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1.
Open Biol ; 12(12): 220297, 2022 12.
Artigo em Inglês | MEDLINE | ID: mdl-36514981

RESUMO

The purpose of this review is to outline our understanding of the nature, mechanism and physiological significance of light-induced reversible reorganizations in closed Type II reaction centre (RC) complexes. In the so-called 'closed' state, purple bacterial RC (bRC) and photosystem II (PSII) RC complexes are incapable of generating additional stable charge separation. Yet, upon continued excitation they display well-discernible changes in their photophysical and photochemical parameters. Substantial stabilization of their charge-separated states has been thoroughly documented-uncovering light-induced reorganizations in closed RCs and revealing their physiological importance in gradually optimizing the operation of the photosynthetic machinery during the dark-to-light transition. A range of subtle light-induced conformational changes has indeed been detected experimentally in different laboratories using different bRC and PSII-containing preparations. In general, the presently available data strongly suggest similar structural dynamics of closed bRC and PSII RC complexes, and similar physical mechanisms, in which dielectric relaxation processes and structural memory effects of proteins are proposed to play important roles.


Assuntos
Fotossíntese , Complexo de Proteína do Fotossistema II , Complexo de Proteína do Fotossistema II/metabolismo
2.
Biophys J ; 96(2): 621-31, 2009 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-19167309

RESUMO

The fluorescence kinetics of cyanobacterial photosystem II (PSII) core particles with closed reaction centers (RCs) were studied with picosecond resolution. The data are modeled in terms of electron transfer (ET) and associated protein conformational relaxation processes, resolving four different radical pair (RP) states. The target analyses reveal the importance of protein relaxation steps in the ET chain for the functioning of PSII. We also tested previously published data on cyanobacterial PSII with open RCs using models that involved protein relaxation steps as suggested by our data on closed RCs. The rationale for this reanalysis is that at least one short-lived component could not be described in the previous simpler models. This new analysis supports the involvement of a protein relaxation step for open RCs as well. In this model the rate of ET from reduced pheophytin to the primary quinone Q(A) is determined to be 4.1 ns(-1). The rate of initial charge separation is slowed down substantially from approximately 170 ns(-1) in PSII with open RCs to 56 ns(-1) upon reduction of Q(A). However, the free-energy drop of the first RP is not changed substantially between the two RC redox states. The currently assumed mechanistic model, assuming the same early RP intermediates in both states of RC, is inconsistent with the presented energetics of the RPs. Additionally, a comparison between PSII with closed RCs in isolated cores and in intact cells reveals slightly different relaxation kinetics, with a approximately 3.7 ns component present only in isolated cores.


Assuntos
Cianobactérias/química , Complexo de Proteína do Fotossistema II/química , Transporte de Elétrons , Fluorescência , Concentração de Íons de Hidrogênio , Cinética , Modelos Químicos , Feofitinas/química , Conformação Proteica , Quinonas/química , Espectrometria de Fluorescência
3.
Biochim Biophys Acta ; 1504(2-3): 311-8, 2001 Apr 02.
Artigo em Inglês | MEDLINE | ID: mdl-11245794

RESUMO

We studied the accumulation of long-lived charge-separated states in reaction centers isolated from Rhodobacter sphaeroides, using continuous illumination, or trains of single-turnover flashes. We found that under both conditions a long-lived state was produced with a quantum yield of about 1%. This long-lived species resembles the normal P(+)Q(-) state in all respects, but has a lifetime of several minutes. Under continuous illumination the long-lived state can be accumulated, leading to close to full conversion of the reaction centers into this state. The lifetime of this accumulated state varies from a few minutes up to more than 20 min, and depends on the illumination history. Surprisingly, the lifetime and quantum yield do not depend on the presence of the secondary quinone, Q(B). Under oxygen-free conditions the accumulation was reversible, no changes in the normal recombination times were observed due to the intense illumination. The long-lived state is responsible for most of the dark adaptation and hysteresis effects observed in room temperature experiments. A simple method for quinone extraction and reconstitution was developed.


