governs the dynamics where in a first step a bound Rydberg state corresponding to the 5pπI→ 6sI transition is populated by the 201.19 nm-photon absorption. A curve crossing with a repulsive state located within the Franck-Condon geometry leads to direct dissociation into the major channel C2H5 + I*(2P1/2). A small amount of I(2P3/2) atoms is nevertheless observed and presumably attributed to a second curve crossing with a repulsive state from the A-band.

14.
J Phys Chem A ; 123(14): 3074-3079, 2019 Apr 11.
Artigo em Inglês | MEDLINE | ID: mdl-30807166

RESUMO

Nitroimidazole exhibits a remarkable regioselective fragmentation subsequent to valence ionization, which is characterized by ejection of NO. As NO is also considered to be an effective radiosensitizer, we investigated its production efficiency as a function of isomeric composition (the site of the NO2 nitro group). We observe strong dependence in the 8.6-15 eV binding energy range, and moreover, that the production of NO can be effectively suppressed by methylation of nitroimidazole. This behavior can be understood by modification of the valence electronic structure with respect to the dissociation threshold, which gives rise to varying effective density of dissociative states. We find the NO yield to follow the efficiency of the nitroimidazole dervivatives as radiosensitizers, found in preclinical studies.

15.
Phys Chem Chem Phys ; 20(5): 3490-3503, 2018 Jan 31.
Artigo em Inglês | MEDLINE | ID: mdl-29335697

RESUMO

The photodissociation dynamics of bromoiodomethane (CH2BrI) have been investigated at the maximum of the first A and second A' absorption bands, at 266 and 210 nm excitation wavelengths, respectively, using velocity map and slice imaging techniques in combination with a probe detection of both iodine and bromine fragments, I(2P3/2), I*(2P1/2), Br(2P3/2) and Br*(2P1/2) via (2 + 1) resonance enhanced multiphoton ionization. Experimental results, i.e. translational energy and angular distributions, are reported and discussed in conjunction with high level ab initio calculations of potential energy curves and absorption spectra. The results indicate that in the A-band, direct dissociation through the 5A' excited state leads to the I(2P3/2) channel while I*(2P1/2) atoms are produced via the 5A' → 4A'/4A'' nonadiabatic crossing. The presence of Br and Br* fragments upon excitation to the A-band is attributed to indirect dissociation via a curve crossing between the 5A' with upper excited states such as the 9A'. The A'-band is characterized by a strong photoselectivity leading exclusively to the Br(2P3/2) and Br*(2P1/2) channels, which are likely produced by dissociation through the 9A' excited state. Avoided crossings between several excited states from both the A and A' bands entangle however the possible reaction pathways.

16.
Phys Chem Chem Phys ; 20(32): 20766-20778, 2018 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-30020280

RESUMO

A comparative study of the ultrafast photodissociation dynamics of the dihalomethanes CH2ICl and CH2BrI has been carried out at 268 nm, around the maximum of the first absorption band, employing femtosecond velocity map ion imaging in conjunction with high level ab initio electronic structure calculations and full dimension on-the-fly trajectory calculations including surface hopping. Total translational energy distributions and angular distributions of the iodine fragments as well as reaction times for the C-I bond cleavage are presented and discussed along with the computed absorption spectra, potential energy curves and trajectories. The revealed dynamics is mainly governed by absorption to the 5A' state for CH2BrI while two dissociation pathways, through the 4A' or 5A' states, are in competition for CH2lCI. An anchor effect due to the substituent halogen atom (Br or Cl), which implies significant rotational motion of the dissociating molecule, characterizes the photodissociation in both dihalomethanes and leads to a remarkable rotational energy of the radical co-fragment. This energy flux into the internal degrees of freedom of the molecules is the main key factor governing the real time reaction dynamics.

