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1.
Opt Express ; 32(6): 8506-8519, 2024 Mar 11.
Artigo em Inglês | MEDLINE | ID: mdl-38571108

RESUMO

In this paper, a 1 × 2 photonic switch is designed based on a silicon-on-insulator (SOI) platform combined with the phase change material (PCM), Sb2S3, assisted by the direct binary search (DBS) algorithm. The designed photonic switch exhibits an impressive operating bandwidth ranging from 1450 to 1650 nm. The device has an insertion loss (IL) from 0.44 dB to 0.70 dB (of less than 0.7 dB) and cross talk (CT) from -26 dB to -20 dB (of less than -20 dB) over an operating bandwidth of 200 nm, especially an IL of 0.52 dB and CT of -24 dB at 1550 nm. Notably, the device is highly compact, with footprints of merely 3 × 4 µm2. Furthermore, we have extended the device's functionality for multifunctional operation in the C-band that can serve as both a 1 × 2 photonic switch and a 3 dB photonic power splitter. In the photonic switch mode, the device demonstrates an IL of 0.7 dB and a CT of -13.5 dB. In addition, when operating as a 3 dB photonic power splitter, the IL is less than 0.5 dB.

2.
Mol Ther ; 27(5): 999-1016, 2019 05 08.
Artigo em Inglês | MEDLINE | ID: mdl-30852139

RESUMO

Excessive or inappropriate inflammatory responses can cause serious and even fatal diseases. The CCAAT/enhancer-binding protein alpha (CEBPA) gene encodes C/EBPα, a transcription factor that plays a fundamental role in controlling maturation of the myeloid lineage and is also expressed during the late phase of inflammatory responses when signs of inflammation are decreasing. MTL-CEBPA, a small activating RNA targeting for upregulation of C/EBPα, is currently being evaluated in a phase 1b trial for treatment of hepatocellular carcinoma. After dosing, subjects had reduced levels of pro-inflammatory cytokines, and we therefore hypothesized that MTL-CEBPA has anti-inflammatory potential. The current study was conducted to determine the effects of C/EBPα saRNA - CEBPA-51 - on inflammation in vitro and in vivo after endotoxin challenge. CEBPA-51 led to increased expression of the C/EBPα gene and inhibition of pro-inflammatory cytokines in THP-1 monocytes previously stimulated by E. coli-derived lipopolysaccharide (LPS). Treatment with MTL-CEBPA in an LPS-challenged humanized mouse model upregulated C/EBPα mRNA, increased neutrophils, and attenuated production of several key pro-inflammatory cytokines, including TNF-α, IL-6, IL-1ß, and IFN-γ. In addition, a Luminex analysis of mouse serum revealed that MTL-CEBPA reduced pro-inflammatory cytokines and increased the anti-inflammatory cytokine IL-10. Collectively, the data support further investigation of MTL-CEBPA in acute and chronic inflammatory diseases where this mechanism has pathogenic importance.


Assuntos
Proteínas Estimuladoras de Ligação a CCAAT/genética , Inflamação/terapia , Monócitos/efeitos dos fármacos , RNA/genética , Animais , Anti-Inflamatórios/farmacologia , Proteínas Estimuladoras de Ligação a CCAAT/antagonistas & inibidores , Regulação da Expressão Gênica/efeitos dos fármacos , Humanos , Inflamação/induzido quimicamente , Inflamação/genética , Inflamação/patologia , Interleucina-10/genética , Interleucina-1beta/genética , Lipopolissacarídeos/toxicidade , Camundongos , Monócitos/metabolismo , RNA/farmacologia , RNA Mensageiro/genética , Fator de Necrose Tumoral alfa/genética
3.
Nucleic Acids Res ; 46(1): e6, 2018 01 09.
Artigo em Inglês | MEDLINE | ID: mdl-29077949

RESUMO

Gene therapy by engineering patient's own blood cells to confer HIV resistance can potentially lead to a functional cure for AIDS. Toward this goal, we have previously developed an anti-HIV lentivirus vector that deploys a combination of shRNA, ribozyme and RNA decoy. To further improve this therapeutic vector against viral escape, we sought an additional reagent to target HIV integrase. Here, we report the development of a new strategy for selection and expression of aptamer for gene therapy. We developed a SELEX protocol (multi-tag SELEX) for selecting RNA aptamers against proteins with low solubility or stability, such as integrase. More importantly, we expressed these aptamers in vivo by incorporating them in the terminal loop of shRNAs. This novel strategy allowed efficient expression of the shRNA-aptamer fusions that targeted RNAs and proteins simultaneously. Expressed shRNA-aptamer fusions targeting HIV integrase or reverse transcriptase inhibited HIV replication in cell cultures. Viral inhibition was further enhanced by combining an anti-integrase aptamer with an anti-HIV Tat-Rev shRNA. This construct exhibited efficacy comparable to that of integrase inhibitor Raltegravir. Our strategy for the selection and expression of RNA aptamers can potentially extend to other gene therapy applications.


