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1.
Biol Lett ; 18(4): 20210519, 2022 04.
Artigo em Inglês | MEDLINE | ID: mdl-35382585

RESUMO

Understanding the causes and consequences of insect declines has become an important goal in ecology, particularly in the tropics, where most terrestrial diversity exists. Over the past 12 years, the ForestGEO Arthropod Initiative has systematically monitored multiple insect groups on Barro Colorado Island (BCI), Panama, providing baseline data for assessing long-term population trends. Here, we estimate the rates of change in abundance among 96 tiger moth species on BCI. Population trends of most species were stable (n = 20) or increasing (n = 62), with few (n = 14) declining species. Our analysis of morphological and climatic sensitivity traits associated with population trends shows that species-specific responses to climate were most strongly linked with trends. Specifically, tiger moth species that are more abundant in warmer and wetter years are more likely to show population increases. Our study contrasts with recent findings indicating insect decline in tropical and temperate regions. These results highlight the significant role of biotic responses to climate in determining long-term population trends and suggest that future climate changes are likely to impact tropical insect communities.


Assuntos
Mariposas , Clima Tropical , Animais , Mudança Climática , Colorado , Ecologia , Mariposas/fisiologia , Árvores
2.
Anal Chem ; 88(24): 12470-12478, 2016 12 20.
Artigo em Inglês | MEDLINE | ID: mdl-28193050

RESUMO

Gaining insight into intermolecular interactions between multiple species is possible at an atomic level by looking at different parameters using different NMR techniques. In the specific case of the astringency sensation, in which at least three molecular species are involved, different NMR techniques combined with dynamic light scattering and molecular modeling contribute to decipher the role of each component in the interaction mode and to assess the thermodynamic parameters governing this complex interaction. The binding process between a saliva peptide, a polyphenol, and polysaccharides was monitored by following 1H chemical shift variations, changes in NMR peak areas, and size of the formed complex. These NMR experiments deliver a complete picture of the association pathway, assessed by dynamic light scattering and molecular dynamics simulations: all of the data collected converge toward a comprehensive mode of interaction in which sugars indirectly play a role in astringency by sequestering part of the polyphenols, reducing their effective concentration to bind saliva proteins.


Assuntos
Ressonância Magnética Nuclear Biomolecular/métodos , Polifenóis/metabolismo , Proteínas e Peptídeos Salivares/metabolismo , Açúcares/metabolismo , Catequina/análogos & derivados , Catequina/metabolismo , Difusão Dinâmica da Luz , Glucose/metabolismo , Humanos , Simulação de Dinâmica Molecular , Peptídeos/metabolismo , Ligação Proteica , Vinho/análise
3.
Biochem Soc Trans ; 42(5): 1435-40, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-25233428

RESUMO

Phosphoinositide-dependent kinase 1 (PDK1) is the master regulator of at least 23 other AGC kinases whose downstream signalling has often been implicated in various diseases and in particular in cancer. Therefore there has been great interest in determining how PDK1 is controlled and how it regulates its substrates spatially and temporally. The understanding of these mechanisms could offer new possibilities for therapeutic intervention. Over the years, a more comprehensive view of the mechanisms involved in the regulation of PDK1 has emerged and these comprise serine/threonine as well as tyrosine phosphorylation, subcellular localization, regulator binding and conformation status. In the present review, we discuss how various molecular mechanisms are together responsible for the conformational regulation behind the activation of PDK1 in cells.


Assuntos
Proteínas Quinases Dependentes de 3-Fosfoinositídeo/metabolismo , Modelos Moleculares , Transdução de Sinais , Proteínas Quinases Dependentes de 3-Fosfoinositídeo/química , Animais , Dimerização , Ativação Enzimática , Humanos , Ligantes , Proteínas de Neoplasias/química , Proteínas de Neoplasias/metabolismo , Fosforilação , Conformação Proteica , Processamento de Proteína Pós-Traducional , Transporte Proteico , Serina/metabolismo , Treonina/metabolismo , Tirosina/metabolismo
4.
Bioorg Med Chem Lett ; 24(11): 2512-6, 2014 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-24767849

RESUMO

A virtual screening strategy, through molecular docking, for the elaboration of an electronic library of Pontin inhibitors has resulted in the identification of two original scaffolds. The chemical synthesis of four candidates allowed extensive biological evaluations for their anticancer activity. Two compounds displayed an effect on Pontin ATPase activity, and one of them also exhibited a noticeable effect on cell growth. Further biological studies revealed that the most active compound induced apoptotic cell death together with necrosis, this latter effect being likely related to the cellular balance of ATP regulation.


