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Roots are the hidden and most important part of plants. They serve as stabilizers and channels for uptaking water and nutrients and play a crucial role in the growth and development of plants. Here, two-dimensional image data were used to identify quantitative trait loci (QTL) controlling root traits in an interspecific mapping population derived from a cross between wild soybean 'PI366121' and cultivar 'Williams 82'. A total of 2830 single-nucleotide polymorphisms were used for genotyping, constructing genetic linkage maps, and analyzing QTLs. Forty-two QTLs were identified on twelve chromosomes, twelve of which were identified as major QTLs, with a phenotypic variation range of 36.12% to 39.11% and a logarithm of odds value range of 12.01 to 17.35. Two significant QTL regions for the average diameter, root volume, and link average diameter root traits were detected on chromosomes 3 and 13, and both wild and cultivated soybeans contributed positive alleles. Six candidate genes, Glyma.03G027500 (transketolase/glycoaldehyde transferase), Glyma.03G014500 (dehydrogenases), Glyma.13G341500 (leucine-rich repeat receptor-like protein kinase), Glyma.13G341400 (AGC kinase family protein), Glyma.13G331900 (60S ribosomal protein), and Glyma.13G333100 (aquaporin transporter) showed higher expression in root tissues based on publicly available transcriptome data. These results will help breeders improve soybean genetic components and enhance soybean root morphological traits using desirable alleles from wild soybeans.
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Mapeamento Cromossômico , Glycine max , Raízes de Plantas , Polimorfismo de Nucleotídeo Único , Locos de Características Quantitativas , Glycine max/genética , Glycine max/anatomia & histologia , Glycine max/crescimento & desenvolvimento , Raízes de Plantas/genética , Raízes de Plantas/crescimento & desenvolvimento , Raízes de Plantas/anatomia & histologia , Mapeamento Cromossômico/métodos , Fenótipo , Cromossomos de Plantas/genética , Ligação Genética , GenótipoRESUMO
CONTEXT: Pure post-pubertal yolk sac tumors (YSTs) are an extremely rare type of malignant germ cell tumor (GCT) that account for <1 % of testicular GCTs. Clinically, they are more aggressive compared to the more common pre-pubertal counterpart. The aim of this study is to analyze the clinical presentation, ancillary tests and clinical outcomes in addition to presenting a spectrum of histomorphological features, in a case series along with a literature review. DESIGN: A retrospective review of 4 cases of pure post-pubertal YST of the testis was performed. Data collected for each patient included demographics, clinical presentation, serum markers, radiology and pathologic findings, treatment, and clinical outcomes. RESULTS: All patients presented with a testicular mass with or without associated pain and elevated serum alpha-feto protein. Mean age at presentation was 36 years (range 25-68 years). Two patients presented with metastatic disease at the time of diagnosis. Histologic patterns and features are as follows: germ cell neoplasia in-situ (n = 4), reticular/microcystic, solid, glandular, papillary, endometrioid, cystic, necrosis and angiolymphatic invasion (n = 3). Fluorescent in-situ hybridization test performed on Case 2, showed presence of isochromosome 12p and next generation sequencing showed gains of 12p. Case 1, 2 and 4 showed metastatic disease on follow-up. CONCLUSIONS: Diagnosis of pure post-pubertal YST remains challenging due to the variety of morphologic patterns often present in these tumors. Extensive sampling along with use of ancillary tests is the key for diagnosis. In this study, 75 % of cases had metastatic disease at or after the diagnosis confirming the aggressive nature of this rare entity.