Assuntos
Complexo de Proteínas do Centro de Reação Fotossintética/química , Rhodobacter sphaeroides/química , Campos Eletromagnéticos , Transporte de Elétrons , Luz , Complexo de Proteínas do Centro de Reação Fotossintética/isolamento & purificação , Conformação Proteica , Espectrofotometria , Fatores de Tempo
4.
Biochim Biophys Acta ; 1144(2): 161-9, 1993 Sep 13.
Artigo em Inglês | MEDLINE | ID: mdl-8369334

RESUMO

The excitation energy transfer and trapping processes in intact cells of Chloroflexus aurantiacus were studied by picosecond time-resolved fluorescence spectroscopy. The fluorescence decay kinetics is investigated over the near infrared emission range between 730 nm and 920 nm using various excitation wavelengths and excitation intensities. The data were analyzed by global decay analysis and are presented as decay-associated spectra (DAS). The specific dependence of the decay kinetics on the excitation wavelength and on the photochemical redox state of the reaction center (RC) allows the identification of the energy transfer and trapping components. The DAS provide evidence for two chlorosomal energy transfer processes. The first one occurs between the chlorosomal bacteriochlorophyll (BChl)-c and the BChl-a792 complex (B792) in the chlorosomal baseplate with an equilibration time constant of 15-16 ps, while the second one occurs from the B792 pigments to the BChl-a806 pigments in the B806-866 complex with a time constant of 35-40 ps. The overall energy trapping process in whole cells is mainly determined by the kinetics of the primary charge separation process in the RCs. With open RCs (QA oxidized) the trapping time constant is 70-90 ps, while the trapping process with closed RCs (QA reduced) takes as long as 180-200 ps. The results on whole cells reported here are interpreted in conjunction with those reported earlier for the various isolated complexes, i.e., two different chlorosome preparations (Holzwarth, A.R., Müller, M.G. and Griebenow, K. (1990) J. Photochem. Photobiol. B 5, 457-465), the B806-866 complex (Griebenow, K., Müller, M.G. and Holzwarth, A.R. (1991) Biochim. Biophys. Acta 1059, 226-232) and isolated reaction centers (Müller, M.G., Griebenow, K. and Holzwarth, A.R. (1991) Biochim. Biophys. Acta 1098, 1-12). Based on these data, a unified and self-consistent scheme for the primary processes in the whole photosynthetic system of C. aurantiacus is presented. The BChl antenna pigment groups are arranged to form a linear energy transfer cascade with four energy transfer steps from shorter-wavelength- to longer-wavelength-absorbing antenna pools. The overall fluorescence decay kinetics of the photosynthetic system of C. aurantiacus turns out to be 'trap-limited' by the reaction center rather than 'diffusion-limited' by the energy transfer processes.


Assuntos
Cianobactérias/química , Metabolismo Energético , Cinética , Complexos de Proteínas Captadores de Luz , Complexo de Proteínas do Centro de Reação Fotossintética/química
5.
Biochim Biophys Acta ; 1457(1-2): 71-80, 2000 Feb 24.
Artigo em Inglês | MEDLINE | ID: mdl-10692551

RESUMO

We have studied energy transfer in chlorosomes of Chlorobium limicola UdG6040 containing a mixture of about 50% bacteriochlorophyll (BChl) c and BChl d each. BChl d-depleted chlorosomes were obtained by acid treatment. The energy transfer between the different pigment pools was studied using both steady-state and time-resolved fluorescence spectroscopy at room temperature and low temperature. The steady-state emission of the intact chlorosome originated mainly from BChl c, as judged by comparison of fluorescence emission spectra of intact and BChl d-depleted chlorosomes. This indicated that efficient energy transfer from BChl d to BChl c takes place. At room temperature BChl c/d to BChl a excitation energy transfer (EET) was characterized by two components of 27 and 74 ps. At low temperature we could also observe EET from BChl d to BChl c with a time constant of approximately 4 ps. Kinetic modeling of the low temperature data indicated heterogeneous fluorescence kinetics and suggested the presence of an additional BChl c pool, E790, which is more or less decoupled from the baseplate BChl a. This E790 pool is either a low-lying exciton state of BChl c which acts as a trap at low temperature or alternatively represents the red edge of a broad inhomogeneous absorption band of BChl c. We present a refined model for the organization of the spatially separated pigment pools in chlorosomes of Cb. limicola UdG6040 in which BChl d is situated distal and BChl c proximal with respect to the baseplate.