Assuntos
Antineoplásicos/farmacologia , Proteínas de Transporte/antagonistas & inibidores , DNA Helicases/antagonistas & inibidores , Desenho de Fármacos , Inibidores Enzimáticos/farmacologia , ATPases Associadas a Diversas Atividades Celulares , Antineoplásicos/síntese química , Antineoplásicos/química , Apoptose/efeitos dos fármacos , Proteínas de Transporte/metabolismo , Proliferação de Células/efeitos dos fármacos , DNA Helicases/metabolismo , Relação Dose-Resposta a Droga , Ensaios de Seleção de Medicamentos Antitumorais , Inibidores Enzimáticos/síntese química , Inibidores Enzimáticos/química , Células HCT116 , Células HL-60 , Humanos , Células KB , Células MCF-7 , Modelos Moleculares , Estrutura Molecular , Relação Estrutura-Atividade
5.
Biochem J ; 450(1): 55-62, 2013 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-23181668

RESUMO

RhoGTPases are GDP/GTP molecular switches that control a wide variety of cellular processes, thereby contributing to many diseases, including cancer. As a consequence, there is great interest in the identification of small-molecule inhibitors of RhoGTPases. In the present paper, using the property of GTP-loaded RhoGTPases to bind to their effectors, we describe a miniaturized and robust assay to monitor Rac1 GTPase activation that is suitable for large-scale high-throughput screening. A pilot compound library screen revealed that the topoisomerase II poison MTX (mitoxantrone) is an inhibitor of Rac1, and also inhibits RhoA and Cdc42 in vitro. We show that MTX prevents GTP binding to RhoA/Rac1/Cdc42 in vitro. Furthermore, MTX strongly inhibits RhoGTPase-mediated F-actin (filamentous actin) reorganization and cell migration. Hence, we report a novel biochemical assay yielding the identification of RhoGTPase inhibitors and we present a proof-of-concept validation with the identification of MTX as a novel pan-RhoGTPase inhibitor.


Assuntos
Mitoxantrona/farmacologia , Proteínas rac1 de Ligação ao GTP/antagonistas & inibidores , Animais , Movimento Celular , Células Endoteliais/fisiologia , Ensaios de Triagem em Larga Escala , Humanos , Transdução de Sinais , Suínos , Proteína cdc42 de Ligação ao GTP/antagonistas & inibidores , Proteína cdc42 de Ligação ao GTP/metabolismo , Proteínas rac1 de Ligação ao GTP/genética , Proteínas rac1 de Ligação ao GTP/metabolismo , Proteína rhoA de Ligação ao GTP/antagonistas & inibidores , Proteína rhoA de Ligação ao GTP/metabolismo
6.
Angew Chem Int Ed Engl ; 53(3): 883-7, 2014 Jan 13.
Artigo em Inglês | MEDLINE | ID: mdl-24288253

RESUMO

In the search of molecules that could recognize sizeable areas of protein surfaces, a series of ten helical aromatic oligoamide foldamers was synthesized on solid phase. The foldamers comprise three to five monomers carrying various proteinogenic side chains, and exist as racemic mixtures of interconverting right-handed and left-handed helices. Functionalization of the foldamers by a nanomolar ligand of human carbonic anhydrase II (HCA) ensured that they would be held in close proximity to the protein surface. Foldamer-protein interactions were screened by circular dichroism (CD). One foldamer displayed intense CD bands indicating that a preferred helix handedness is induced upon interacting with the protein surface. The crystal structure of the complex between this foldamer and HCA could be resolved at 2.1 Å resolution and revealed a number of unanticipated protein-foldamer, foldamer-foldamer, and protein-protein interactions.


Assuntos
Amidas/química , Anidrase Carbônica II/química , Amidas/metabolismo , Sítios de Ligação , Anidrase Carbônica II/metabolismo , Inibidores da Anidrase Carbônica/química , Inibidores da Anidrase Carbônica/metabolismo , Dicroísmo Circular , Cristalografia por Raios X , Humanos , Simulação de Dinâmica Molecular , Ligação Proteica , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Ressonância de Plasmônio de Superfície
7.
J Am Chem Soc ; 135(12): 4884-92, 2013 Mar 27.
Artigo em Inglês | MEDLINE | ID: mdl-23445529