Assuntos
Aptâmeros de Nucleotídeos/genética , Integrase de HIV/genética , HIV-1/genética , RNA Interferente Pequeno/genética , DNA Polimerase Dirigida por RNA/genética , Síndrome da Imunodeficiência Adquirida/genética , Síndrome da Imunodeficiência Adquirida/terapia , Síndrome da Imunodeficiência Adquirida/virologia , Aptâmeros de Nucleotídeos/química , Aptâmeros de Nucleotídeos/metabolismo , Sequência de Bases , Regulação Viral da Expressão Gênica , Terapia Genética/métodos , Infecções por HIV/genética , Infecções por HIV/terapia , Infecções por HIV/virologia , HIV-1/metabolismo , Humanos , Conformação de Ácido Nucleico , Ligação Proteica , RNA Interferente Pequeno/química , RNA Interferente Pequeno/metabolismo , RNA Viral/química , RNA Viral/genética , RNA Viral/metabolismo , Replicação Viral/genética
4.
J Virol ; 92(7)2018 04 01.
Artigo em Inglês | MEDLINE | ID: mdl-29343582

RESUMO

Although current combinatorial antiretroviral therapy (cART) is therapeutically effective in the majority of HIV patients, interruption of therapy can cause a rapid rebound in viremia, demonstrating the existence of a stable reservoir of latently infected cells. HIV latency is therefore considered a primary barrier to HIV eradication. Identifying, quantifying, and purging the HIV reservoir is crucial to effectively curing patients and relieving them from the lifelong requirement for therapy. Latently infected transformed cell models have been used to investigate HIV latency; however, these models cannot accurately represent the quiescent cellular environment of primary latently infected cells in vivo For this reason, in vivo humanized murine models have been developed for screening antiviral agents, identifying latently infected T cells, and establishing treatment approaches for HIV research. Such models include humanized bone marrow/liver/thymus mice and SCID-hu-thy/liv mice, which are repopulated with human immune cells and implanted human tissues through laborious surgical manipulation. However, no one has utilized the human hematopoietic stem cell-engrafted NOD/SCID/IL2rγnull (NSG) model (hu-NSG) for this purpose. Therefore, in the present study, we used the HIV-infected hu-NSG mouse to recapitulate the key aspects of HIV infection and pathogenesis in vivo Moreover, we evaluated the ability of HIV-infected human cells isolated from HIV-infected hu-NSG mice on suppressive cART to act as a latent HIV reservoir. Our results demonstrate that the hu-NSG model is an effective surgery-free in vivo system in which to efficiently evaluate HIV replication, antiretroviral therapy, latency and persistence, and eradication interventions.IMPORTANCE HIV can establish a stably integrated, nonproductive state of infection at the level of individual cells, known as HIV latency, which is considered a primary barrier to curing HIV. A complete understanding of the establishment and role of HIV latency in vivo would greatly enhance attempts to develop novel HIV purging strategies. An ideal animal model for this purpose should be easy to work with, should have a shortened disease course so that efficacy testing can be completed in a reasonable time, and should have immune correlates that are easily translatable to humans. We therefore describe a novel application of the hematopoietic stem cell-transplanted humanized NSG model for dynamically testing antiretroviral treatment, supporting HIV infection, establishing HIV latency in vivo The hu-NSG model could be a facile alternative to humanized bone marrow/liver/thymus or SCID-hu-thy/liv mice in which laborious surgical manipulation and time-consuming human cell reconstitution is required.


