Application of percarbonate and peroxymonocarbonate in decontamination technologies.

Sodium percarbonate (SPC) and peroxymonocarbonate (PMC) have been widely used in modified Fenton reactions because of their multiple superior features, such as a wide pH range and environmental friendliness. This broad review is intended to provide the fundamental information, status and progress of SPC and PMC based decontamination technologies according to the peer-reviewed papers in the last two decades. Both SPC and PMC can directly decompose various pollutants. The degradation efficiency will be enhanced and the target contaminants will be expanded after the activation of SPC and PMC. The most commonly used catalysts for SPC activation are iron compounds while cobalt compositions are applied to activate PMC in homogenous and heterogeneous catalytical systems. The generation and participation of hydroxyl, superoxide and/or carbonate radicals are involved in the activated SPC and PMC system. The reductive radicals, such as carbon dioxide and hydroxyethyl radicals, can be generated when formic acid or methanol is added in the Fe(II)/SPC system, which can reduce target contaminants. SPC can also be activated by energy, tetraacetylethylenediamine, ozone and buffered alkaline to generate different reactive radicals for pollutant decomposition. The SPC and activated SPC have been assessed for application in-situ chemical oxidation and sludge dewatering treatment. The challenges and prospects of SPC and PMC based decontamination technologies are also addressed in the last section.

Horizontal transfers of LTR retrotransposons in seven species of Rosales.

Horizontal transposable element transfer (HTT) events have occurred among a large number of species and play important roles in the composition and evolution of eukaryotic genomes. HTTs are also regarded as effective forces in promoting genomic variation and biological innovation. In the present study, HTT events were identified and analyzed in seven sequenced species of Rosales using bioinformatics methods by comparing sequence conservation and Ka/Ks value of reverse transcriptase (RT) with 20 conserved genes, estimating the dating of HTTs, and analyzing the phylogenetic relationships. Seven HTT events involving long terminal repeat (LTR) retrotransposons, two HTTs between Morus notabilis and Ziziphus jujuba, and five between Malus domestica and Pyrus bretschneideri were identified. Further analysis revealed that these LTR retrotransposons had functional structures, and the copy insertion times were lower than the dating of HTTs, particularly in Mn.Zj.1 and Md.Pb.3. Altogether, the results demonstrate that LTR retrotransposons still have potential transposition activity in host genomes. These results indicate that HTT events are another strategy for exchanging genetic material among species and are important for the evolution of genomes.

Carbon nanofibers supported Co/Ag bimetallic nanoparticles for heterogeneous activation of peroxymonosulfate and efficient oxidation of amoxicillin.

The carbon nanofibers supported Co/Ag bimetallic nanoparticles (Co@CNFs-Ag) were synthesized for heterogeneous activation of peroxymonosulfate and efficient oxidation of amoxicillin in this work. Co nanoparticles with a diameter of 20-30 nm were encapsulated in the carbon nanofibers to reduce the loss of Co during the preparation and catalysis processes. Ag nanoparticles (5-10 nm) were distributed on the surface of CNFs. Complete removal of amoxicillin could be achieved within 30 min by Co@CNFs-Ag activated peroxymonosulfate system. The high catalytic performance could be attributed to the large aspect ratio (> 10,000) of the carbon nanofibers and the mutual reaction of the Co/Ag bimetallic nanoparticles with peroxymonosulfate. The optimal mass ratio of oxidant and catalyst was 10 and the optimized pH was 7. Co@CNFs-Ag exhibited stable catalytic activity and minimal metal leakage over a period of 5 cycles. The activation energy of the system was 29.51 kJ/mol derived by the Arrhenius equation. Both hydroxyl and sulfate radicals contributed to amoxicillin degradation and the latter were key to the degradation. Finally, the reaction mechanism of bimetallic synergistic catalytic system and possible amoxicillin degradation pathways were elucidated. The results of this study provide novel insights for application of sulfate radical-based advanced oxidation processes in environmental remediation.

New Insights into Long Terminal Repeat Retrotransposons in Mulberry Species.

The evolutionary dynamics of long terminal repeat (LTR) retrotransposons in tree genomes has remained largely unknown. The availability of the complete genome sequences of the mulberry tree (Morus notabilis) has offered an unprecedented opportunity for us to characterize these retrotransposon elements. We investigated 202 and 114 families of Copia and Gypsy superfamilies, respectively, comprising 2916 intact elements in the mulberry genome. The tRNAMet was the most frequently used type of tRNA in both superfamilies. Phylogenetic analysis suggested that Copia and Gypsy from mulberry can be grouped into eight and six lineages, respectively. All previously characterized families of such elements could also be found in the mulberry genome. About 95% of the identified Copia and Gypsy full elements were estimated to have been inserted into the mulberry genome within the past 2­3 million years. Meanwhile, the estimated insertion times of members of the three most abundant families of the Copia superfamily (908 members from the three most abundant families) and Gypsy superfamily (783 members from the three most abundant families) revealed divergent life histories. Compared with the situation in Gypsy elements, three families of Copia elements are under positive selection pressure, which suggested that Copia elements may have a dominant influence in the evolution of mulberry genes. Analysis of insertion and deletion dynamics suggested that Copia and Gypsy elements exhibited a very long half-life in the mulberry genome. The present work provides new insights into the insertion and deletion dynamics of LTR retrotransposons, and it will greatly improve our understanding of the important roles transposable elements play in the architecture of the mulberry genome.

Distribution and Characteristics of Transposable Elements in the Mulberry Genome.

Mulberry ( C. K. Schneid) leaves have been used as the food for the domesticated silkworm, , for more than 5000 yr, and the mulberry-silkworm relationship is one of the best-known and oldest models of plant defense-insect adaptation. The availability of a genome assembly of mulberry provides us with an opportunity to mine the characteristics and distribution of transposable elements (TEs) in this species and to examine their relationship to genes and gene expression. In this study, a significantly correlated inverse relationship between the percentage coverage of genes and TEs was observed. The TE-rich regions appeared to have a lower percentage of putatively expressed genes. Distribution patterns between different TE superfamilies were detected in the mulberry genome. The elements (the TE making up the greatest proportion of the mulberry genome) were significantly overrepresented within genes in the mulberry genome, and they may have a dominant influence on evolution of the mulberry genome. Approximately 96.93% (330/344) of the TE-containing genes assigned to pathways were assigned to metabolism-related pathways. The TE-related alternative splicing events accounted for 7.58% (402/5,302) of all alternative splicing types in the mulberry genome, suggesting that TEs are one of the driving forces in the formation of the alternatively spliced genes. The results will be valuable in improving our understanding of the important roles of TEs in mulberry genome evolution.