Detalhe da pesquisa
1.
Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase.
Genome Res
; 2023 Dec 11.
Artigo
Inglês
| MEDLINE | ID: mdl-38081658
2.
Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data.
Genome Res
; 32(6): 1183-1198, 2022 06.
Artigo
Inglês
| MEDLINE | ID: mdl-35609992
3.
Linking the dynamics of chromatin occupancy and transcription with predictive models.
Genome Res
; 31(6): 1035-1046, 2021 06.
Artigo
Inglês
| MEDLINE | ID: mdl-33893157
4.
Local nucleosome dynamics and eviction following a double-strand break are reversible by NHEJ-mediated repair in the absence of DNA replication.
Genome Res
; 31(5): 775-788, 2021 05.
Artigo
Inglês
| MEDLINE | ID: mdl-33811083
5.
RoboCOP: jointly computing chromatin occupancy profiles for numerous factors from chromatin accessibility data.
Nucleic Acids Res
; 49(14): 7925-7938, 2021 08 20.
Artigo
Inglês
| MEDLINE | ID: mdl-34255854
6.
Genome-wide chromatin footprinting reveals changes in replication origin architecture induced by pre-RC assembly.
Genes Dev
; 29(2): 212-24, 2015 Jan 15.
Artigo
Inglês
| MEDLINE | ID: mdl-25593310
7.
Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding.
Genome Res
; 28(9): 1272-1284, 2018 09.
Artigo
Inglês
| MEDLINE | ID: mdl-30097539
8.
Mapping nucleosome positions using DNase-seq.
Genome Res
; 26(3): 351-64, 2016 Mar.
Artigo
Inglês
| MEDLINE | ID: mdl-26772197
9.
Synergistic and tunable human gene activation by combinations of synthetic transcription factors.
Nat Methods
; 10(3): 239-42, 2013 Mar.
Artigo
Inglês
| MEDLINE | ID: mdl-23377379
10.
Branching process deconvolution algorithm reveals a detailed cell-cycle transcription program.
Proc Natl Acad Sci U S A
; 110(10): E968-77, 2013 Mar 05.
Artigo
Inglês
| MEDLINE | ID: mdl-23388635
11.
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.
Genome Res
; 22(9): 1813-31, 2012 Sep.
Artigo
Inglês
| MEDLINE | ID: mdl-22955991
12.
Learning protein-DNA interaction landscapes by integrating experimental data through computational models.
Bioinformatics
; 30(20): 2868-74, 2014 Oct 15.
Artigo
Inglês
| MEDLINE | ID: mdl-24974204
13.
Stability selection for regression-based models of transcription factor-DNA binding specificity.
Bioinformatics
; 29(13): i117-25, 2013 Jul 01.
Artigo
Inglês
| MEDLINE | ID: mdl-23812975
14.
Global control of cell-cycle transcription by coupled CDK and network oscillators.
Nature
; 453(7197): 944-7, 2008 Jun 12.
Artigo
Inglês
| MEDLINE | ID: mdl-18463633
15.
Genome-wide nucleosome and transcription factor responses to genetic perturbations reveal chromatin-mediated mechanisms of transcriptional regulation.
bioRxiv
; 2024 May 26.
Artigo
Inglês
| MEDLINE | ID: mdl-38826400
16.
Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis.
Nat Genet
; 56(4): 627-636, 2024 Apr.
Artigo
Inglês
| MEDLINE | ID: mdl-38514783
17.
Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading.
Genome Res
; 20(2): 201-11, 2010 Feb.
Artigo
Inglês
| MEDLINE | ID: mdl-19996087
18.
Identification of Tat-SF1 cellular targets by exon array analysis reveals dual roles in transcription and splicing.
RNA
; 17(4): 665-74, 2011 Apr.
Artigo
Inglês
| MEDLINE | ID: mdl-21282347
19.
Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase.
bioRxiv
; 2023 May 26.
Artigo
Inglês
| MEDLINE | ID: mdl-37292814
20.
An ensemble model of competitive multi-factor binding of the genome.
Genome Res
; 19(11): 2101-12, 2009 Nov.
Artigo
Inglês
| MEDLINE | ID: mdl-19720867