Assuntos
Proteínas de Bactérias/química , Bacterioclorofilas , Chlorobi/genética , Chlorobi/química , Dicroísmo Circular , Transferência de Energia , Complexo de Proteínas do Centro de Reação Fotossintética/química
6.
FEBS Lett ; 460(3): 395-400, 1999 Nov 05.
Artigo em Inglês | MEDLINE | ID: mdl-10556505

RESUMO

The photosystem I complex organized in cyanobacterial membranes preferentially in trimeric form participates in electron transport and is also involved in dissipation of excess energy thus protecting the complex against photodamage. A small number of longwave chlorophylls in the core antenna of photosystem I are not located in the close vicinity of P700, but at the periphery, and increase the absorption cross-section substantially. The picosecond fluorescence kinetics of trimers resolved the fastest energy transfer components reflecting the equilibration processes in the core antenna at different redox states of P700. Excitation kinetics in the photosystem I bulk antenna is nearly trap-limited, whereas excitation trapping from longwave chlorophyll pools is diffusion-limited and occurs via the bulk antenna. Charge separation in the photosystem I reaction center is the fastest of all known reaction centers.


Assuntos
Cianobactérias/química , Cianobactérias/fisiologia , Complexo de Proteínas do Centro de Reação Fotossintética/química , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Cianobactérias/metabolismo , Complexos de Proteínas Captadores de Luz , Substâncias Macromoleculares , Complexo de Proteína do Fotossistema I , Relação Estrutura-Atividade
7.
FEBS Lett ; 339(1-2): 25-30, 1994 Feb 14.
Artigo em Inglês | MEDLINE | ID: mdl-8313975

RESUMO

A D1-D2-cyt b-559 complex containing 4 chlorophyll alpha, 1 beta-carotene and 1 cytochrome b-559 per 2 pheophytin a has been isolated from spinach with 30% yield using a Q-Sepharose Fast-Flow anion-exchange column equilibrated with 0.1% Triton X-100, 10 mM MgSO4 and 50 mM Tris-HCl (pH 7.2). The preparation was then stabilized with 0.1% dodecyl-beta-D-maltoside. This method gave a yield 10 times higher than that using a Fractogel TSK-DEAE 650(S) column equilibrated with 0.1% Triton X-100, 30 mM NaCl and 50 mM Tris-HCl (pH 7.2). The PS II RC complex was characterized using absorption and fluorescence spectroscopy at 277 and 77 K. A selective reversible bleaching under reducing conditions with maximum at 682 nm, associated with pheophytin a reduction, and light-induced absorption differences with a lifetime of 1.0 ms, ascribed to the triplet state of P680 were measured and indicated that the isolated D1-D2-cyt b-559 complex is active in charge separation. The results are compared with the data obtained for a PS II RC preparation containing 6 chlorophyll alpha, 2 beta-carotene and 1 cyt b-559 per 2 pheophytin a.


Assuntos
Clorofila/análise , Grupo dos Citocromos b/isolamento & purificação , Sulfato de Magnésio , Feofitinas/análise , Complexo de Proteínas do Centro de Reação Fotossintética/química , Complexo de Proteína do Fotossistema II , Plantas/química , Clorofila/química , Clorofila A , Grupo dos Citocromos b/química , Glucosídeos/farmacologia , Concentração de Íons de Hidrogênio , Complexos de Proteínas Captadores de Luz , Substâncias Macromoleculares , Peso Molecular , Octoxinol/farmacologia , Feofitinas/química , Fotoquímica , Espectrometria de Fluorescência , Espectrofotometria
8.
Photosynth Res ; 64(2-3): 221-31, 2000.
Artigo em Inglês | MEDLINE | ID: mdl-16228460

RESUMO

The absorption spectra of two light harvesting complexes from higher plants, CP29 and LHC II, have been analysed in the Soret region in order to obtain a description in terms of the absorption spectra of the individual pigments. This information is of great practical use when applying spectroscopic techniques to the study of energy transfer in photosynthesis such as time-resolved spectroscopy thus allowing determination of the relative absorption cross-section for the different chromophores in the system as a function of wavelength. In this study, recombinant Lhc proteins carrying point mutations in pigment-binding residues have been used in order to obtain the spectral shape of individual chromophores by differential spectroscopy with respect to the WT protein. Combinations of spectra thus obtained were then used to fit the absorption spectra of WT and mutant pigment-proteins according to the constraints posed by stoichiometry of pigments as derived by biochemical analysis. This procedure allowed identification of each pigment in term of its wavelength position, spectral shape and extinction coefficient. The data obtained by this procedure have been successfully applied to the description of other higher plant Lhc proteins thus supporting the view that the Lhc superfamily members share specific pigment-protein interactions as suggested by sequence homology.