Assuntos
Antirretrovirais/farmacologia , Modelos Animais de Doenças , Infecções por HIV/tratamento farmacológico , HIV-1/fisiologia , Latência Viral/efeitos dos fármacos , Replicação Viral/efeitos dos fármacos , Administração Oral , Animais , Infecções por HIV/metabolismo , Infecções por HIV/patologia , Camundongos , Camundongos Endogâmicos NOD , Camundongos SCID
5.
RNA ; 20(12): 1916-28, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25344398

RESUMO

Long noncoding RNAs (lncRNAs) are known to regulate neighboring protein-coding genes by directing chromatin remodeling complexes, imprinting, and X-chromosome inactivation. In this study, we explore the function of lncRNAs in small RNA-triggered transcriptional gene activation (TGA), a process in which microRNAs (miRNAs) or small interfering RNAs (siRNAs) associated with Argonaute (Ago) proteins induce chromatin remodeling and gene activation at promoters with sequence complementarity. We designed a model system with different lncRNA and chromatin environments to elucidate the molecular mechanisms required for mammalian TGA. Using RNA-fluorescence in situ hybridization (FISH) and rapid amplification of cDNA ends (RACE)-PCR, we demonstrated that small RNA-triggered TGA occurs at sites where antisense lncRNAs are transcribed through the reporter gene and promoter. Small RNA-induced TGA coincided with the enrichment of Ago2 at the promoter region, but Ago2-mediated cleavage of antisense lncRNAs was not observed. Moreover, we examined the allele-specific effects of lncRNAs through a Cre-induced inversion of a poly(A) sequence that was designed to block the transcription of antisense lncRNAs through the reporter gene region in an inducible and reversible manner. Termination of nascent antisense lncRNAs abrogated gene activation triggered by small RNAs, and only allele-specific cis-acting antisense lncRNAs, but not trans-acting lncRNAs, were capable of rescuing TGA. Hence, this model revealed that antisense lncRNAs can mediate TGA in cis and not in trans, serving as a molecular scaffold for a small RNA-Ago2 complex and chromatin remodeling.


Assuntos
Proteínas Argonautas/genética , RNA Antissenso/genética , RNA Longo não Codificante/genética , Ativação Transcricional/genética , Animais , Montagem e Desmontagem da Cromatina , Células HeLa , Humanos , Hibridização in Situ Fluorescente , Complexos Multiproteicos/genética , Regiões Promotoras Genéticas , RNA Interferente Pequeno
6.
Mol Ther ; 21(1): 192-200, 2013 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-23164935

RESUMO

One of the most formidable impediments to clinical translation of RNA interference (RNAi) is safe and effective delivery of the siRNAs to the desired target tissue at therapeutic doses. We previously described in vivo cell type-specific delivery of anti-HIV small-interfering RNAs (siRNAs) through covalent conjugation to an anti-gp120 aptamer. In order to improve the utility of aptamers as siRNA delivery vehicles, we chemically synthesized the gp120 aptamer with a 3' 7-carbon linker (7C3), which in turn is attached to a 16-nucleotide 2' OMe/2' Fl GC-rich bridge sequence. This bridge facilitates the noncovalent binding and interchange of various siRNAs with the same aptamer. We show here that this aptamer-bridge-construct complexed with three different Dicer substrate siRNAs (DsiRNAs) results in effective delivery of the cocktail of DsiRNAs in vivo, resulting in knockdown of target mRNAs and potent inhibition of HIV-1 replication. Following cessation of the aptamer-siRNA cocktail treatment, HIV levels rebounded facilitating a follow-up treatment with the aptamer cocktail of DsiRNAs. This follow-up injection resulted in complete suppression of HIV-1 viral loads that extended several weeks beyond the final injection. Collectively, these data demonstrate a facile, targeted approach for combinatorial delivery of antiviral and host DsiRNAs for HIV-1 therapy in vivo.


Assuntos
Aptâmeros de Nucleotídeos/genética , HIV-1/genética , RNA Interferente Pequeno/genética , Animais , Sequência de Bases , Linfócitos T CD4-Positivos/imunologia , Proteína gp120 do Envelope de HIV/genética , Depleção Linfocítica , Camundongos , Camundongos Knockout
7.
Nucleic Acids Res ; 40(5): 2181-96, 2012 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-22080513

RESUMO

Using microRNA array analyses of in vitro HIV-1-infected CD4(+) cells, we find that several host microRNAs are significantly up- or downregulated around the time HIV-1 infection peaks in vitro. While microRNA-223 levels were significantly enriched in HIV-1-infected CD4(+)CD8(-) PBMCs, microRNA-29a/b, microRNA-155 and microRNA-21 levels were significantly reduced. Based on the potential for microRNA binding sites in a conserved sequence of the Nef-3'-LTR, several host microRNAs potentially could affect HIV-1 gene expression. Among those microRNAs, the microRNA-29 family has seed complementarity in the HIV-1 3'-UTR, but the potential suppressive effect of microRNA-29 on HIV-1 is severely blocked by the secondary structure of the target region. Our data support a possible regulatory circuit at the peak of HIV-1 replication which involves downregulation of microRNA-29, expression of Nef, the apoptosis of host CD4 cells and upregulation of microRNA-223.


