Critical roles of the CuB site in efficient proton pumping as revealed by crystal structures of mammalian cytochrome c oxidase catalytic intermediates.

Mammalian cytochrome c oxidase (CcO) reduces O2 to water in a bimetallic site including Fea3 and CuB giving intermediate molecules, termed A-, P-, F-, O-, E-, and R-forms. From the P-form on, each reaction step is driven by single-electron donations from cytochrome c coupled with the pumping of a single proton through the H-pathway, a proton-conducting pathway composed of a hydrogen-bond network and a water channel. The proton-gradient formed is utilized for ATP production by F-ATPase. For elucidation of the proton pumping mechanism, crystal structural determination of these intermediate forms is necessary. Here we report X-ray crystallographic analysis at ∼1.8 Å resolution of fully reduced CcO crystals treated with O2 for three different time periods. Our disentanglement of intermediate forms from crystals that were composed of multiple forms determined that these three crystallographic data sets contained ∼45% of the O-form structure, ∼45% of the E-form structure, and ∼20% of an oxymyoglobin-type structure consistent with the A-form, respectively. The O- and E-forms exhibit an unusually long CuB2+-OH- distance and CuB1+-H2O structure keeping Fea33+-OH- state, respectively, suggesting that the O- and E-forms have high electron affinities that cause the O→E and E→R transitions to be essentially irreversible and thus enable tightly coupled proton pumping. The water channel of the H-pathway is closed in the O- and E-forms and partially open in the R-form. These structures, together with those of the recently reported P- and F-forms, indicate that closure of the H-pathway water channel avoids back-leaking of protons for facilitating the effective proton pumping.

Absolute configuration determination of the anti-head-to-head photocyclodimer of anthracene-2-carboxylic acid through cocrystallization with L-prolinol.

The absolute configuration has been established of the enantiopure anti-head-to-head cyclodimer of anthracene-2-carboxylic acid (AC) cocrystallized with L-propinol and dichloromethane [systematic name: (S)-2-(hydroxymethyl)pyrrolidin-1-ium (5R,6S,11R,12S)-8-carboxy-5,6,11,12-tetrahydro-5,12:6,11-bis([1,2]benzeno)dibenzo[a,e][8]annulene-2-carboxylate dichloromethane monosolvate], C5H12NO(+)·C30H19O4(-)·CH2Cl2. In the crystal structure, the AC dimer interacts with L-prolinol through a nine-membered hydrogen-bonded ring [R2(2)(9)], while the dichloromethane molecule is incorporated to fill the void space. The absolute configuration determined in this study verifies a recent assignment made by comparing theoretical versus experimental circular dichroism spectra.

A structural isomer of nonaromatic porphyrin: preparation of 20pi-conjugated porphycene based on electronic perturbation.

A porphycene having four CF3 groups at the beta-pyrrolic positions affords a stable 20pi-conjugated form in the presence of a 2H+-2e- donor due to the high redox potential of the tetrapyrrole ring framework. No visible band in the UV-vis spectrum and the highly ruffled structure determined by X-ray crystallography support its nonaromatic character. The ethylene bridge moiety in the 20pi-conjugated framework displayed the olefinic reactivities.

Cascade Rearrangement of 5-Cyclopentylidenecyclooctanones.

Acid-catalyzed rearrangement of 5-cyclopentylidenecyclooctanone derivatives 9a-c was examined to obtain polyspiropolyquinanes 11a-c, considered to have a unique helical structure, through cascade rearrangement pathways consisting of continuous transannular cyclization followed by successive 1,2-alkyl shifts. The substrates were prepared easily by use of the Wittig or McMurry reaction. Reaction of the 5-cyclopentylidenecyclooctanone (9a) with acid gave the expected dispirotriquinane ketone 11a in high yield. The precise mechanism was elucidated by a deuterium-labeling experiment. In the case of the ketone 9b, having another spiroannulated cyclopentane ring attached on 9a, the trispirotetraquiane 11b was not obtained but the bis-propellane-type tetrahydrofuran 25 was produced exclusively. The 5-(5'-cyclopentylidenecyclooctylidene)cyclooctanone (9c) afforded the polycyclic compounds 27-31, depending on the acid used, instead of the desired tetraspiropentaquinane 11c. The structures of the products were determined by NMR spectral data including 2D (13)C INADEQUATE spectra and X-ray crystallographic analyses. The unexpected rearrangement pathways are also discussed.

Electrochemical and phosphorescent properties of new Ir(III) complexes coordinated by various bipyridine derivatives.

