Detalhe da pesquisa
1.
Genome-Scale Identification of Essential Metabolic Processes for Targeting the Plasmodium Liver Stage.
Cell
; 179(5): 1112-1128.e26, 2019 11 14.
Artigo
Inglês
| MEDLINE | ID: mdl-31730853
2.
A workflow for annotating the knowledge gaps in metabolic reconstructions using known and hypothetical reactions.
Proc Natl Acad Sci U S A
; 119(46): e2211197119, 2022 Nov 16.
Artigo
Inglês
| MEDLINE | ID: mdl-36343249
3.
Symbolic kinetic models in python (SKiMpy): intuitive modeling of large-scale biological kinetic models.
Bioinformatics
; 39(1)2023 01 01.
Artigo
Inglês
| MEDLINE | ID: mdl-36495209
4.
Emergence of diauxie as an optimal growth strategy under resource allocation constraints in cellular metabolism.
Proc Natl Acad Sci U S A
; 118(8)2021 02 23.
Artigo
Inglês
| MEDLINE | ID: mdl-33602812
5.
NICEpath: Finding metabolic pathways in large networks through atom-conserving substrate-product pairs.
Bioinformatics
; 37(20): 3560-3568, 2021 Oct 25.
Artigo
Inglês
| MEDLINE | ID: mdl-34003971
6.
ARBRE: Computational resource to predict pathways towards industrially important aromatic compounds.
Metab Eng
; 72: 259-274, 2022 07.
Artigo
Inglês
| MEDLINE | ID: mdl-35381376
7.
Spatio-temporal modeling of the crowding conditions and metabolic variability in microbial communities.
PLoS Comput Biol
; 17(7): e1009140, 2021 07.
Artigo
Inglês
| MEDLINE | ID: mdl-34292935
8.
The influence of the crowding assumptions in biofilm simulations.
PLoS Comput Biol
; 17(7): e1009158, 2021 07.
Artigo
Inglês
| MEDLINE | ID: mdl-34292941
9.
Enzyme annotation for orphan and novel reactions using knowledge of substrate reactive sites.
Proc Natl Acad Sci U S A
; 116(15): 7298-7307, 2019 04 09.
Artigo
Inglês
| MEDLINE | ID: mdl-30910961
10.
The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli.
BMC Bioinformatics
; 22(1): 134, 2021 Mar 20.
Artigo
Inglês
| MEDLINE | ID: mdl-33743594
11.
Constraint-based metabolic control analysis for rational strain engineering.
Metab Eng
; 66: 191-203, 2021 07.
Artigo
Inglês
| MEDLINE | ID: mdl-33895366
12.
pyTFA and matTFA: a Python package and a Matlab toolbox for Thermodynamics-based Flux Analysis.
Bioinformatics
; 35(1): 167-169, 2019 01 01.
Artigo
Inglês
| MEDLINE | ID: mdl-30561545
13.
Investigating the deregulation of metabolic tasks via Minimum Network Enrichment Analysis (MiNEA) as applied to nonalcoholic fatty liver disease using mouse and human omics data.
PLoS Comput Biol
; 15(4): e1006760, 2019 04.
Artigo
Inglês
| MEDLINE | ID: mdl-31002661
14.
Statistical inference in ensemble modeling of cellular metabolism.
PLoS Comput Biol
; 15(12): e1007536, 2019 12.
Artigo
Inglês
| MEDLINE | ID: mdl-31815929
15.
Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models.
PLoS Comput Biol
; 15(5): e1007036, 2019 05.
Artigo
Inglês
| MEDLINE | ID: mdl-31083653
16.
Uncertainty reduction in biochemical kinetic models: Enforcing desired model properties.
PLoS Comput Biol
; 15(8): e1007242, 2019 08.
Artigo
Inglês
| MEDLINE | ID: mdl-31430276
17.
Modeling metabolic networks of individual bacterial agents in heterogeneous and dynamic soil habitats (IndiMeSH).
PLoS Comput Biol
; 15(6): e1007127, 2019 06.
Artigo
Inglês
| MEDLINE | ID: mdl-31216273
18.
Particle-Based Simulation Reveals Macromolecular Crowding Effects on the Michaelis-Menten Mechanism.
Biophys J
; 117(2): 355-368, 2019 07 23.
Artigo
Inglês
| MEDLINE | ID: mdl-31311624
19.
Impact of iron reduction on the metabolism of Clostridium acetobutylicum.
Environ Microbiol
; 21(10): 3548-3563, 2019 10.
Artigo
Inglês
| MEDLINE | ID: mdl-31020759
20.
Kinetic models of metabolism that consider alternative steady-state solutions of intracellular fluxes and concentrations.
Metab Eng
; 52: 29-41, 2019 03.
Artigo
Inglês
| MEDLINE | ID: mdl-30455161