RESUMO

Aliphatic N,N'-linked oligoureas are peptidomimetic foldamers that adopt a well-defined helical secondary structure stabilized by a collection of remote three-center H-bonds closing 12- and 14-membered pseudorings. Delineating the rules that govern helix formation depending on the nature of constituent units is of practical utility if one aims to utilize this helical fold to place side chains in a given arrangement and elaborate functional helices. In this work, we tested whether the helix geometry is compatible with alternative substitution patterns. The central -NH-CH(R)-CH2-NH-CO- residue in a model oligourea pentamer sequence was replaced by guest units bearing various substitution patterns [e.g., -NH-CH2-CH2-NH-CO-, -NH-CH2-CH(R)-NH-CO-, and -NH-CH(R(1))-CH(R(2))-NH-CO-], levels of preorganization (cyclic vs acyclic residues), and stereochemistries, and the helix formation was systematically assessed. The extent of helix perturbation or stabilization was primarily monitored in solution by Fourier transform IR, NMR, and electronic circular dichroism spectroscopies. Our results indicate that although three new substitution patterns were accommodated in the 2.5-helix, the helical urea backbone in short oligomers is particularly sensitive to variations in the residue substitution pattern (position and stereochemistry). For example, the trans-1,2-diaminocyclohexane unit was experimentally found to break the helix nucleation, but the corresponding cis unit did not. Theoretical calculations helped to rationalize these results. The conformational preferences in this series of oligoureas were also studied at high resolution by X-ray structure analyses of a representative set of modified oligomers.


Assuntos
Peptidomiméticos/química , Ureia/análogos & derivados , Dicroísmo Circular , Cristalografia por Raios X , Cicloexilaminas/química , Modelos Moleculares , Conformação Molecular , Ressonância Magnética Nuclear Biomolecular , Estrutura Secundária de Proteína , Espectroscopia de Infravermelho com Transformada de Fourier
8.
Biochem J ; 443(2): 549-59, 2012 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-22273052

RESUMO

The human protein Pontin, which belongs to the AAA+ (ATPases associated with various cellular activities) family, is overexpressed in several cancers and its silencing in vitro leads to tumour cell growth arrest and apoptosis, making it a good target for cancer therapy. In particular, high levels of expression were found in hepatic tumours for which the therapeutic arsenal is rather limited. The three-dimensional structure of Pontin has been resolved previously, revealing a hexameric assembly with one ADP molecule co-crystallized in each subunit. Using Vina, DrugScore and Xscore, structure-based virtual screening of 2200 commercial molecules was conducted into the ATP-binding site formed by a dimer of Pontin in order to prioritize the best candidates. Complementary to the in silico screening, a versatile and sensitive colorimetric assay was set up to measure the disruption of the ATPase activity of Pontin. This assay allowed the determination of inhibition curves for more than 20 top-scoring compounds, resulting in the identification of four ligands presenting an inhibition constant in the micromolar concentration range. Three of them inhibited tumour cell proliferation. The association of virtual screening and experimental assay thus proved successful for the discovery of the first small-molecule inhibitors of Pontin.


Assuntos
Proteínas de Transporte/antagonistas & inibidores , DNA Helicases/antagonistas & inibidores , Domínios e Motivos de Interação entre Proteínas , Bibliotecas de Moléculas Pequenas/farmacologia , ATPases Associadas a Diversas Atividades Celulares , Linhagem Celular Tumoral , Proliferação de Células/efeitos dos fármacos , Ensaios Enzimáticos , Humanos , Modelos Moleculares
9.
Biochem J ; 441(1): 161-71, 2012 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-21864294

RESUMO

PTEN (phosphatase and tensin homologue deleted on chromosome ten) proteins are dual phosphatases with both protein and phosphoinositide phosphatase activity. They modulate signalling pathways controlling growth, metabolism and apoptosis in animals and are implied in several human diseases. In the present paper we describe a novel class of PTEN pro-teins in plants, termed PTEN2, which comprises the AtPTEN (Arabidopsis PTEN) 2a and AtPTEN2b proteins in Arabidopsis. Both display low in vitro tyrosine phosphatase activity. In addition, AtPTEN2a actively dephosphorylates in vitro the 3' phosphate group of PI3P (phosphatidylinositol 3-phosphate), PI(3,4)P2 (phosphatidylinositol 3,4-bisphosphate) and PI(3,5)P2 (phosphatidylinositol 3,5-bisphosphate). In contrast with animal PTENs, PI(3,4,5)P3 (phosphatidylinositol 3,4,5-trisphosphate) is a poor substrate. Site-directed mutagenesis of AtPTEN2a and molecular modelling of protein-phosphoinositide interactions indicated that substitutions at the PTEN2 core catalytic site of the Lys267 and Gly268 residues found in animals, which are critical for animal PTEN activity, by Met267 and Ala268 found in the eudicot PTEN2 are responsible for changes in substrate specificity. Remarkably, the AtPTEN2a protein also displays strong binding activity for PA (phosphatidic acid), a major lipid second messenger in plants. Promoter::GUS (ß-glucuronidase) fusion, transcript and protein analyses further showed the transcriptional regulation of the ubiquitously expressed AtPTEN2a and AtPTEN2b by salt and osmotic stress. The results of the present study suggest a function for this novel class of plant PTEN proteins as an effector of lipid signalling in plants.


