Detalhe da pesquisa
1.
Novel machine learning approaches revolutionize protein knowledge.
Trends Biochem Sci
; 48(4): 345-359, 2023 04.
Artigo
Inglês
| MEDLINE | ID: mdl-36504138
2.
CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models.
Bioinformatics
; 39(1)2023 01 01.
Artigo
Inglês
| MEDLINE | ID: mdl-36648327
3.
Prevalent bee venom genes evolved before the aculeate stinger and eusociality.
BMC Biol
; 21(1): 229, 2023 10 23.
Artigo
Inglês
| MEDLINE | ID: mdl-37867198
4.
Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins.
Brief Bioinform
; 22(3)2021 05 20.
Artigo
Inglês
| MEDLINE | ID: mdl-32672331
5.
PredictProtein - Predicting Protein Structure and Function for 29 Years.
Nucleic Acids Res
; 49(W1): W535-W540, 2021 07 02.
Artigo
Inglês
| MEDLINE | ID: mdl-33999203
6.
Embeddings from protein language models predict conservation and variant effects.
Hum Genet
; 141(10): 1629-1647, 2022 Oct.
Artigo
Inglês
| MEDLINE | ID: mdl-34967936
7.
Clustering FunFams using sequence embeddings improves EC purity.
Bioinformatics
; 37(20): 3449-3455, 2021 Oct 25.
Artigo
Inglês
| MEDLINE | ID: mdl-33978744
8.
Modeling aspects of the language of life through transfer-learning protein sequences.
BMC Bioinformatics
; 20(1): 723, 2019 Dec 17.
Artigo
Inglês
| MEDLINE | ID: mdl-31847804
9.
Dark Proteins Important for Cellular Function.
Proteomics
; 18(21-22): e1800227, 2018 11.
Artigo
Inglês
| MEDLINE | ID: mdl-30318701
10.
Artificial Intelligence Learns Protein Prediction.
Cold Spring Harb Perspect Biol
; 2024 Jun 10.
Artigo
Inglês
| MEDLINE | ID: mdl-38858069
11.
Protein embeddings predict binding residues in disordered regions.
Sci Rep
; 14(1): 13566, 2024 06 12.
Artigo
Inglês
| MEDLINE | ID: mdl-38866950
12.
From sequence to function through structure: Deep learning for protein design.
Comput Struct Biotechnol J
; 21: 238-250, 2023.
Artigo
Inglês
| MEDLINE | ID: mdl-36544476
13.
Domain loss enabled evolution of novel functions in the snake three-finger toxin gene superfamily.
Nat Commun
; 14(1): 4861, 2023 08 11.
Artigo
Inglês
| MEDLINE | ID: mdl-37567881
14.
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms.
Commun Biol
; 6(1): 160, 2023 02 08.
Artigo
Inglês
| MEDLINE | ID: mdl-36755055
15.
LambdaPP: Fast and accessible protein-specific phenotype predictions.
Protein Sci
; 32(1): e4524, 2023 01.
Artigo
Inglês
| MEDLINE | ID: mdl-36454227
16.
Protein language-model embeddings for fast, accurate, and alignment-free protein structure prediction.
Structure
; 30(8): 1169-1177.e4, 2022 08 04.
Artigo
Inglês
| MEDLINE | ID: mdl-35609601
17.
Nearest neighbor search on embeddings rapidly identifies distant protein relations.
Front Bioinform
; 2: 1033775, 2022.
Artigo
Inglês
| MEDLINE | ID: mdl-36466147
18.
SETH predicts nuances of residue disorder from protein embeddings.
Front Bioinform
; 2: 1019597, 2022.
Artigo
Inglês
| MEDLINE | ID: mdl-36304335
19.
Contrastive learning on protein embeddings enlightens midnight zone.
NAR Genom Bioinform
; 4(2): lqac043, 2022 Jun.
Artigo
Inglês
| MEDLINE | ID: mdl-35702380
20.
Improving protein succinylation sites prediction using embeddings from protein language model.
Sci Rep
; 12(1): 16933, 2022 10 08.
Artigo
Inglês
| MEDLINE | ID: mdl-36209286