Assuntos
Linfócitos T CD4-Positivos/virologia , Regulação da Expressão Gênica , Repetição Terminal Longa de HIV , HIV-1/genética , MicroRNAs/metabolismo , Sítios de Ligação , Linfócitos T CD4-Positivos/metabolismo , Linhagem Celular , Perfilação da Expressão Gênica , Humanos , MicroRNAs/química , Interferência de RNA , Produtos do Gene nef do Vírus da Imunodeficiência Humana/genética
8.
Angew Chem Int Ed Engl ; 53(44): 11822-7, 2014 Oct 27.
Artigo em Inglês | MEDLINE | ID: mdl-25219970

RESUMO

siRNA delivery remains a major challenge in RNAi-based therapy. Here, we report for the first time that an amphiphilic dendrimer is able to self-assemble into adaptive supramolecular assemblies upon interaction with siRNA, and effectively delivers siRNAs to various cell lines, including human primary and stem cells, thereby outperforming the currently available nonviral vectors. In addition, this amphiphilic dendrimer is able to harness the advantageous features of both polymer and lipid vectors and hence promotes effective siRNA delivery. Our study demonstrates for the first time that dendrimer-based adaptive supramolecular assemblies represent novel and versatile means for functional siRNA delivery, heralding a new age of dendrimer-based self-assembled drug delivery in biomedical applications.


Assuntos
Dendrímeros/química , Inativação Gênica/imunologia , RNA Interferente Pequeno/imunologia , Humanos
9.
Pathol Res Pract ; 255: 155220, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-38432050

RESUMO

BACKGROUND: This study investigates the role of IGFBP3-mediated m6A modification in regulating the miR-23a-3p/SMAD5 axis and its impact on fracture healing, aiming to provide insights into potential therapeutic targets. METHODS: Utilizing fracture-related datasets, we identified m6A modification-related mRNA and predicted miR-23a-3p as a regulator of SMAD5. We established a mouse fracture healing model and conducted experiments, including Micro-CT, RT-qPCR, Alizarin Red staining, and Alkaline phosphatase (ALP) staining, to assess gene expression and osteogenic differentiation. RESULTS: IGFBP3 emerged as a crucial player in fracture healing, stabilizing miR-23a-3p through m6A modification, leading to SMAD5 downregulation. This, in turn, inhibited osteogenic differentiation and delayed fracture healing. Inhibition of IGFBP3 partially reversed through SMAD5 inhibition, restoring osteogenic differentiation and fracture healing in vivo. CONCLUSION: The IGFBP3/miR-23a-3p/SMAD5 axis plays a pivotal role in fracture healing, highlighting the relevance of m6A modification. IGFBP3's role in stabilizing miR-23a-3p expression through m6A modification offers a potential therapeutic target for enhancing fracture healing outcomes.


Assuntos
Adenina , Consolidação da Fratura , Proteína 3 de Ligação a Fator de Crescimento Semelhante à Insulina , Animais , Camundongos , Adenina/análogos & derivados , Diferenciação Celular , Modelos Animais de Doenças , Regulação para Baixo , MicroRNAs/genética , MicroRNAs/metabolismo , Osteogênese/fisiologia , Proteína 3 de Ligação a Fator de Crescimento Semelhante à Insulina/metabolismo
10.
Biol Blood Marrow Transplant ; 19(3): 393-7, 2013 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-23089564

