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1.
Sci Total Environ ; 951: 175001, 2024 Jul 23.
Artigo em Inglês | MEDLINE | ID: mdl-39053532

RESUMO

Albeit remote, Arctic benthic ecosystems are impacted by fisheries and climate change. Yet, anthropogenic impacts are poorly understood, as benthic ecosystems and their drivers have not been mapped over large areas. We disentangle spatial patterns and drivers of benthic epifauna (animals living on the seabed surface) in West Greenland, by integrating an extensive beam-trawl dataset (326 stations, 59-75°N, 30-1400 m water depth) with environmental data. We find high variability at different spatial scales: (1) Epifauna biomass decreases with increasing latitude, sea-ice cover and water depth, related to food limitation. (2) In Greenland, the Labrador Sea in the south shows higher epifauna taxon richness compared to Baffin Bay in the north. Τhe interjacent Davis Strait forms a permeable boundary for epifauna dispersal and a mixing zone for Arctic and Atlantic taxa, featuring regional biodiversity hotspots. (3) The Labrador Sea and Davis Strait provide suitable habitats for filter-feeding epifauna communities of high biomass e.g., sponges on the steep continental slope and sea cucumbers on shallow banks. In Baffin Bay, the deeper continental shelf, more gentle continental slope, lower current speed and lower phytoplankton biomass promote low-biomass epifauna communities, predominated by sea stars, anemones, or shrimp. (4) Bottom trawling reduces epifauna biomass and taxon richness throughout the study area, where sessile filter feeders are particularly vulnerable. Climate change with diminished sea ice cover in Baffin Bay may amplify food availability to epifauna, thereby increasing their biomass. While more species might expand northward due to the general permeability of Davis Strait, an extensive colonization of Baffin Bay by high-biomass filter-feeding epifauna remains unlikely, given the lack of suitable habitats. The pronounced vulnerability of diverse and biomass-rich epifauna communities to bottom trawling emphasizes the necessity for an informed and sustainable ecosystem-based management in the face of rapid climate change.

2.
Sci Data ; 7(1): 176, 2020 07 09.
Artigo em Inglês | MEDLINE | ID: mdl-32647176

RESUMO

Bathymetry (seafloor depth), is a critical parameter providing the geospatial context for a multitude of marine scientific studies. Since 1997, the International Bathymetric Chart of the Arctic Ocean (IBCAO) has been the authoritative source of bathymetry for the Arctic Ocean. IBCAO has merged its efforts with the Nippon Foundation-GEBCO-Seabed 2030 Project, with the goal of mapping all of the oceans by 2030. Here we present the latest version (IBCAO Ver. 4.0), with more than twice the resolution (200 × 200 m versus 500 × 500 m) and with individual depth soundings constraining three times more area of the Arctic Ocean (∼19.8% versus 6.7%), than the previous IBCAO Ver. 3.0 released in 2012. Modern multibeam bathymetry comprises ∼14.3% in Ver. 4.0 compared to ∼5.4% in Ver. 3.0. Thus, the new IBCAO Ver. 4.0 has substantially more seafloor morphological information that offers new insights into a range of submarine features and processes; for example, the improved portrayal of Greenland fjords better serves predictive modelling of the fate of the Greenland Ice Sheet.

3.
J Biomol Tech ; 28(1): 31-39, 2017 04.
Artigo em Inglês | MEDLINE | ID: mdl-28337070

RESUMO

The Extreme Microbiome Project (XMP) is a project launched by the Association of Biomolecular Resource Facilities Metagenomics Research Group (ABRF MGRG) that focuses on whole genome shotgun sequencing of extreme and unique environments using a wide variety of biomolecular techniques. The goals are multifaceted, including development and refinement of new techniques for the following: 1) the detection and characterization of novel microbes, 2) the evaluation of nucleic acid techniques for extremophilic samples, and 3) the identification and implementation of the appropriate bioinformatics pipelines. Here, we highlight the different ongoing projects that we have been working on, as well as details on the various methods we use to characterize the microbiome and metagenome of these complex samples. In particular, we present data of a novel multienzyme extraction protocol that we developed, called Polyzyme or MetaPolyZyme. Presently, the XMP is characterizing sample sites around the world with the intent of discovering new species, genes, and gene clusters. Once a project site is complete, the resulting data will be publically available. Sites include Lake Hillier in Western Australia, the "Door to Hell" crater in Turkmenistan, deep ocean brine lakes of the Gulf of Mexico, deep ocean sediments from Greenland, permafrost tunnels in Alaska, ancient microbial biofilms from Antarctica, Blue Lagoon Iceland, Ethiopian toxic hot springs, and the acidic hypersaline ponds in Western Australia.


Assuntos
Microbiologia Ambiental , Microbiota/genética , DNA Bacteriano/genética , DNA Bacteriano/isolamento & purificação , Ambientes Extremos , Metagenoma , Tipagem Molecular/normas , RNA Bacteriano/genética , RNA Bacteriano/isolamento & purificação , Padrões de Referência , Análise de Sequência de DNA/normas
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