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Tumor do Seio Endodérmico , Neoplasias Embrionárias de Células Germinativas , Neoplasias Testiculares , Masculino , Humanos , Adulto , Pessoa de Meia-Idade , Idoso , Neoplasias Testiculares/patologia , Tumor do Seio Endodérmico/patologia , Saco Vitelino/metabolismo , Saco Vitelino/patologiaRESUMO
Zinc (Zn) deficiency is a common limiting factor in agricultural soils, which leads to significant reduction in both the yield and nutritional quality of agricultural produce. Exploring the quantitative trait loci (QTL) for shoot and grain Zn accumulation would help to develop new barley cultivars with greater Zn accumulation efficiency. In this study, two glasshouse experiments were conducted by growing plants under adequate and low Zn supply. From the preliminary screening of ten barley cultivars, Sahara (0.05 mg/pot) and Yerong (0.06 mg/pot) showed the lowest change in shoot Zn accumulation, while Franklin (0.16 mg/pot) had the highest change due to changes in Zn supply for plant growth. Therefore, the double haploid (DH) population derived from Yerong × Franklin was selected to identify QTL for shoot mineral accumulation and biomass production. A major QTL hotspot was detected on chromosome 2H between 31.91 and 73.12 cM encoding genes for regulating shoot mineral accumulations of Zn, Fe, Ca, K and P, and the biomass. Further investigation demonstrated 16 potential candidate genes for mineral accumulation, in addition to a single candidate gene for shoot biomass in the identified QTL region. This study provides a useful resource for enhancing nutritional quality and yield potential in future barley breeding programs.
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Hordeum , Desnutrição , Zinco , Hordeum/genética , Locos de Características Quantitativas , Biomassa , Melhoramento Vegetal , MineraisRESUMO
OBJECTIVE: To compare the effectiveness of Kaltenborn mobilization combined with thermotherapy versus Kaltenborn mobilization alone in patients with adhesive capsulitis. METHODS: The randomised controlled trial was conducted at the Hayatabad Medical Complex and Habib Physiotherapy Complex, Peshawar, Pakistan, from January to June 2017, and comprised patients with adhesive capsulitis. The subjects were randomised into two groups. Group A received Kaltenborn mobilisation with thermotherapy, while group B received Kaltenborn mobilisation alone. Shoulder pain and disability index was used to assess the effectiveness of the intervention. SPSS 20 was used for data analysis. RESULTS: Of the 30 patients, 15(50%) were in each of the two groups. Baseline characteristics were not significantly different between the groups (p>0.05). Pre- and post-treatment Shoulder pain and disability index score of group A was 75.27}5.738 and 12.33}1.988 respectively (p<0.05). Corresponding scores in group B were 73.67}6.137 and 64.13}5 (p<0.05). Group A showed greater reduction in disability compared to group B (p<0.05). CONCLUSIONS: Kaltenborn mobilisation combined with thermotherapy was found to be more effective than Kaltenborn mobilisation alone in patients with adhesive capsulitis.
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Bursite/terapia , Temperatura Alta/uso terapêutico , Hipertermia Induzida/métodos , Modalidades de Fisioterapia , Articulação do Ombro/fisiopatologia , Adulto , Bursite/fisiopatologia , Terapia Combinada , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Paquistão , Amplitude de Movimento Articular , Resultado do TratamentoRESUMO
Bok choy is an important Brassica vegetable which is also known for its wide range of cultivars that differ in their appearance, leaf color, size and shape. For the purpose to investigate the effect of these phenotypic differences on their lipid composition, seven morphotypes of NHCC (Suzhouqing, Aijaohuang, Wutacai, Yellowrose, Ziluolan, Xiangqingcai and Zicaitai) were selected for this study. For this reason, extensive metabolic approach was adopted which was mainly focused on lipidomics. The overall metabolic position of lipids was determined and the isolated lipid compounds were characterized on the basis of their lipid classes. Moreover, discriminative analysis was applied to monitor the distribution pattern of lipid in different cultivars. Aijiaohuang was the leading cultivar which contained highest lipid levels, whereas least proportion was found in Zicaitai. We proposed that leaf color might have an effect on the lipid composition such as purple cultivars were dominated in glycerophopholipids, light green in fatty acids and dark green were rich in glycerolipids. The level of metabolites differed greatly among different genotypes. Lipid-metabolite interactions revealed the positive correlation of lipids with flavonoid and hydroxycinnamoyl derivatives, whereas negative correlation was noticed in case of phenylamines. This is the first comprehensive study based on lipidomics in order to evaluate the substantial impact of various phenotypes on the metabolic composition of NHCC.