RESUMO

Hematopoietic cell transplantation (HCT) using CCR5-Δ32/Δ32 stem cells from an adult donor has resulted in the only known cure of human immunodeficiency virus (HIV) infection. However, it is not feasible to repeat this procedure except rarely because of the low incidence of the CCR5-Δ32 allele, the availability of only a small number of potential donors for most patients, and the need for a very close human leukocyte antigen (HLA) match between adult donors and recipients. In contrast, cord blood (CB) transplantations require significantly less stringent HLA matching. Therefore, our hypothesis is that cure of HIV infections by HCT can be accomplished much more readily using umbilical CB stem cells obtained from a modestly sized inventory of cryopreserved CCR5-Δ32/Δ32 CB units. To test this hypothesis, we developed a screening program for CB units and are developing an inventory of CCR5-Δ32/Δ32 cryopreserved units available for HCT. Three hundred such units are projected to provide for white pediatric patients a 73.6% probability of finding an adequately HLA matched unit with a cell dose of ≥2.5 × 10(7) total nucleated cells (TNCs)/kg and a 27.9% probability for white adults. With a cell dose of ≥1 × 10(7) TNCs/kg, the corresponding projected probabilities are 85.6% and 82.1%. The projected probabilities are lower for ethnic minorities. Impetus for using CB HCT was provided by a transplantation of an adult with acute myelogenous leukemia who was not HIV infected. The HCT was performed with a CCR5-Δ32/Δ32 CB unit, and posttransplantation in vitro studies indicated that the patient's peripheral blood mononuclear cells were resistant to HIV infection.


Assuntos
Transplante de Células-Tronco de Sangue do Cordão Umbilical , Leucemia Mieloide Aguda/terapia , Leucócitos Mononucleares/imunologia , Receptores CCR5/genética , Deleção de Sequência , Adulto , Bancos de Sangue , Células Cultivadas , Criança , Criopreservação , Infecções por HIV/imunologia , Infecções por HIV/patologia , Infecções por HIV/terapia , Infecções por HIV/virologia , Antígenos HLA/genética , Antígenos HLA/imunologia , Teste de Histocompatibilidade , Humanos , Leucemia Mieloide Aguda/imunologia , Leucemia Mieloide Aguda/patologia , Leucócitos Mononucleares/citologia , Leucócitos Mononucleares/virologia , Probabilidade , Receptores CCR5/imunologia , Quimeras de Transplante/imunologia , Doadores não Relacionados , População Branca
11.
Nanomaterials (Basel) ; 13(18)2023 Sep 08.
Artigo em Inglês | MEDLINE | ID: mdl-37764544

RESUMO

The on-chip nano-integration of large-scale optical phased arrays (OPAs) is a development trend. However, the current scale of integrated OPAs is not large because of the limitations imposed by the lateral dimensions of beam-splitting structures. Here, we propose an ultra-compact and broadband OPA beam-splitting scheme with a nano-inverse design. We employed a staged design to obtain a T-branch with a wavelength bandwidth of 500 nm (1300-1800 nm) and an insertion loss of -0.2 dB. Owing to the high scalability and width-preserving characteristics, the cascaded T-branch configuration can significantly reduce the lateral dimensions of an OPA, offering a potential solution for the on-chip integration of a large-scale OPA. Based on three-dimensional finite-difference time-domain (3D FDTD) simulations, we demonstrated a 1 × 16 OPA beam-splitter structure composed entirely of inverse-designed elements with a lateral dimension of only 27.3 µm. Additionally, based on the constructed grating couplers, we simulated the range of the diffraction angle θ for the OPA, which varied by 0.6°-41.6° within the wavelength range of 1370-1600 nm.

12.
Mol Ther ; 19(12): 2228-38, 2011 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-21952167

RESUMO

We evaluated the in vivo efficacy of structurally flexible, cationic PAMAM dendrimers as a small interfering RNA (siRNA) delivery system in a Rag2(-)/-γc-/- (RAG-hu) humanized mouse model for HIV-1 infection. HIV-infected humanized Rag2-/-γc-/- mice (RAG-hu) were injected intravenously (i.v.) with dendrimer-siRNA nanoparticles consisting of a cocktail of dicer substrate siRNAs (dsiRNAs) targeting both viral and cellular transcripts. We report in this study that the dendrimer-dsiRNA treatment suppressed HIV-1 infection by several orders of magnitude and protected against viral induced CD4(+) T-cell depletion. We also demonstrated that follow-up injections of the dendrimer-cocktailed dsiRNAs following viral rebound resulted in complete inhibition of HIV-1 titers. Biodistribution studies demonstrate that the dendrimer-dsiRNAs preferentially accumulate in peripheral blood mononuclear cells (PBMCs) and liver and do not exhibit any discernable toxicity. These data demonstrate for the first time efficacious combinatorial delivery of anti-host and -viral siRNAs for HIV-1 treatment in vivo. The dendrimer delivery approach therefore represents a promising method for systemic delivery of combinations of siRNAs for treatment of HIV-1 infection.


