Detalhe da pesquisa
1.
A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain.
Cell
; 174(4): 982-998.e20, 2018 08 09.
Artigo
Inglês
| MEDLINE | ID: mdl-29909982
2.
Cell-type-directed design of synthetic enhancers.
Nature
; 626(7997): 212-220, 2024 Feb.
Artigo
Inglês
| MEDLINE | ID: mdl-38086419
3.
Decoding gene regulation in the fly brain.
Nature
; 601(7894): 630-636, 2022 01.
Artigo
Inglês
| MEDLINE | ID: mdl-34987221
4.
SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks.
Nat Methods
; 20(9): 1355-1367, 2023 09.
Artigo
Inglês
| MEDLINE | ID: mdl-37443338
5.
Interpretation of allele-specific chromatin accessibility using cell state-aware deep learning.
Genome Res
; 31(6): 1082-1096, 2021 06.
Artigo
Inglês
| MEDLINE | ID: mdl-33832990
6.
Cross-species analysis of enhancer logic using deep learning.
Genome Res
; 30(12): 1815-1834, 2020 12.
Artigo
Inglês
| MEDLINE | ID: mdl-32732264
7.
cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data.
Nat Methods
; 16(5): 397-400, 2019 05.
Artigo
Inglês
| MEDLINE | ID: mdl-30962623
8.
Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics.
Mol Syst Biol
; 16(5): e9438, 2020 05.
Artigo
Inglês
| MEDLINE | ID: mdl-32431014
9.
SCENIC: single-cell regulatory network inference and clustering.
Nat Methods
; 14(11): 1083-1086, 2017 Nov.
Artigo
Inglês
| MEDLINE | ID: mdl-28991892
10.
Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic.
Genome Res
; 26(7): 882-95, 2016 07.
Artigo
Inglês
| MEDLINE | ID: mdl-27197205
11.
i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly.
Nucleic Acids Res
; 43(W1): W57-64, 2015 Jul 01.
Artigo
Inglês
| MEDLINE | ID: mdl-25925574
12.
Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein-Uhlenbeck Models.
Mol Biol Evol
; 32(9): 2441-55, 2015 Sep.
Artigo
Inglês
| MEDLINE | ID: mdl-25944915
13.
JAK3 mutants transform hematopoietic cells through JAK1 activation, causing T-cell acute lymphoblastic leukemia in a mouse model.
Blood
; 124(20): 3092-100, 2014 Nov 13.
Artigo
Inglês
| MEDLINE | ID: mdl-25193870
14.
Comprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemia.
PLoS Genet
; 9(12): e1003997, 2013.
Artigo
Inglês
| MEDLINE | ID: mdl-24367274
15.
iRegulon: from a gene list to a gene regulatory network using large motif and track collections.
PLoS Comput Biol
; 10(7): e1003731, 2014 Jul.
Artigo
Inglês
| MEDLINE | ID: mdl-25058159
16.
Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation.
Nat Cell Biol
; 26(1): 153-167, 2024 Jan.
Artigo
Inglês
| MEDLINE | ID: mdl-38182825
17.
Shared enhancer gene regulatory networks between wound and oncogenic programs.
Elife
; 122023 05 03.
Artigo
Inglês
| MEDLINE | ID: mdl-37133250
18.
Systematic benchmarking of single-cell ATAC-sequencing protocols.
Nat Biotechnol
; 2023 Aug 03.
Artigo
Inglês
| MEDLINE | ID: mdl-37537502
19.
Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads.
Elife
; 112022 02 23.
Artigo
Inglês
| MEDLINE | ID: mdl-35195064
20.
Comparative analysis of antibody- and lipid-based multiplexing methods for single-cell RNA-seq.
Genome Biol
; 23(1): 55, 2022 02 16.
Artigo
Inglês
| MEDLINE | ID: mdl-35172874