Assuntos
Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Regulação da Expressão Gênica de Plantas/fisiologia , PTEN Fosfo-Hidrolase/metabolismo , Ácidos Fosfatídicos/metabolismo , Monoéster Fosfórico Hidrolases/metabolismo , Arabidopsis/genética , Proteínas de Arabidopsis/genética , Escherichia coli/metabolismo , Modelos Moleculares , PTEN Fosfo-Hidrolase/genética , Monoéster Fosfórico Hidrolases/genética , Filogenia , Ligação Proteica , Conformação Proteica , Transdução de Sinais , Especificidade por Substrato
10.
Zootaxa ; 5270(2): 231-261, 2023 Apr 20.
Artigo em Inglês | MEDLINE | ID: mdl-37518166

RESUMO

Phalaena militta Stoll, [1781], currently in the combination Thyrgis militta, is transferred to the new combination Calodesma militta. Phalaena militta is the type species of Thyrgis Walker, 1854, and so Thyrgis is a junior synonym of Calodesma Hübner, [1820]. The reinstated genus Seileria Dognin, 1923 is the next available name for the genus previously known as Thyrgis, and the remaining eight species and their subspecies currently in Thyrgis are transferred to new combinations as species of Seileria: S. angustifascia (Hering, 1925), S. basipunctata (Hering, 1926), S. constrictifascia (Dognin, 1919), S. flavonigra (Dognin, 1910), S. investigatorum (Toulgoët, 1988), S. marginata (Butler, 1875), S. meres (Druce, 1911), S. phlegon (Druce, 1885), S. phlegon ruscia (Druce, 1895), S. tenuifascia (Hering, 1930) and S. tenuifascia daguana (Hering, 1930). Eucyanoides Toulgoët, 1988, currently a synonym of Thyrgis, is made a new subjective synonym of Seileria. Based on DNA barcodes, we recognise three very similar, sexually dimorphic and in two cases polymorphic South American species of Calodesma with some phenotypes in common but very similar male genitalia: C. militta (BOLD:AAK1660), C. sp. cf. collaris (BOLD:ABZ2392) and C. pseudocollaris Cock new species (BOLD:AEI2170). Calodesma militta is widespread in South America, with two male morphs (collaris and dioptis) and two female morphs with variable markings (white and orange morphs). Centronia plorator Kaye, [1923] and Thyrgis lacryma Dognin, 1919 are variants of the white female morph and are new synonyms of Calodesma militta. A third female morph with red markings was not sequenced and could not be allocated to a species. Calodesma sp. cf. collaris (BOLD:ABZ2392) occurs in southern South America with both male morphs but only a white female morph. Calodesma pseudocollaris new species (BOLD:AEI2170) is only known from Trinidad, with one male morph (collaris) and the white female morph. Although more than ten morphs relating to this complex have been described as species, they cannot be synonymised without more data on distribution of the different species or DNA barcodes from the type specimens. Collated life history information indicates species of this group are split between Malpighiaceae feeders and Bromeliaceae feeders, but more work is needed to define these differences. The morphism patterns observed are discussed in terms of Müllerian mimicry and mimicry rings, and we suggest that in Trinidad (and elsewhere) there is a loose mimicry ring of diurnal black species with white spots or transparent patches on the wings which are most conspicuous and frequently observed when feeding on white Asteraceae flowers.