Assuntos
Linfócitos T CD4-Positivos/virologia , Infecções por HIV/prevenção & controle , Infecções por HIV/virologia , HIV-1/fisiologia , Nanopartículas/administração & dosagem , RNA Interferente Pequeno/administração & dosagem , Animais , Linfócitos T CD4-Positivos/imunologia , RNA Helicases DEAD-box/metabolismo , Proteínas de Ligação a DNA/fisiologia , Dendrímeros , Modelos Animais de Doenças , Citometria de Fluxo , Infecções por HIV/genética , Humanos , Subunidade gama Comum de Receptores de Interleucina/fisiologia , Leucócitos Mononucleares/citologia , Leucócitos Mononucleares/metabolismo , Leucócitos Mononucleares/virologia , Fígado/citologia , Fígado/metabolismo , Camundongos , Camundongos Endogâmicos BALB C , Camundongos Knockout , RNA Interferente Pequeno/genética , RNA Viral/genética , Ribonuclease III/metabolismo , Linfócitos T Auxiliares-Indutores/imunologia , Linfócitos T Auxiliares-Indutores/virologia , Carga Viral , Viremia/genética , Viremia/prevenção & controle , Viremia/virologia , Produtos do Gene rev do Vírus da Imunodeficiência Humana/antagonistas & inibidores , Produtos do Gene rev do Vírus da Imunodeficiência Humana/genética , Produtos do Gene rev do Vírus da Imunodeficiência Humana/metabolismo , Produtos do Gene tat do Vírus da Imunodeficiência Humana/antagonistas & inibidores , Produtos do Gene tat do Vírus da Imunodeficiência Humana/genética , Produtos do Gene tat do Vírus da Imunodeficiência Humana/metabolismo
13.
Nucleic Acids Res ; 38(1): 239-52, 2010 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-19850724

RESUMO

MicroRNAs (miRNAs) are 21-22 nucleotide regulatory small RNAs that repress message translation via base-pairing with complementary sequences in the 3' untranslated region (3'UTR) of targeted transcripts. To date, it is still difficult to find a true miRNA target due to lack of a clear understanding of how miRNAs functionally interact with their targeted transcripts for efficient repression. Previous studies have shown that nucleotides 2 to 7 at the 5'-end of a mature miRNA, the 'seed sequence', can nucleate miRNA/target interactions. In the current study, we have validated that the RhoB mRNA is a bona fide miR-223 target. We have analyzed the functional activities of two miR223-binding sites within the RhoB 3'UTR. We find that the two miR-223 target sites in the RhoB 3'UTR contribute differentially to the total repression of RhoB translation. Moreover, we demonstrate that some AU-rich motifs located upstream of the distal miRNA-binding site enhance miRNA function, independent of the miRNA target sequences being tested. We also demonstrate that the AU-rich sequence elements are polar, and do not affect the activities of miRNAs whose sites lie upstream of these elements. These studies provide further support for the role of sequences outside of miRNA target region influencing miRNA function.


Assuntos
Regiões 3' não Traduzidas , Regulação da Expressão Gênica , MicroRNAs/metabolismo , Biossíntese de Proteínas , Proteína rhoB de Ligação ao GTP/genética , Adenina/análise , Sequência de Bases , Sítios de Ligação , Linhagem Celular , Humanos , Dados de Sequência Molecular , Proteínas de Ligação a RNA/metabolismo , Tristetraprolina/metabolismo , Uracila/análise
14.
RNA ; 15(9): 1640-51, 2009 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-19617315

RESUMO

MicroRNAs (miRNAs) are 21-25-nucleotide-long, noncoding RNAs that are involved in translational regulation. Most miRNAs derive from a two-step sequential processing: the generation of pre-miRNA from pri-miRNA by the Drosha/DGCR8 complex in the nucleus, and the generation of mature miRNAs from pre-miRNAs by the Dicer/TRBP complex in the cytoplasm. Sequence variation around the processing sites, and sequence variations in the mature miRNA, especially the seed sequence, may have profound affects on miRNA biogenesis and function. In the context of analyzing the roles of miRNAs in Schizophrenia and Autism, we defined at least 24 human X-linked miRNA variants. Functional assays were developed and performed on these variants. In this study we investigate the affects of single nucleotide polymorphisms (SNPs) on the generation of mature miRNAs and their function, and report that naturally occurring SNPs can impair or enhance miRNA processing as well as alter the sites of processing. Since miRNAs are small functional units, single base changes in both the precursor elements as well as the mature miRNA sequence may drive the evolution of new microRNAs by altering their biological function. Finally, the miRNAs examined in this study are X-linked, suggesting that the mutant alleles could be determinants in the etiology of diseases.