Four useful polypyridine iridium(III) complexes in the form of [IrCl2L2]+ were prepared and their spectroscopic and electrochemical properties as well as X-ray crystallography were investigated. The ligands used were L = 2,2'-bipyridine, 4,4'-dimethyl-2,2'-bipyridine, 4,4'-diphenyl-2,2'-bipyridine, 1,10-phenanthroline, 4,7-diphenyl-1,10-phenanthroline, and 2,2'-biquinoline. Synthetic methods were developed by a sequential ligand-replacement, which occurred in the reaction vessel using a microwave oven. All complexes showed that LUMOs are based on the pi-system contribution of the polypyridine ligand for [IrCl2(bpy)2]+, [IrCl2(dmbpy)2]+, [IrCl2(dpbpy)2]+, [IrCl2(phen)2]+, [IrCl2(dpphen)2]+ and [IrCl2(bqn)2]+. The HOMOs are also localized on the polypyridine ligand in the iridium complexes. It was found that [IrCl2L2]+ emits intense phosphorescence at room temperature. In particular, the use of dpbpy as ancillary ligands extends the lifetime (660 ns) of the 3(pi-pi*) excited states of Ir(III) polypyridine complexes. The complex [IrCl2(bqn)2]+ with electron acceptor substituents shows a large red-shift to 622 nm. It is noticed that iridium polypyridine complexes show intense emissions at various colors, such as yellow for [IrCl2(dmbpy)2]+ and red for [IrCl2(bqn)2]+ which can be applied to photosensitizers. The spectroscopic and electrochemical details are also reported herein.

Electrochemical and luminescent properties of new mononuclear ruthenium(II) and binuclear iridium(III)-ruthenium(II) terpyridine complexes.

Hexafluorophosphate salts of mononuclear complexes [Ru(II)Cl(L)(terpy)]+ (L = dmbpy (1); dpbpy (2), sambpy (3), and dpp (7), and binuclear complexes [Ru(II)2Cl2(dpp)(terpy)2]2+ (8) and [Ir(III)Ru(II)Cl2(dpp)(terpy)2]3+ (9) were prepared and characterized. Abbreviations of the ligands are bpy = 2,2'-bipyridine, dmbpy = 4,4'-dimethyl-2,2'-bipyridine, dpbpy = 4,4'-diphenyl-2,2'-bipyridine, dpp = 2,3-bis(2-pyridyl)pyrazine, sambpy = 4,4'-bis((S)-(+)-alpha-1-phenylethylamido)-2,2'-bipyridine, and terpy = 2,2':6',2''-terpyridine. The absorption spectra of 8 and 9 are dominated by ligand-centered bands in the UV region and by metal-to-ligand charge-transfer bands in the visible region. The details of their spectroscopic and electrochemical properties were investigated. In both binuclear complexes, it has been found that the HOMO is based on the Ru metal, and LUMO is dpp-based. [Ir(III)Ru(II)Cl2(dpp)(terpy)2]3+, indicating intense emission at room temperature, and a lifetime of 154 ns. The long lifetime of this bimetallic chromophore makes it a useful component in the design of supramolecular complexes.

Enhanced lasing properties of dissymmetric Eu(III) complex with bidentate phosphine ligands.

The luminescent and lasing properties of Eu(III) complexes were enhanced by using an dissymmetric Eu(III) complex. The photophysical properties (the emission spectral shapes, the emission lifetimes, the emission quantum yields, and the stimulated emission cross section (SEC)) were found to be dependent on the geometrical structures of Eu(III) complexes. The geometrical structures of Eu(III) complexes were determined by X-ray single crystal analyses. The symmetrical group of Eu(hfa)3(BIPHEPO) (tris(hexafluoroacetylacetonato)europium(III) 1,1'-biphenyl-2,2'-diylbis(diphenylphosphine oxide)) was found to be C1, which was more dissymmetric than Eu(hfa)3(TPPO)2 (tris(hexafluoroacetylacetonato)europium(III) 1,2-phenylenebis(diphenylphosphine oxide): C2 symmetry) and Eu(hfa)3(OPPO)2 (tris(hexafluoroacetylacetonato)europium(III) 1,2-phenylenebis(diphenylphosphine oxide): C2 symmetry). The analytical data were supported by Judd-Ofelt analysis. The most dissymmetrical Eu(III) complex, Eu(hfa)3(BIPHEPO), showed large electron transition probability and large SEC (4.64 x 10(-20) cm2). The SEC of Eu(hfa)3(BIPHEPO) was superior to even the values of Nd-glass laser for practical use (1.6-4.5 x 10(-20) cm2). The lasing properties of Eu(III) complexes in polymer thin film were measured by photopumping of a Nd:YAG laser (355 nm). The threshold energy of lasing oscillation was found to be 0.05 mJ. The increasing rate of the lasing intensity of Eu(hfa)3(BIPHEPO) as a function of the excitation energy was much larger than that of Eu(hfa)3(TPPO)2 and Eu(hfa)3(OPPO)2. The dissymmetrical structure of Eu(hfa)3(BIPHEPO) promoted the enhancement of the lasing property.

A quadrupole-quadrupole stacking synthon in (2,3,5,6-tetrafluorobenzenethiolato-kappaS)(triphenylphosphine-kappaP)gold(I).

The title compound, [Au(C6HF4S)(C18H15P)], with both aromatic and fluorinated aromatic rings in its molecular system, shows dimerization through a quadrupole-quadrupole stacking synthon. The dimer further aggregates through intermolecular pi-pi stacking and C-H...pi interactions, giving a supramolecular three-dimensional network.

Tetra-n-butylammonium tetrakis(pentafluorobenzenethiolato-kappaS)aurate(III).

The title compound, (C(16)H(36)N)[Au(C(6)F(5)S)(4)], is the first example of a structurally characterized gold(III) complex with monodentate benzenethiolate ligands. The Au atom lies on a fourfold axis and the AuS(4) group has square-planar geometry. The anion shows a two-dimensional linkage through pi-pi and C-F...pi intermolecular interactions.