Assuntos
Mimetismo Biológico , Mariposas , Feminino , Masculino , Animais , Trinidad e Tobago , Código de Barras de DNA Taxonômico , Mariposas/genética
11.
J Am Chem Soc ; 134(27): 11282-8, 2012 Jul 11.
Artigo em Inglês | MEDLINE | ID: mdl-22690889

RESUMO

Helically folded molecular capsules based on oligoamide sequences of aromatic amino acids which are capable of binding tartaric acid in organic solvents with high affinity and diastereoselectivity have been synthesized, and their structures and binding properties investigated by (1)H NMR, X-ray crystallography, circular dichroism, and molecular modeling. We found that elongating the helices at their extremities by adding monomers remote from the tartaric binding site results in a strong increase of the overall helix stability, but it does not influence the host-guest complex stability. The effect of this elongation on the binding and release rates of the guest molecules follows an unexpected non-monotonous trend. Three independent observations (direct monitoring of exchange over time, 2D-EXSY NMR, and molecular modeling) concur and show that guest exchange rates tend to first increase upon increasing helix length and then decrease when helix length is increased further. This investigation thus reveals the complex effects of adding monomers in a helically folded sequence on a binding event that occurs at a remote site and sheds light on possible binding and release mechanisms.


Assuntos
Amidas/química , Aminoácidos Aromáticos/química , Tartaratos/química , Amidas/síntese química , Aminoácidos Aromáticos/síntese química , Sítios de Ligação , Cristalografia por Raios X , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Dobramento de Proteína , Estrutura Secundária de Proteína , Tartaratos/isolamento & purificação
12.
FASEB J ; 25(1): 132-43, 2011 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-20847230

RESUMO

The cochaperone cysteine-string protein (Csp) is located on vesicles and participates in the control of neurotransmission and hormone exocytosis. Csp contains several domains, and our previous work demonstrated the requirement of the Csp linker domain in regulated exocytosis of insulin in rodent pancreatic ß cells. We now address the molecular details to gain insight into the sequence of events during exocytosis. According to pulldown experiments and in vitro binding assays, Cspα interacts indirectly with SNAP-25 and directly with the calcium sensor synaptotagmin 9 (Syt9), which could be an intermediate between the chaperone and the t-SNARE. The C(2)A calcium binding domain of Syt9 and the linker domain of Cspα constituted the minimal interacting module. FRET-FLIM experiments confirmed the interaction between Syt9 and Cspα. Moreover, the point mutation E93V in the linker domain of Cspα significantly reduced the interaction between the two proteins. Molecular modeling revealed that this point mutation abolished a charged prominence on the surface of Cspα required for interaction. Strikingly, free calcium in the physiological low micromolar range enhanced the interaction between Syt9 and the linker domain of Cspα in vitro. These data indicate that Cspα interacts with Syt9, and such a complex may be relevant in the calcium-mediated control of a late stage of exocytosis by triggering the specific recruitment of a folding catalyst at the fusion point.


Assuntos
Exocitose , Proteínas de Choque Térmico HSP40/metabolismo , Células Secretoras de Insulina/metabolismo , Proteínas de Membrana/metabolismo , Sinaptotagminas/metabolismo , Animais , Sítios de Ligação/genética , Far-Western Blotting , Linhagem Celular Tumoral , Transferência Ressonante de Energia de Fluorescência , Ácido Glutâmico/química , Ácido Glutâmico/genética , Ácido Glutâmico/metabolismo , Glutationa Transferase/genética , Glutationa Transferase/metabolismo , Proteínas de Choque Térmico HSP40/química , Proteínas de Choque Térmico HSP40/genética , Proteínas de Membrana/química , Proteínas de Membrana/genética , Camundongos , Modelos Moleculares , Mutação de Sentido Incorreto , Ligação Proteica , Estrutura Terciária de Proteína , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Proteína 25 Associada a Sinaptossoma/genética , Proteína 25 Associada a Sinaptossoma/metabolismo , Sinaptotagminas/genética
13.
PLoS Biol ; 7(1): e17, 2009 Jan 20.
Artigo em Inglês | MEDLINE | ID: mdl-19166270