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Brassica/anatomia & histologia , Brassica/metabolismo , Metabolismo dos Lipídeos , Lipídeos/química , Metaboloma , Brassica/genética , Genótipo , Metabolômica , Folhas de Planta/metabolismoAssuntos
Pesquisa Biomédica , Dermatologia , Humanos , Estados Unidos , Estudos Retrospectivos , Canadá , Academias e InstitutosRESUMO
BACKGROUND: The dissemination of circulating tumor cells (CTCs) that cause metastases in distant organs accounts for the majority of cancer-related deaths. CTCs have been established as a cancer biomarker of known prognostic value. The enrichment of viable CTCs for ex vivo analysis could further improve cancer diagnosis and guide treatment selection. We designed a new flexible micro spring array (FMSA) device for the enrichment of viable CTCs independent of antigen expression. METHODS: Unlike previous microfiltration devices, flexible structures at the micro scale minimize cell damage to preserve viability, while maximizing throughput to allow rapid enrichment directly from whole blood with no need for sample preprocessing. Device performance with respect to capture efficiency, enrichment against leukocytes, viability, and proliferability was characterized. CTCs and CTC microclusters were enriched from clinical samples obtained from breast, lung, and colorectal cancer patients. RESULTS: The FMSA device enriched tumor cells with 90% capture efficiency, higher than 10(4) enrichment, and better than 80% viability from 7.5-mL whole blood samples in <10 min on a 0.5-cm(2) device. The FMSA detected at least 1 CTC in 16 out of 21 clinical samples (approximately 76%) compared to 4 out of 18 (approximately 22%) detected with the commercial CellSearch® system. There was no incidence of clogging in over 100 tested fresh whole blood samples. CONCLUSIONS: The FMSA device provides a versatile platform capable of viable enrichment and analysis of CTCs from clinically relevant volumes of whole blood.
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Separação Celular/instrumentação , Ensaios de Triagem em Larga Escala/instrumentação , Células Neoplásicas Circulantes , Análise Serial de Tecidos/instrumentação , Contagem de Células , Técnicas de Cultura de Células , Linhagem Celular Tumoral , Proliferação de Células , Separação Celular/métodos , Sobrevivência Celular , Desenho de Equipamento , Ensaios de Triagem em Larga Escala/métodos , Humanos , Leucócitos/citologia , Modelos Biológicos , Células Neoplásicas Circulantes/patologia , Análise Serial de Tecidos/métodosRESUMO
Detrimental effects of salinity could be mitigated by exogenous zinc (Zn) application; however, the mechanisms underlying this amelioration are poorly understood. This study demonstrated the interaction between Zn and salinity by measuring plant biomass, photosynthetic performance, ion concentrations, ROS accumulation, antioxidant activity and electrophysiological parameters in barley (Hordeum vulgare L.). Salinity stress (200mM NaCl for 3weeks) resulted in a massive reduction in plant biomass; however, both fresh and dry weight of shoots were increased by ~30% with adequate Zn supply. Zinc supplementation also maintained K+ and Na+ homeostasis and prevented H2 O2 toxicity under salinity stress. Furthermore, exposure to 10mM H2 O2 resulted in massive K+ efflux from root epidermal cells in both the elongation and mature root zones, and pre-treating roots with Zn reduced ROS-induced K+ efflux from the roots by 3-4-fold. Similar results were observed for Ca2+ . The observed effects may be causally related to more efficient regulation of cation-permeable non-selective channels involved in the transport and sequestration of Na+ , K+ and Ca2+ in various cellular compartments and tissues. This study provides valuable insights into Zn protective functions in plants and encourages the use of Zn fertilisers in barley crops grown on salt-affected soils.