17.
Phys Chem Chem Phys ; 17(20): 13183-200, 2015 May 28.
Artigo em Inglês | MEDLINE | ID: mdl-25835746

RESUMO

Strong ultrashort laser pulses have opened new avenues for the manipulation of photochemical processes like photoisomerization or photodissociation. The presence of light intense enough to reshape the potential energy surfaces may steer the dynamics of both electrons and nuclei in new directions. A controlled laser pulse, precisely defined in terms of spectrum, time and intensity, is the essential tool in this type of approach to control chemical dynamics at a microscopic level. In this Perspective we examine the current strategies developed to achieve control of chemical processes with strong laser fields, as well as recent experimental advances that demonstrate that properties like the molecular absorption spectrum, the state lifetimes, the quantum yields and the velocity distributions in photodissociation processes can be controlled by the introduction of carefully designed strong laser fields.

18.
Phys Chem Chem Phys ; 16(19): 8812-8, 2014 May 21.
Artigo em Inglês | MEDLINE | ID: mdl-24418888

RESUMO

The correlation between chemical structure and dynamics has been explored in a series of molecules with increasing structural complexity in order to investigate its influence on bond cleavage reaction times in a photodissociation event. Femtosecond time-resolved velocity map imaging spectroscopy reveals specificity of the ultrafast carbon-iodine (C-I) bond breakage for a series of linear (unbranched) and branched alkyl iodides, due to the interplay between the pure reaction coordinate and the rest of the degrees of freedom associated with the molecular structure details. Full-dimension time-resolved dynamics calculations support the experimental evidence and provide insight into the structure-dynamics relationship to understand structural control on time-resolved reactivity.


Assuntos
Hidrocarbonetos Halogenados/química , Simulação de Dinâmica Molecular , Estrutura Molecular , Processos Fotoquímicos , Fatores de Tempo
19.
Chem Sci ; 15(9): 3203-3213, 2024 Feb 28.
Artigo em Inglês | MEDLINE | ID: mdl-38425510

RESUMO

The valence-shell dissociative photoionization of methyl iodide (CH3I) is studied using double imaging photoelectron photoion coincidence (i2 PEPICO) spectroscopy in combination with highly-tunable synchrotron radiation from synchrotron SOLEIL. The experimental results are complemented by new high-level ab initio calculations of the potential energy curves of the relevant electronic states of the methyl iodide cation (CH3I+). An elusive conical intersection is found to mediate internal conversion from the initially populated first excited state, CH3I+(Ã2A1), into the ground cationic state, leading to the formation of methyl ions (CH3+). The reported threshold photoelectron spectrum for CH3+ reveals that the ν5 scissors vibrational mode promotes the access to this conical intersection and hence, the transfer of population. An intramolecular charge transfer takes place simultaneously, prior to dissociation. Upon photoionization into the second excited cationic state, CH3I+(B̃2E), a predissociative mechanism is shown to lead to the formation of atomic I+.

20.
Chemphyschem ; 14(13): 2920-31, 2013 Sep 16.
Artigo em Inglês | MEDLINE | ID: mdl-23893944

RESUMO

The photoinduced excited-state dynamics of the keto and enol forms of cytosine have been investigated by using ab initio surface-hopping to gain an understanding of the outcome of molecular beam femtosecond pump-probe photoionisation spectroscopy experiments. Both singlet and triplet states were included in the dynamics. The results show that triplet states play a significant role in the relaxation of the keto tautomer, whereas they are less important in the enol tautomer. In both forms, the T1 state minimum was found to be too low in energy to be detected in standard photoionisation spectroscopy experiments and therefore experimental decay times should arise from simultaneous relaxation to the ground state and additional intersystem crossing followed by internal conversion to the T1 state. In agreement with available experimental lifetimes, we observed three decay constants of 7, 270 and 1900 fs, the first two coming from the keto tautomer and the third from the enol form. Deactivation of the enol tautomer is due to internal conversion to the ground state through two ethylenic-type S1/S0 conical intersections.


Assuntos
Citosina/química , Isomerismo , Modelos Moleculares
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