RESUMO

Protein kinase B (PKB/Akt) belongs to the AGC superfamily of related serine/threonine protein kinases. It is a key regulator downstream of various growth factors and hormones and is involved in malignant transformation and chemo-resistance. Full-length PKB protein has not been crystallised, thus studying the molecular mechanisms that are involved in its regulation in relation to its structure have not been simple. Recently, the dynamics between the inactive and active conformer at the molecular level have been described. The maintenance of PKB's inactive state via the interaction of the PH and kinase domains prevents its activation loop to be phosphorylated by its upstream activator, phosphoinositide-dependent protein kinase-1 (PDK1). By using a multidisciplinary approach including molecular modelling, classical biochemical assays, and Förster resonance energy transfer (FRET)/two-photon fluorescence lifetime imaging microscopy (FLIM), a detailed model depicting the interaction between the different domains of PKB in its inactive conformation was demonstrated. These findings in turn clarified the molecular mechanism of PKB inhibition by AKT inhibitor VIII (a specific allosteric inhibitor) and illustrated at the molecular level its selectivity towards different PKB isoforms. Furthermore, these findings allude to the possible function of the C-terminus in sustaining the inactive conformer of PKB. This study presents essential insights into the quaternary structure of PKB in its inactive conformation. An understanding of PKB structure in relation to its function is critical for elucidating its mode of activation and discovering how to modulate its activity. The molecular mechanism of inhibition of PKB activation by the specific drug AKT inhibitor VIII has critical implications for determining the mechanism of inhibition of other allosteric inhibitors and for opening up opportunities for the design of new generations of modulator drugs.


Assuntos
Inibidores de Proteínas Quinases/farmacologia , Proteínas Proto-Oncogênicas c-akt/química , Proteínas Quinases Dependentes de 3-Fosfoinositídeo , Regulação Alostérica/fisiologia , Animais , Sítios de Ligação/efeitos dos fármacos , Regulação da Expressão Gênica , Camundongos , Mutagênese , Fosforilação , Conformação Proteica/efeitos dos fármacos , Proteínas Serina-Treonina Quinases/metabolismo , Proteínas Proto-Oncogênicas c-akt/antagonistas & inibidores , Relação Estrutura-Atividade
14.
Langmuir ; 28(50): 17410-8, 2012 Dec 18.
Artigo em Inglês | MEDLINE | ID: mdl-23173977

RESUMO

While the definition of tannins has been historically associated with its propensity to bind proteins in a nonspecific way, it is now admitted that specific interaction also occurs. The case of the astringency perception is a good example to illustrate this phenomenon: astringency is commonly described as a tactile sensation induced by the precipitation of a complex composed of proline-rich proteins present in the human saliva and tannins present in beverages such as tea or red wines. In the present work, the interactions between a human saliva protein segment and three different procyanidins (B1, B3, and C2) were investigated at the atomic level by NMR and molecular dynamics. The data provided evidence for (i) an increase in affinity compared to shortest human saliva peptides, which is accounted for by protein "wraping around" the tannin, (ii) a specificity in the interaction below tannin critical micelle concentration (CMC) of ca. 10 mM, with an affinity scale such that C2 > B1 > B3, and (iii) a nonspecific binding above tannin CMC that conducts irremediably to the precipitation of the tannins/protein complex. Such physicochemical findings describe in accurate terms saliva protein-tannin interactions and provide support for a more subtle description by oenologists of wine astringency perception in the mouth.


Assuntos
Biflavonoides/química , Catequina/química , Simulação de Dinâmica Molecular , Proantocianidinas/química , Proteínas Salivares Ricas em Prolina/química , Taninos/química , Biflavonoides/metabolismo , Catequina/metabolismo , Humanos , Micelas , Ressonância Magnética Nuclear Biomolecular , Proantocianidinas/metabolismo , Ligação Proteica , Estrutura Terciária de Proteína , Proteínas Salivares Ricas em Prolina/metabolismo , Taninos/metabolismo
15.
Langmuir ; 28(19): 7452-60, 2012 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-22482866

RESUMO

Nucleolipids are currently under investigation as vectors for oligonucleotides (ON) delivery thanks to their supramolecular organization properties and their ability to develop specific interactions (i.e., stacking and potential Watson and Crick hydrogen bonds) for lipoplexes formation. To investigate the factors that govern the interaction events at a molecular level and optimize nucleolipid chemical structures, physicochemical experiments (tensiometry, AFM, BAM, and ellipsometry) combined with molecular dynamics simulation were performed on a series of zwitterionic nucleolipids (PUPC, DPUPC, PAPC) featuring a phosphocholine chain (PC). After construction and initial equilibration, simulations of pure nucleolipid bilayers were run for 100 ns at constant temperature and pressure, and their properties were compared to experimental data and to natural dipalmitoylphosphatidylcholine (DPPC) bilayers. Nucleolipid-based membranes are significantly more ordered and compact than DPPC bilayers mainly due to the presence of many intermolecular interactions between nucleoside polar heads. The hydrophilic phosphocholine moieties connected to the 5' hydroxyls are located above the bilayers, penalizing nucleic bases accessibility for further interactions with ON. Hence, a neutral nucleolipid (PUOH) without hydrophilic phosphocholine was inserted in the membranes. Simulations and experimental analysis of nucleolipid membranes in interaction with a single strand RNA structure indicate that PUOH interacts with ON in the subphase. This study demonstrates that molecular modeling can be used to determine the interactions between oligonucleotide and nucleolipids.