9.
Photochem Photobiol ; 75(6): 619-26, 2002 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-12081324

RESUMO

The chlorosomal light-harvesting antennae of green phototrophic bacteria consist of large supramolecular aggregates of bacteriochlorophyll c (BChl c). The supramolecular structure of (3(1)-R/S)-BChl c on highly oriented pyrolytic graphite (HOPG) and molybdenum disulfide (MoS2) has been investigated by scanning tunneling microscopy (STM). On MoS2, we observed single BChl c molecules, dimers or tetramers, depending on the polarity of the solvent. On HOPG, we observed extensive self-assembly of the dimers and tetramers. We propose C=O...H-O...Mg bonding networks for the observed dimer chains, in agreement with former ultraviolet-visible and infrared spectroscopic work. The BChl c moieties in the tetramers are probably linked by four C=O...H-O hydrogen bonds to form a circle and further stabilized by Mg...O-H bondings to underlying BChl c layers. The tetramers form highly ordered, distinct chains and extended two-dimensional networks. We investigated semisynthetic chlorins for comparison by STM but observed that only BChl c self-assembles to well-structured large aggregates on HOPG. The results on the synthetic chlorins support our structure proposition.


Assuntos
Proteínas de Bactérias/química , Bacterioclorofilas/química , Dissulfetos/química , Grafite , Temperatura Alta , Microscopia de Tunelamento/métodos , Modelos Moleculares , Conformação Molecular , Molibdênio/química
11.
Biochemistry ; 45(7): 2436-42, 2006 Feb 21.
Artigo em Inglês | MEDLINE | ID: mdl-16475833

RESUMO

The fluorescence kinetics in intact photosystem II core particles from the cyanobacterium Thermosynechococcus elongatus have been measured with picosecond resolution at room temperature in open reaction centers. At least two new lifetime components of approximately 2 and 9 ps have been resolved in the kinetics by global analysis in addition to several known longer-lived components (from 42 ps to approximately 2 ns). Kinetic compartment modeling yields a kinetic description in full agreement with the one found recently by femtosecond transient absorption spectroscopy [Holzwarth et al. (2005) submitted to Proc. Natl. Acad. Sci. U.S.A.]. We have for the first time resolved directly the fluorescence spectrum and the kinetics of the equilibrated excited reaction center in intact photosystem II and have found two early radical pairs before the electron is transferred to the quinone Q(A). The apparent lifetime for primary charge separation is 7 ps, that is, by a factor of 8-12 faster than assumed on the basis of earlier analyses. The main component of excited-state decay is 42 ps. The effective primary charge separation rate constant is 170 ns(-)(1), and the secondary electron-transfer rate constant is 112 ns(-)(1). Both electron-transfer steps are reversible. Electron transfer from pheophytin to Q(A) occurs with an apparent overall lifetime of 350 ps. The energy equilibration between the CP43/CP47 antenna and the reaction center occurs with a main apparent lifetime of approximately 1.5 ps and a minor 10 ps lifetime component. Analysis of the overall trapping kinetics based on the theory of energy migration and trapping on lattices shows that the charge separation kinetics in photosystem II is extremely trap-limited and not diffusion-to-the-trap-limited as claimed in several recent papers. These findings support the validity of the assumptions made in deriving the earlier exciton radical pair equilibrium model [Schatz, G. H., Brock, H., and Holzwarth, A. R. (1988) Biophys. J. 54, 397-405].