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Homeostase , Hordeum , Raízes de Plantas , Potássio , Salinidade , Zinco , Hordeum/efeitos dos fármacos , Hordeum/crescimento & desenvolvimento , Hordeum/metabolismo , Raízes de Plantas/efeitos dos fármacos , Raízes de Plantas/crescimento & desenvolvimento , Raízes de Plantas/metabolismo , Zinco/farmacologia , Zinco/metabolismo , Homeostase/efeitos dos fármacos , Potássio/metabolismo , Espécies Reativas de Oxigênio/metabolismo , Sódio/metabolismo , Estresse Salino/efeitos dos fármacos , Fotossíntese/efeitos dos fármacos , Peróxido de Hidrogênio/metabolismo , Antioxidantes/farmacologia , Antioxidantes/metabolismoRESUMO
Pakistan falls significantly below the recommended forest coverage level of 20 to 30 percent of total area, with less than 6 percent of its land under forest cover. This deficiency is primarily attributed to illicit deforestation for wood and charcoal, coupled with a failure to embrace advanced techniques for forest estimation, monitoring, and supervision. Remote sensing techniques leveraging Sentinel-2 satellite images were employed. Both single-layer stacked images and temporal layer stacked images from various dates were utilized for forest classification. The application of an artificial neural network (ANN) supervised classification algorithm yielded notable results. Using a single-layer stacked image from Sentinel-2, an impressive 91.37% training overall accuracy and 0.865 kappa coefficient were achieved, along with 93.77% testing overall accuracy and a 0.902 kappa coefficient. Furthermore, the temporal layer stacked image approach demonstrated even better results. This method yielded 98.07% overall training accuracy, 97.75% overall testing accuracy, and kappa coefficients of 0.970 and 0.965, respectively. The random forest (RF) algorithm, when applied, achieved 99.12% overall training accuracy, 92.90% testing accuracy, and kappa coefficients of 0.986 and 0.882. Notably, with the temporal layer stacked image of the Sentinel-2 satellite, the RF algorithm reached exceptional performance with 99.79% training accuracy, 96.98% validation accuracy, and kappa coefficients of 0.996 and 0.954. In terms of forest cover estimation, the ANN algorithm identified 31.07% total forest coverage in the District Abbottabad region. In comparison, the RF algorithm recorded a slightly higher 31.17% of the total forested area. This research highlights the potential of advanced remote sensing techniques and machine learning algorithms in improving forest cover assessment and monitoring strategies.
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The Sogatella furcifera (Horváth) (Homoptera: Delphacidae) is a white-backed planthopper (WBPH) that causes "hopper burn" in rice, resulting in severe yield loss. Gamma-aminobutyric acid (GABA) is a well-known neurotransmitter that inhibits neurotransmission in insects by binding to specific receptors. In this study, we investigated the potential role of GABA in modulating rice resistance to WBPH and evaluated possible defense mechanisms. The experiment was conducted in green house in pots consist of four groups: control, GABA-treated, WBPH-infested, and WBPH-infested treated with GABA. Among the various tested concentration of GABA, 15 mM GABA was applied as a single treatment in water. The treatment was administered one week before WBPH infestation. The results revealed that 15 mM GABA treatment strongly increased WBPH resistance. A plate-based assay indicated that direct application of 15 mM GABA increased the mortality rate of WBPH and increased the damage recovery rate in rice plants. We found that GABA treatment increased the activation of antioxidant enzymes and reduced the reactive oxygen species content and malondialdehyde contents, and reduced the damage rate caused by WBPH. Interestingly, GABA-supplemented plants infested with WBPH exhibited increased phenylalanine ammonia-lyase and pathogenesis-related (PR) genes expression levels. GABA induced the accumulation of abscisic acid (ABA) and salicylic acid (SA) and enhanced the stomata closure and reduced leaf vessels to reduce water conductance during WBPH stress. Furthermore, we found that GABA application to the plant induced the expression of Jasmonic acid (JA) biosynthesis genes (LOX, AOS, AOC, and OPR) and melatonin biosynthesis-related genes (TDC, T5H, ASMT, and SNAT). Our study suggested that GABA increases resistance against WBPH infestation by regulating antioxidant defense system, TCA cycle regulation, phytohormonal signaling, and PR gene regulation.