Assuntos
Lipídeos/química , Modelos Químicos , 1,2-Dipalmitoilfosfatidilcolina/química , Temperatura
16.
Zootaxa ; 5222(2): 101-132, 2022 Dec 19.
Artigo em Inglês | MEDLINE | ID: mdl-37044536

RESUMO

The following new species are described: Calonotos flemingi new species from Trinidad; Valvaminor jacerda new species from Trinidad and Venezuela. The following species are made subspecies new status: Calonotos tripunctata Druce, 1898 of C. aterrima (Sepp, 1847); Calonotos craneae Fleming, 1957 of Calonotos helymus (Cramer, 1775). The following subspecies is raised to species new status: Cosmosoma bolivarensis Klages, 1906 (formerly Cosmosoma achemon var. bolivarensis). The following are new combinations: Myrmecopsis kenedyae (Fleming, 1957) (Euchromiina) (formerly Pseudosphex kenedyae Ctenuchina); Valvaminor endoleuca (Druce, 1905) (formerly Mesothen endoleuca); Xanthyda beebei (Fleming, 1957) (formerly Pheia beebei); Eucerioides obliquifascia (Rothschild, 1912) (formerly Eucereon obliquifascia); Uranophora andrei (Rothschild, 1912) (formerly Ctenucha andrei). A lectotype is designated for Calonotos tiburtus trinidadensis Strand, 1915, which is a new synonym of Calonotos aterrima (Sepp, 1847). Aethria jacksoni Kaye 1925 is a new synonym of Aethria aner Hampson 1905.


Assuntos
Mariposas , Animais , Mariposas/classificação , Trinidad e Tobago
17.
FASEB J ; 24(11): 4281-90, 2010 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-20605948

RESUMO

In organoleptic science, the association of tannins to saliva proteins leads to the poorly understood phenomenon of astringency. To decipher this interaction at molecular and colloidal levels, the binding of 4 procyanidin dimers (B1-4) and 1 trimer (C2) to a human saliva proline-rich peptide, IB7(14), was studied. Interactions have been characterized by measuring dissociation constants, sizes of complexes, number, and nature of binding sites using NMR (chemical shift variations, diffusion-ordered spectroscopy, and saturation transfer diffusion). The binding sites were identified using molecular mechanics, and the hydrophilic/hydrophobic nature of the interactions was resolved by calculating the molecular lipophilicity potential within the complexes. The following comprehensive scheme can be proposed: 1) below the tannin critical micelle concentration (CMC), interaction is specific, and the procyanidin anchorage always occurs on the same three IB7(14) sites. The tannin 3-dimensional structure plays a key role in the binding force and in the tannin's ability to act as a bidentate ligand: tannins adopting an extended conformation exhibit higher affinity toward protein and initiate the formation of a network. 2) Above the CMC, after the first specific hydrophilic interaction has taken place, a random hydrophobic stacking occurs between tannins and proteins. The whole process is discussed in the general frame of wine tannins eliciting astringency.


Assuntos
Adstringentes , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Proteínas e Peptídeos Salivares/metabolismo , Taninos/química , Taninos/metabolismo , Vinho , Antioxidantes/química , Antioxidantes/metabolismo , Biflavonoides/química , Biflavonoides/metabolismo , Catequina/química , Catequina/metabolismo , Coloides/química , Dimerização , Humanos , Simulação de Dinâmica Molecular , Estrutura Molecular , Proantocianidinas/química , Proantocianidinas/metabolismo , Ligação Proteica , Proteínas e Peptídeos Salivares/química
18.
Langmuir ; 27(21): 13122-9, 2011 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-21877746

RESUMO

Association of procyanidins with enzymes has drawn attention over the past few years. This work aimed to bring insights on interaction of the protease trypsin with the procyanidin dimer (B3). This interaction was characterized by fluorescence quenching, saturation transfer difference (STD) NMR, molecular modeling, and through an enzymatic inhibition assay. Further studies were conducted regarding the influence of pectin on the binding process. A general overview of the binding process may be outlined as follows: a) at low procyanidin concentrations (below the critical micellar concentration-(CMC)) a specific interaction probably driven by hydrogen bonds between the protein backbone and the procyanidin occurs and is associated with the reduction of both enzyme activity and fluorescence; b) at high procyanidin concentration (above the CMC) the interaction becomes nonspecific. This variation in both nature and extent of the interaction with the variation of procyanidin concentration shows how tannin self-association may affect the interaction between tannins and proteins. It was also shown that the mechanism through which pectin affects the interaction between procyanidin B3 and trypsin is of a competitive type.


