Detalhe da pesquisa
1.
Mapping of antibody epitopes based on docking and homology modeling.
Proteins
; 91(2): 171-182, 2023 02.
Artigo
Inglês
| MEDLINE | ID: mdl-36088633
2.
Accurate ligand-protein docking in CASP15 using the ClusPro LigTBM server.
Proteins
; 91(12): 1822-1828, 2023 Dec.
Artigo
Inglês
| MEDLINE | ID: mdl-37697630
3.
High Accuracy Prediction of PROTAC Complex Structures.
J Am Chem Soc
; 145(13): 7123-7135, 2023 04 05.
Artigo
Inglês
| MEDLINE | ID: mdl-36961978
4.
Assessing the binding properties of CASP14 targets and models.
Proteins
; 89(12): 1922-1939, 2021 12.
Artigo
Inglês
| MEDLINE | ID: mdl-34368994
5.
Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.
Proteins
; 89(12): 1800-1823, 2021 12.
Artigo
Inglês
| MEDLINE | ID: mdl-34453465
6.
Opinion: Protein folds vs. protein folding: Differing questions, different challenges.
Proc Natl Acad Sci U S A
; 120(1): e2214423119, 2023 01 03.
Artigo
Inglês
| MEDLINE | ID: mdl-36580595
7.
ClusPro in rounds 38 to 45 of CAPRI: Toward combining template-based methods with free docking.
Proteins
; 88(8): 1082-1090, 2020 08.
Artigo
Inglês
| MEDLINE | ID: mdl-32142178
8.
Sampling and refinement protocols for template-based macrocycle docking: 2018 D3R Grand Challenge 4.
J Comput Aided Mol Des
; 34(2): 179-189, 2020 02.
Artigo
Inglês
| MEDLINE | ID: mdl-31879831
9.
Template-based modeling by ClusPro in CASP13 and the potential for using co-evolutionary information in docking.
Proteins
; 87(12): 1241-1248, 2019 12.
Artigo
Inglês
| MEDLINE | ID: mdl-31444975
10.
Monte Carlo on the manifold and MD refinement for binding pose prediction of protein-ligand complexes: 2017 D3R Grand Challenge.
J Comput Aided Mol Des
; 33(1): 119-127, 2019 01.
Artigo
Inglês
| MEDLINE | ID: mdl-30421350
11.
Corrigendum: Integrated metabolomics and proteomics reveal biomarkers associated with hemodialysis in end-stage kidney disease.
Front Pharmacol
; 15: 1376058, 2024.
Artigo
Inglês
| MEDLINE | ID: mdl-38405670
12.
The ClusPro AbEMap web server for the prediction of antibody epitopes.
Nat Protoc
; 18(6): 1814-1840, 2023 Jun.
Artigo
Inglês
| MEDLINE | ID: mdl-37188806
13.
Integrated metabolomics and proteomics reveal biomarkers associated with hemodialysis in end-stage kidney disease.
Front Pharmacol
; 14: 1243505, 2023.
Artigo
Inglês
| MEDLINE | ID: mdl-38089059
14.
Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT.
Nat Commun
; 14(1): 688, 2023 02 08.
Artigo
Inglês
| MEDLINE | ID: mdl-36755019
15.
Side-chain Packing Using SE(3)-Transformer.
Pac Symp Biocomput
; 27: 46-55, 2022.
Artigo
Inglês
| MEDLINE | ID: mdl-34890135
16.
Elucidation of protein function using computational docking and hotspot analysis by ClusPro and FTMap.
Acta Crystallogr D Struct Biol
; 78(Pt 6): 690-697, 2022 Jun 01.
Artigo
Inglês
| MEDLINE | ID: mdl-35647916
17.
Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery.
Nat Commun
; 13(1): 4043, 2022 07 13.
Artigo
Inglês
| MEDLINE | ID: mdl-35831314
18.
AbAdapt: an adaptive approach to predicting antibody-antigen complex structures from sequence.
Bioinform Adv
; 2(1): vbac015, 2022.
Artigo
Inglês
| MEDLINE | ID: mdl-36699363
19.
Light-mediated multi-target protein degradation using arylazopyrazole photoswitchable PROTACs (AP-PROTACs).
Chem Commun (Camb)
; 58(78): 10933-10936, 2022 Sep 29.
Artigo
Inglês
| MEDLINE | ID: mdl-36065962
20.
Conservation of binding properties in protein models.
Comput Struct Biotechnol J
; 19: 2549-2566, 2021.
Artigo
Inglês
| MEDLINE | ID: mdl-34025942