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Agricultural Remote Sensing has the potential to enhance agricultural monitoring in smallholder economies to mitigate losses. However, its widespread adoption faces challenges, such as diminishing farm sizes, lack of reliable data-sets and high cost related to commercial satellite imagery. This research focuses on opportunities, practices and novel approaches for effective utilization of remote sensing in agriculture applications for smallholder economies. The work entails insights from experiments using datasets representative of major crops during different growing seasons. We propose an optimized solution for addressing challenges associated with remote sensing-based crop mapping in smallholder agriculture farms. Open source tools and data are used for inter and intra-sensor image registration, with a root mean square error of 0.3 or less. We also propose and emphasize on the use of delineated vegetation parcels through Segment Anything Model for Geospatial (SAM-GEOs). Furthermore a Bidirectional-Long Short-Term Memory-based (Bi-LSTM) deep learning model is developed and trained for crop classification, achieving results with accuracy of more than 94% and 96% for validation sets of two data sets collected in the field, during 2 growing seasons.
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Agricultura , Imagens de Satélites , Agricultura/métodos , Fazendas , Estações do Ano , Produtos AgrícolasRESUMO
OBJECTIVES: Absence seizures impair psychosocial function, yet their detailed neuronal basis remains unknown. Recent work in a rat model suggests that cortical arousal state changes prior to seizures and that single neurons show diverse firing patterns during seizures. Our aim was to extend these investigations to a mouse model with studies of neuronal activity and arousal state to facilitate future fundamental investigations of absence epilepsy. METHODS: We performed in vivo extracellular single unit recordings on awake head-fixed C3H/HeJ mice. Mice were implanted with tripolar electrodes for cortical electroencephalography (EEG). Extracellular single unit recordings were obtained with glass micropipettes in the somatosensory barrel cortex, while animals ambulated freely on a running wheel. Signals were digitized and analyzed during seizures and at baseline. RESULTS: Neuronal activity was recorded from 36 cortical neurons in 19 mice while EEG showed characteristic 7-8 Hz spike-wave discharges. Different single neurons showed distinct firing patterns during seizures, but the overall mean population neuronal firing rate during seizures was no different from pre-seizure baseline. However, the rhythmicity of neuronal firing during seizures was significantly increased (p < 0.001). In addition, beginning 10s prior to seizure initiation, we observed a progressive decrease in cortical high frequency (>40 Hz) EEG and an increase in lower frequency (1-39 Hz) activity suggesting decreased arousal state. SIGNIFICANCE: We found that the awake head-fixed C3H/HeJ mouse model demonstrated rhythmic neuronal firing during seizures, and a decreased cortical arousal state prior to seizure onset. Unlike the rat model we did not observe an overall decrease in neuronal firing during seizures. Similarities and differences across species strengthen the ability to investigate fundamental key mechanisms. Future work in the mouse model will identify the molecular basis of neurons with different firing patterns, their role in seizure initiation and behavioral deficits, with ultimate translation to human absence epilepsy.