Assuntos
Biflavonoides/metabolismo , Biflavonoides/farmacologia , Catequina/metabolismo , Catequina/farmacologia , Proantocianidinas/metabolismo , Proantocianidinas/farmacologia , Inibidores da Tripsina/metabolismo , Inibidores da Tripsina/farmacologia , Tripsina/metabolismo , Animais , Espectroscopia de Ressonância Magnética , Micelas , Simulação de Dinâmica Molecular , Pectinas/metabolismo , Ligação Proteica , Conformação Proteica , Espectrometria de Fluorescência , Tripsina/química
19.
Eur Biophys J ; 40(5): 641-9, 2011 May.
Artigo em Inglês | MEDLINE | ID: mdl-21264465

RESUMO

Annexin A5 (AnxA5) binds to negatively charged phospholipid membranes in a Ca(2+) dependent manner. Several studies already demonstrate that Mg(2+) ions cannot induce the binding. In this paper, quartz crystal microbalance with dissipation monitoring (QCM-D), Brewster angle microscopy (BAM), polarization modulation infrared reflection absorption spectroscopy (PMIRRAS) and molecular dynamics (MD) were performed to elucidate the high specificity of Ca(2+) versus Mg(2+) on AnxA5 binding to membrane models. In the presence of Ca(2+), AnxA5 showed a strong interaction with lipids, the protein is adsorbed mainly in α-helix under the DMPS monolayer, with an orientation of the α-helices axes slightly tilted with respect to the normal of the phospholipid monolayer as revealed by PMIRRAS. The Ca(2+) ions interact strongly with the phosphate group of the phospholipid monolayer. In the presence of Mg(2+), instead of Ca(2+), no interaction of AnxA5 with lipids was detected. Molecular dynamics simulations allow us to explain the high specificity of calcium. Ca(2+) ions are well exposed and surrounded by labile water molecules at the surface of the protein, which then favour their binding to the phosphate group of the membrane, explaining their specificity. To the contrary, Mg(2+) ions are embedded in the protein structure, with a smaller number of water molecules strongly bound. We conclude that the embedded Mg(2+) ions inside the AnxA5 structure are not able to link the protein to the phosphate group of the phospholipids for this reason.


Assuntos
Anexina A5/química , Anexina A5/metabolismo , Cálcio/farmacologia , Membrana Celular/metabolismo , Magnésio/farmacologia , Adsorção , Ar , Membrana Celular/química , Bicamadas Lipídicas/química , Bicamadas Lipídicas/metabolismo , Simulação de Dinâmica Molecular , Ligação Proteica/efeitos dos fármacos , Conformação Proteica , Unitiol/química , Unitiol/metabolismo , Água/química
20.
Planta Med ; 77(11): 1116-22, 2011 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-21412697

RESUMO

Astringency is a sensation in the mouth used in judging the quality of red wine. The rough, dry, and puckering sensation called astringency is the result of an interaction between tannins and saliva proteins, mainly proline-rich proteins (PRP), which leads to the formation and precipitation of a complex. A dry and rough sensation is then perceived in the mouth. To get an insight into astringency at the molecular level we investigated: (i) An efficient and iterative method for 4-8 procyanidin synthesis, which gives rise to all possible 4-8 procyanidins up to the tetramer with total control of degree of oligomerization and stereochemistry. (ii) The 3D-structural preferences, which take into account their internal movements, using 2D NMR and molecular modeling. (iii) The self-association process in water or hydroalcoholic solutions using diffusion NMR spectroscopy that gives the active proportion of tannins able to fix proteins. (iv) A comprehensive description of the PRP-procyanidin complex formation to get information about stoichiometry, binding site localization, and affinity constants for different procyanidins. The data collected suggest that the interactions are controlled by both procyanidin conformational and colloidal state preferences. All these results provide new insights into the molecular interpretation of tannin astringency.


Assuntos
Adstringentes/química , Coloides , Conformação Molecular , Proantocianidinas/síntese química , Proteínas Salivares Ricas em Prolina/síntese química , Sítios de Ligação , Difusão , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Polimerização , Estereoisomerismo , Vinho/análise
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