Assuntos
Complexo de Proteína do Fotossistema II/metabolismo , Cianobactérias/química , Transporte de Elétrons , Cinética , Modelos Biológicos , Espectrometria de Fluorescência
12.
Proc Natl Acad Sci U S A ; 103(18): 6895-900, 2006 May 02.
Artigo em Inglês | MEDLINE | ID: mdl-16641109

RESUMO

The mechanism and kinetics of electron transfer in isolated D1/D2-cyt(b559) photosystem (PS) II reaction centers (RCs) and in intact PSII cores have been studied by femtosecond transient absorption and kinetic compartment modeling. For intact PSII, a component of approximately 1.5 ps reflects the dominant energy-trapping kinetics from the antenna by the RC. A 5.5-ps component reflects the apparent lifetime of primary charge separation, which is faster by a factor of 8-12 than assumed so far. The 35-ps component represents the apparent lifetime of formation of a secondary radical pair, and the approximately 200-ps component represents the electron transfer to the Q(A) acceptor. In isolated RCs, the apparent lifetimes of primary and secondary charge separation are approximately 3 and 11 ps, respectively. It is shown (i) that pheophytin is reduced in the first step, and (ii) that the rate constants of electron transfer in the RC are identical for PSII cores and for isolated RCs. We interpret the first electron transfer step as electron donation from the primary electron donor Chl(acc D1). Thus, this mechanism, suggested earlier for isolated RCs at cryogenic temperatures, is also operative in intact PSII cores and in isolated RCs at ambient temperature. The effective rate constant of primary electron transfer from the equilibrated RC* excited state is 170-180 ns(-1), and the rate constant of secondary electron transfer is 120-130 ns(-1).


Assuntos
Transporte de Elétrons/fisiologia , Elétrons , Feofitinas/química , Complexo de Proteína do Fotossistema II/fisiologia , Complexo de Proteína do Fotossistema II/isolamento & purificação , Synechococcus/metabolismo , Fatores de Tempo
13.
Biophys J ; 57(6): 1141-53, 1990 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19431758

RESUMO

The concept of a relaxed radical pair state in closed photosystem (PS) II centers (first quinone acceptor reduced) is critically examined on the basis of chlorophyll fluorescence decay data of the green alga Scenedesmus obliquus. Global analysis resulting in the decay-associated fluorescence spectra from closed PS II centers reveals a new PS II lifetime component (tau approximately 380 ps) in addition to two PS II components (tau approximately 1.3 and 2.1 ns) resolved earlier. Particular emphasis was given to resolve a potential long-lived ( approximately 10 ns) component of small amplitude; however, the longest lifetime found is only 2.1 ns. From comparison of experimental and simulated data we conclude that the maximum relative amplitude of such a potential long-lived component must be <0.1%. The PS II kinetics are analyzed in terms of a three-state model involving an antenna/reaction center excited state, a primary radical pair state, and a relaxed radical pair state. The rate constants for charge separation and presumed radical pair relaxation as well as those for the reverse processes are calculated. Critical examination of these results leads us to exclude the formation with high yield (> 15%) of a long-lived (tau >/= 3 ns) relaxed radical pair in closed PS II. If at all distinguishable kinetically and energetically from the primary radical pair, a relaxed radical pair would not live longer than 2-3 ns in green algae. The data suggest, however, that the concept of a long-lived relaxed radical pair state is inappropriate for intact PS II.

14.
Biochemistry ; 35(3): 829-42, 1996 Jan 23.
Artigo em Inglês | MEDLINE | ID: mdl-8547263

RESUMO

In this study a model for decomposition and pigment assignment of the low-temperature (10 K) absorption spectrum of the photosystem II reaction center (D1-D2-cytochrome b559 complex, PSII-RC) is developed. It is based on theoretical calculations of the line shapes of the inhomogeneously broadened pigment spectra, taking into account electron-phonon coupling. The analysis is performed under the hypothesis that exciton coupling is weak, except for the P680 special pair. In this way a detailed decomposition of the absorption spectrum is obtained. Within the model the temperature dependence of the spectrum can be well explained. It is mainly caused by the temperature-dependent changes of the homogeneous absorption spectra of the individual pigments in the PSII-RC. In addition, slight changes in the inhomogeneous distribution functions have to be taken into account. Two slightly different parameter sets are found. We prefer one of these parameter sets which indicates that an accessory chlorophyll (Chl) is the lowest energy pigment in the RC core and that the two antenna Chls have their spectral maxima at 667.7 and 677.9 nm, respectively. The relationship between the shape of the absorption spectrum and the pigment stoichiometry of the sample (ratio of chlorophyll a:pheophytin a), which was noticed by comparison of a variety of different independently prepared samples, can be explained by the presence of "additional" Chl molecules which are nonstoichiometrically bound to part of the PSII-RCs. These Chls can be grouped into three spectrally distinguishable pools. One of them has its absorption maximum at about 683 nm and is responsible for the prominent shoulder that is present in the 10 K absorption spectra of most PSII-RC preparations. Our results suggest that the Chl content of the samples has been underestimated in many spectroscopic studies on the PSII-RC.