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Arsenic, a hazardous heavy metal with potent carcinogenic properties, significantly affects key rice-producing regions worldwide. In this study, we present a quantitative trait locus (QTL) mapping investigation designed to identify candidate genes responsible for conferring tolerance to arsenic toxicity in rice (Oryza sativa L.) during the seedling stage. This study identified 17 QTLs on different chromosomes, including qCHC-1 and qCHC-3 on chromosome 1 and 3 related to chlorophyll content and qRFW-12 on chromosome 12 related to root fresh weight. Gene expression analysis revealed eight candidate genes exhibited significant upregulation in the resistant lines, OsGRL1, OsDjB1, OsZIP2, OsMATE12, OsTRX29, OsMADS33, OsABCG29, and OsENODL24. These genes display sequence alignment and phylogenetic tree similarities with other species and engaging in protein-protein interactions with significant proteins. Advanced gene-editing techniques such as CRISPR-Cas9 to precisely target and modify the candidate genes responsible for arsenic tolerance will be explore. This approach may expedite the development of arsenic-resistant rice cultivars, which are essential for ensuring food security in regions affected by arsenic-contaminated soil and water.
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Arsênio , Oryza , Locos de Características Quantitativas , Estresse Fisiológico , Oryza/genética , Oryza/efeitos dos fármacos , Oryza/metabolismo , Arsênio/toxicidade , Locos de Características Quantitativas/genética , Estresse Fisiológico/genética , Estresse Fisiológico/efeitos dos fármacos , Haploidia , Mapeamento Cromossômico , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Genes de Plantas , Regulação da Expressão Gênica de Plantas/efeitos dos fármacos , Cromossomos de Plantas/genéticaRESUMO
BACKGROUND: Epilepsy is a prevalent disease that requires personalized care to control seizures, reduce side effects, and ameliorate the burden of comorbidities. Smoking is a major cause of preventable death and disease. There is evidence that patients with epilepsy smoke at high rates and that smoking may increase seizure frequency. However, there is a lack systematically synthesized evidence on the interactions between epilepsy and seizures and smoking, tobacco use, vaping, and smoking cessation. METHODS AND ANALYSIS: This scoping review protocol guided by the Joanna Briggs Institute Manual for Evidence Synthesis and the PRISMA Extension for Scoping Reviews will investigate what is known about the interactions between smoking and epilepsy. This review will include the population of persons with all types of epilepsy or seizures and examine an inclusive list of concepts including tobacco use, vaping, nicotine replacement, and smoking cessation. The MEDLINE, Embase, APA Psycinfo, CINAHL, Cochrane, Scopus, and Web of Science databases will be searched. Following systematic screening of records, data will be charted, synthesized, and summarized for presentation and publication. ETHICS AND DISSEMINATION: No ethical approval is required for this literature-based study. The results of this scoping review will be submitted for publication in a peer-reviewed journal. This synthesis will be informative to clinicians and direct further research that may improve health outcomes for people with epilepsy. REGISTRATION: This protocol is registered with the Open Science Framework (DOI: https://doi.org/10.17605/OSF.IO/D3ZK8).
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Epilepsia , Abandono do Hábito de Fumar , Vaping , Humanos , Nicotina/efeitos adversos , Vaping/efeitos adversos , Dispositivos para o Abandono do Uso de Tabaco , Fumar/efeitos adversos , Fumar Tabaco , Convulsões/epidemiologia , Epilepsia/epidemiologia , Projetos de Pesquisa , Revisões Sistemáticas como Assunto , Literatura de Revisão como AssuntoRESUMO
OBJECTIVES: Clinical experts recommend against testing for lupus anticoagulant (LAC) during anticoagulation. METHODS: We quantitated the risk of a single-positive dilute Russell viper venom time (dRVVT) result or partial thromboplastin time-based phospholipid neutralization (PN) result on anticoagulation. RESULTS: Any anticoagulation led to a fourfold greater likelihood of single-positive results, primarily by rivaroxaban (odds ratio [OR]â =â 8.6) and warfarin (ORâ =â 6.6), resulting in a positive dRVVT test with a normal PN test. Heparin and apixaban were twofold more likely to show single-positive results, but enoxaparin did not show significant single positivity. CONCLUSIONS: Our results quantitatively support experts' avoidance of LAC testing during anticoagulation.