Assuntos
Clorofila/análise , Feofitinas/análise , Complexo de Proteínas do Centro de Reação Fotossintética/química , Complexos de Proteínas Captadores de Luz , Complexo de Proteínas do Centro de Reação Fotossintética/análise , Complexo de Proteína do Fotossistema II , Espectrofotometria , Temperatura
15.
Biophys J ; 66(2 Pt 1): 415-29, 1994 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-8161695

RESUMO

Kinetic modeling of the exciton migration in the cyanobacterial photosystem I core complex from Synechococcus sp. was performed by an exact solution of the Pauli master equation for exciton motion. A square two-dimensional 10 x 10 pigment lattice and a Förster dipole-dipole coupling between chromophores was assumed. We calculated decay-associated spectra and lifetimes and compared them to the corresponding experimental data from picosecond fluorescence and transient absorption obtained by global analysis. Seven spectral chlorophyll(Chl) forms, identical in shape but shifted in their absorption maximums, were used to describe the non-homogeneous broadening of the PS I-100 particle absorption spectrum. The optimized Chl lattice arrangement best reproducing the experimental decay-associated spectra as well as the steady-state fluorescence spectrum indicated the long-wavelength-absorbing Chls forming a cluster in the corner of the lattice with the reaction center (RC) placed apart at a distance of two lattice constants. The variable parameters, i.e., the charge separation rate in the RC and the lattice constant a, were found to be optimal at kRC = 2.3 ps-1 and a = 1.14 nm, respectively. The surprising conclusions of the simulations is that Chls with absorption maxima as long a 724 nm have to be taken into account to describe the time-resolved spectra of this PS I particle properly. The dependencies of the exciton decay in the model PS I particle on the excitation wavelength and on the temperature are discussed. We also show that the excited state decay of similar PS I particles that lack the long-wavelength absorbing Chls is nearly mono-exponential. Various critical factors that limit the general reliability of the conclusions of such simulations are discussed in detail.


Assuntos
Complexo de Proteínas do Centro de Reação Fotossintética/química , Fenômenos Biofísicos , Biofísica , Simulação por Computador , Cianobactérias/química , Cianobactérias/efeitos da radiação , Transferência de Energia , Cinética , Modelos Químicos , Fotoquímica , Complexo de Proteínas do Centro de Reação Fotossintética/efeitos da radiação , Espectrometria de Fluorescência , Termodinâmica
16.
Photosynth Res ; 41(1): 225-33, 1994 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-24310029

RESUMO

The supramolecular structure of methyl (3(1) R)-BChlided aggregation has been explored by molecular modelling in order to elucidate the unusual structure of the BChl rods in the chlorosomal antennae of green bacteria. The aggregate construction progressed from a BChlide monomer in 5c coordination which was stepwise combined to form trimeric, pentameric and decameric chlorin stacks, all incorporating Mg····O-H as a basic interaction element which links two chlorins between the 3(1)-hydroxyl oxygen and the Mg. Up to the level of the trimer, the structures were optimized by both a semiempirical quantum chemical method (PM3) and a force field method, while larger structures were only modelled by the force field (MM+). Strong interactions were found by extended stacking of chlorins which are in van der Waals contact. Extended hydrogen bonding networks upon stack pairing brought about by OH····O=C bonds (bond length ca. 2.2Å, angle 139-153°) between appropriately situated chlorin pairs and by electrostatic interactions lead to very large energy stabilizations. The structural features of a modelled 40mer BChl aggregate are in full accord with all spectroscopic and low-resolution structural information on the in-vitro and chlorosomal BChl aggregates. Most important, from the rotation angle between stacks of ca. 16° and the stack-to-stack distance of 7.6 Å a tubular structure can be extrapolated to form on further extension of the aggregate. It has a predicted diameter of about 5.4 nm (Mg-Mg distance), i.e. very similar to that found for the rod elements in the chlorosomes ofChloroflexus.

17.
Biophys J ; 71(1): 351-64, 1996 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-8804618

RESUMO

A procedure is described to generate and optimize the lattice models for spectrally inhomogeneous photosynthetic antenna/reaction center (RC) particles. It is based on the genetic algorithm search for the pigment spectral type distributions on the lattice by making use of steady-state and time-resolved spectroscopic input data. Upon a proper fitness definition, a family of excitation energy transfer models can be tested for their compatibility with the availability experimental data. For the case of the photosystem I core antenna (99 chlorophyll + primary electron donor pigment (P700)), three spectrally inhomogeneous three-dimensional lattice models, differing in their excitation transfer conditions, were tested. The relevant fit parameters were the pigment distribution on the lattice, the average lattice spacing of the main pool pigments, the distance of P700 and of long wavelength-absorbing (LWA) pigments to their nearest-neighbor main pool pigments, and the rate constant of charge separation from P700. For cyanobacterial PS I antenna/RC particles containing a substantial amount of LWA pigments, it is shown that the currently available experimental fluorescence data are consistent both with more migration-limited, and with more trap-limited excitation energy transfer models. A final decision between these different models requires more detailed experimental data. From all search runs about 30 different relative arrangements of P700 and LWA pigments were found. Several general features of all these different models can be noticed: 1) The reddest LWA pigment never appears next to P700. 2) The LWA pigments in most cases are spread on the surface of the lattice not far away from P700, with a pronounced tendency toward clustering of the LWA pigments. 3) The rate constant kP700 of charge separation is substantially higher than 1.2 ps-1, i.e., it exceeds the corresponding rate constant of purple bacterial RCs by at least a factor of four. 4) The excitation transfer within the main antenna pool is very rapid (less than 1 ps equilibration time), and only the equilibration with the LWA pigments is slow (about 10-12 ps). The conclusions from this extended study on three-dimensional lattices are in general agreement with the tendencies and limitations reported previously for a simpler two-dimensional array. Once more detailed experimental data are available, the procedure can be used to determine the relevant rate-limiting processes in the excitation transfer in such spectrally inhomogeneous antenna systems.


Assuntos
Modelos Biológicos , Fotossíntese/fisiologia , Complexo de Proteínas do Centro de Reação Fotossintética/química , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Algoritmos , Fenômenos Biofísicos , Biofísica , Clorofila/química , Clorofila/metabolismo , Eletroquímica , Transferência de Energia , Complexos de Proteínas Captadores de Luz , Estrutura Molecular , Complexo de Proteína do Fotossistema I , Termodinâmica
18.
Biochemistry ; 35(36): 11820-31, 1996 Sep 10.
Artigo em Inglês | MEDLINE | ID: mdl-8794764

RESUMO

Femtosecond transient absorption spectra on reaction centers from Rhodobacter sphaeroides wild type have been recorded with high time and wavelength resolution and a very high S/N ratio in the 500-940 nm range with a diode array system. The data have been analyzed by global analysis. Five lifetime components of 1.5, 3.1, 10.8, and 148 ps and long-lived (several nanoseconds) were required to fit the entire three-dimensional data surface adequately with a single set of lifetimes and decay-associated difference spectra (DADS). Up to 30 ps, there is little dispersion in the lifetimes, but in the longer time range (50-250 ps), a substantial variation in lifetime was observed, depending on detection wavelength. The data from the global analysis have been subjected to kinetic modeling comparing sequential kinetic schemes either including (reversible model) or excluding (forward model) back-reactions in the early electron transfer process(es). Thus, the molecular rate constants for the model(s) and the difference spectra of the pure intermediates [species-associated difference spectra (SADS)] were obtained. The data unequivocally confirm the necessity of an electron transfer intermediate with spectral characteristics of P+B-H prior to the formation of the P+BH- state (P is special pair, B is accessory chlorophyll, and H is pheophytin), irrespective of the model chosen. Besides being in much better agreement with the observation of long-lived fluorescence kinetics components, the reversible model results in SADS, in particular for the P+BH- state, that are in somewhat better agreement with expectations than for the pure forward model. For these and other reasons, the reversible model is preferred over the pure forward model. The electrochromic shifts of the H bands in the P+B- state and of the B bands in the P+H- state are revealed clearly in the spectra, thus supporting the assignments. Within the reversible model, the rate constant for the forward reaction in the first step P*-->P+B-H is slightly larger [k12 approximately (2.48 ps)-1] than for the second step P+B-H-->P+BH- [k23 approximately equal to (2.53 ps)-1], in contrast to the pure forward model. From the rate constants for the respective back-reactions, the free energy differences delta G relative to P* for the states P+B-H and P+BH- have been determined to be -41 and -91 meV, respectively. Thus, the free energy difference for the P+BH- state at early times after electron transfer is by a factor of 2-3 smaller than assumed so far. This has the important consequence that a quasi-equilibrium exists from about 10 ps until further electron transfer on the 200 ps time scale with a substantial percentage (approximately 16%) of the P+B-H state present. These results present the first direct evidence from transient absorption data, where the nature of the intermediate can be assigned, for the validity of the slow radical pair relaxation concept. The results have various consequences for understanding the mechanism of the overall electron transfer reaction and imply a much more active role of the protein in the early charge separation processes of the reaction center than assumed so far. The data are discussed in terms of current electron transfer theory. It is suggested that the two first-electron steps operate at a rate very close to the maximal possible rate.