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Anticoagulantes , Síndrome Antifosfolipídica , Humanos , Inibidor de Coagulação do Lúpus , Testes de Coagulação Sanguínea/métodos , Varfarina , Tempo de Tromboplastina Parcial , Fosfolipídeos , Tempo de ProtrombinaRESUMO
Background: The taboo of menstruation, lack of discussion on puberty, misinformation and poor awareness on menstrual hygiene management and limited access to safe menstrual products can negatively impact the physical and mental health of women and girls residing in low middle income countries. Aim: The aim of the study was to explore the experiences, awareness, perceptions and attitudes of women and girls towards menstrual hygiene management in Pakistan. Moreover, the study also assessed consumer satisfaction towards locally manufactured organic menstrual products. Methods: A descriptive cross-sectional study design was used with a sample of 400 women and girls selected through convenience sampling from high schools, universities, outpatient department and gynaecological clinics located in 2 cities, i.e., Islamabad and Rawalpindi, Pakistan. A pre-structured questionnaire was used to explore experiences, awareness, perceptions and attitudes of women and girls towards menstrual hygiene management. Moreover, each respondent was provided with sample of locally designed and manufactured organic menstrual hygiene & wellness kit by a group of women researchers named "FemPure" including organic sanitary pads, feminine wellness mist and feminine wellness wash. The respondents were asked to use the products and a telephonic follow-up was conducted to assess consumer satisfaction for the products after a period of 1 month. Data was analyzed statistically using SPSS 21. Results: The results of the study reported that 86.2% (n = 345) of the respondents had normal periods. Out of 400 respondents, 58.5% (n = 234) knew about any health conditions related to abnormal menstrual cycle while 88.3% (n = 353) were aware of female menstrual hygiene. Majority of the respondents 78.7% (n = 315) felt ashamed while buying sanitary pads. Out of 400 respondents, 5.4% (n = 22) were interested in getting awareness regarding menstrual hygiene. The results of the study showed that all the respondents (100%, n = 400) were satisfied with FemPure organic menstrual products. Conclusion: The study concluded that majority of women and girls faced menstrual hygiene issues during and after the cycle and were eager to receive information on MHM and use organic rash free menstrual wellness products which could be ordered via mobile app. The respondents were satisfied after the use of FemPure organic menstrual products.
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In view of the challenges faced by organizations and departments concerned with agricultural capacity observations, we collected In-Situ data consisting of diverse crops (More than 11 consumable vegetation types) in our pilot region of Harichand Charsadda, Khyber Pakhtunkhwa (KP), Pakistan. Our proposed Long Short-Term Memory based Deep Neural network model was trained for land cover land use statistics generation using the acquired ground truth data, for a synergy between Planet-Scope Dove and European Space Agency's Sentinel-2. Total of 4 bands from both sentinel-2 and planet scope including Red, Green, Near-Infrared (NIR) and Normalised Difference Vegetation Index (NDVI) were used for classification purpose. Using short temporal frame of Sentinel-2 comprising 5 date images, we propose an realistic and implementable procedure for generating accurate crop statistics using remote sensing. Our self collected data-set consists of a total number of 107,899 pixels which was further split into 70% and 30% for training and testing purpose of the model respectively. The collected data is in the shape of field parcels, which has been further split for training, validation and test sets, to avoid spatial auto-correlation. To ensure the quality and accuracy 15% of the training data was left out for validation purpose, and 15% for testing. Prediction was also performed on our trained model and visual analysis of the area from the image showed significant results. Further more a comparison between Sentinel-2 time series is performed separately from the fused Planet-Scope and Sentinel-2 time-series data sets. The results achieved shows a weighted average of 93% for Sentinel-2 time series and 97% for fused Planet-Scope and Sentinel-2 time series.