Assuntos
Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Rhodobacter sphaeroides/metabolismo , Transporte de Elétrons , Cinética , Luz , Espectrofotometria , Termodinâmica
19.
Biophys J ; 52(5): 673-83, 1987 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-19431707

RESUMO

A kinetic model for the energy transfer in phycobilisome (PBS) rods of Synechococcus 6301 is presented, based on a set of experimental parameters from picosecond studies. It is shown that the enormous complexity of the kinetic system formed by 400-500 chromophores can be greatly simplified by using symmetry arguments. According to the model the transfer along the phycocyanin rods has to be taken into account in both directions, i.e., back and forth along the rods. The corresponding forward rate constants for single step energy transfer between trimeric disks are predicted to be 100-300 ns(-1). The model that best fits the experimental data is an asymmetric random walk along the rods with overall exciton kinetics that is essentially trap-limited. The transfer process from the sensitizing to the fluorescing C-PC phycocyanin chromophores (tau approximately 10 ps) is localized in the hexamers. The transfer from the innermost phycocyanin trimer to the core is calculated to be in the range 36-44 ns(-1). These parameters lead to calculated overall rod-core transfer times of 102 and 124 ps for rods containing three and four hexamers, respectively. The model calculations confirm the previously suggested hypothesis that the energy transfer from the rods to the core is essentially described by one dominant exponential function. Extension of the model to heterogeneous PBS rods, i.e., PBS containing also phycoerythrin, is straightforward.

20.
Biophys J ; 52(5): 717-28, 1987 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-19431709

RESUMO

Decay-associated fluorescence spectra of the green alga Scenedesmus obliquus have been measured by single-photon timing with picosecond resolution in various states of light adaptation. The data have been analyzed by applying a global data analysis procedure. The amplitudes of the decay-associated spectra allow a determination of the relative antenna sizes of the photosystems. We arrive at the following conclusions: (a) The fluorescence kinetics of algal cells with open PS II centers (F(0) level) have to be described by a sum of three exponential components. These decay components are attributed to photosystem (PS) I (tau approximately 85 ps, lambda(max) (em) approximately 695-700 nm), open PS II alpha-centers (tau approximately 300 ps, lambda(max) (em) = 685 nm), and open PS II beta-centers (tau approximately 600 ps, lambda(max) (em) = 685 nm). A fourth component of very low amplitude (tau approximately 2.2-2.3 ns, lambda(max) (em) = 685 nm) derives from dead chlorophyll. (b) At the F(max) level of fluorescence there are also three decay components. They originate from PS I with properties identical to those at the F(0) level, from closed PS II alpha-centers (tau approximately 2.2 ns, lambda(max) (em) = 685 nm) and from closed PS beta-centers (tau approximately 1.2 ns, lambda(max) (em) = 685 nm). (c) The major effect of light-induced state transitions on the fluorescence kinetics involves a change in the relative antenna size of alpha- and beta-units brought about by the reversible migration of light-harvesting complexes between alpha-centers and beta-centers. (d) A transition to state II does not measurably increase the direct absorption cross-section (antenna size) of PS I. Our data can be rationalized in terms of a model of the antenna organization that relates the effects of state transitions and light-harvesting complex phosphorylation with the concepts of PS II alpha,beta-heterogeneity. We discuss why our results are in disagreement with those of a recent lifetime study of Chlorella by M. Hodges and I. Moya (1986, Biochim. Biophys. Acta., 849:193-202).

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