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Produtos Agrícolas , Imagens de Satélites , Imagens de Satélites/métodos , Memória de Curto Prazo , Planetas , Redes Neurais de ComputaçãoRESUMO
Deep learning based data driven methods with multi-sensors spectro-temporal data are widely used for pattern identification and land-cover classification in remote sensing domain. However, adjusting the right tuning for the deep learning models is extremely important as different parameter setting can alter the performance of the model. In our research work, we have evaluated the performance of Convolutional Long Short-Term Memory (ConvLSTM) and deep learning techniques, over various hyper-parameters setting for an imbalanced dataset and the one with highest performance is utilized for land-cover classification. The parameters that are considered for experimentation are; Batch size, Number of Layers in ConvLSTM model, and No of filters in each layer of the ConvLSTM are the parameters that will be considered for our experimentation. Experiments also have been conducted on LSTM model for comparison using the same hyper-parameters. It has been found that the two layered ConvLSTM model having 16-filters and a batch size of 128 outperforms other setting scenarios, with an overall validation accuracy of 97.71%. The accuracy achieved for the LSTM is 93.9% for training and 92.7% for testing.
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Memória de Longo Prazo , Redes Neurais de ComputaçãoRESUMO
Soybean (Glycine max L. Merr.) is a crucial oilseed cash crop grown worldwide and consumed as oil, protein, and food by humans and feed by animals. Comparatively, soybean seed yield is lower than cereal crops, such as maize, rice, and wheat, and the demand for soybean production does not keep up with the increasing consumption level. Therefore, increasing soybean yield per unit area is the most crucial breeding objective and is challenging for the scientific community. Moreover, yield and associated traits are extensively researched in cereal crops, but little is known about soybeans' genetics, genomics, and molecular regulation of yield traits. Soybean seed yield is a complex quantitative trait governed by multiple genes. Understanding the genetic and molecular processes governing closely related attributes to seed yield is crucial to increasing soybean yield. Advances in sequencing technologies have made it possible to conduct functional genomic research to understand yield traits' genetic and molecular underpinnings. Here, we provide an overview of recent progress in the genetic regulation of seed size in soybean, molecular, genetics, and genomic bases of yield, and related key seed yield traits. In addition, phytohormones, such as auxin, gibberellins, cytokinins, and abscisic acid, regulate seed size and yield. Hence, we also highlight the implications of these factors, challenges in soybean yield, and seed trait improvement. The information reviewed in this study will help expand the knowledge base and may provide the way forward for developing high-yielding soybean cultivars for future food demands.
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The lack of irrigation water in agricultural soils poses a significant constraint on global crop production. In-depth investigation into microRNAs (miRNAs) has been widely used to achieve a comprehensive understanding of plant defense mechanisms. However, there is limited knowledge on the association of miRNAs with drought tolerance in cigar tobacco. In this study, a hydroponic experiment was carried out to identify changes in plant physiological characteristics, miRNA expression and metabolite profile under drought stress, and examine the mitigating effects of selenium (Se) application. The shoot dry weight of drought-stressed plants was approximately half (50.3%) of that in non-stressed (control) conditions. However, plants supplied with Se attained 38.8% greater shoot dry weight as compared to plants with no Se supply under drought stress. Thirteen miRNAs were identified to be associated with drought tolerance. These included 7 known (such as nta-miR156b and nta-miR166a) and 6 novel miRNAs (such as novel-nta-miR156-5p and novel-nta-miR209-5p) with the target genes of squamosa promoter-binding-like protein 4 (SPL4), serine/threonine protein phosphatase 2A (PPP2A), cation/calcium exchanger 4-like (CCX4), extensin-1-like (EXT1) and reduced wall acetylation 2 (RWA2). Further investigation revealed that the expression levels of Ext1 and RWA2 were significantly decreased under drought stress but increased with Se addition. Moreover, key metabolites such as catechin and N-acetylneuraminic acid were identified, which may play a role in the regulation of drought tolerance. The integrated analysis of miRNA sequencing and metabolome highlighted the significance of the novel-nta-miR97-5p- LRR-RLK- catechin pathway in regulating drought tolerance. Our findings provide valuable insights into the molecular mechanisms underlying drought tolerance and Se-induced stress alleviation in cigar tobacco.