Assuntos
MicroRNAs/genética , MicroRNAs/fisiologia , Polimorfismo de Nucleotídeo Único/fisiologia , Transtorno Autístico/genética , Sequência de Bases , Mapeamento Cromossômico , Cromossomos Humanos X/genética , Genes Ligados ao Cromossomo X/genética , Humanos , Masculino , MicroRNAs/biossíntese , MicroRNAs/metabolismo , Conformação de Ácido Nucleico , Processamento Pós-Transcricional do RNA/genética , Sítios de Splice de RNA/genética , Esquizofrenia/genética , Homologia de Sequência do Ácido Nucleico
15.
Mol Ther ; 18(4): 796-802, 2010 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-20104214

RESUMO

Small-interfering RNAs (siRNAs) and micro-RNAs (miRNAs) are distinguished by their modes of action. SiRNAs serve as guides for sequence-specific cleavage of complementary mRNAs and the targets can be in coding or noncoding regions of the target transcripts. MiRNAs inhibit translation via partially complementary base-pairing to 3' untranslated regions (UTRs) and are generally ineffective when targeting coding regions of a transcript. In this study, we deliberately designed siRNAs that simultaneously direct cleavage and translational suppression of HIV RNAs, or cleavage of the mRNA encoding the HIV coreceptor CCR5 and suppression of translation of HIV. These bifunctional siRNAs trigger inhibition of HIV infection and replication in cell culture. The design principles have wide applications throughout the genome, as about 90% of genes harbor sites that make the design of bifunctional siRNAs possible.


Assuntos
Terapia Genética , Infecções por HIV/terapia , HIV/fisiologia , MicroRNAs/genética , RNA Interferente Pequeno/genética , Receptores CCR5/genética , Linhagem Celular , HIV/genética , Humanos , Biossíntese de Proteínas/genética , RNA Mensageiro/genética , Replicação Viral
16.
Nucleic Acids Res ; 37(9): 3094-109, 2009 May.
Artigo em Inglês | MEDLINE | ID: mdl-19304999

RESUMO

The envelope glycoprotein of human immunodeficiency virus (HIV) consists of an exterior glycoprotein (gp120) and a trans-membrane domain (gp41) and has an important role in viral entry into cells. HIV-1 entry has been validated as a clinically relevant anti-viral strategy for drug discovery. In the present work, several 2'-F substituted RNA aptamers that bind to the HIV-1(BaL) gp120 protein with nanomole affinity were isolated from a RNA library by the SELEX (Systematic Evolution of Ligands by EXponential enrichment) procedure. From two of these aptamers we created a series of new dual inhibitory function anti-gp120 aptamer-siRNA chimeras. The aptamers and aptamer-siRNA chimeras specifically bind to and are internalized into cells expressing HIV gp160. The Dicer-substrate siRNA delivered by the aptamers is functionally processed by Dicer, resulting in specific inhibition of HIV-1 replication and infectivity in cultured CEM T-cells and primary blood mononuclear cells (PBMCs). Moreover, we have introduced a 'sticky' sequence onto a chemically synthesized aptamer which facilitates attachment of the Dicer substrate siRNAs for potential multiplexing. Our results provide a set of novel inhibitory agents for blocking HIV replication and further validate the use of aptamers for delivery of Dicer substrate siRNAs.


Assuntos
Fármacos Anti-HIV/química , Aptâmeros de Nucleotídeos/química , Proteína gp120 do Envelope de HIV/antagonistas & inibidores , HIV-1/fisiologia , RNA Interferente Pequeno/química , Animais , Fármacos Anti-HIV/metabolismo , Aptâmeros de Nucleotídeos/metabolismo , Sequência de Bases , Células Cultivadas , Proteína gp120 do Envelope de HIV/genética , Proteína gp160 do Envelope de HIV/metabolismo , HIV-1/genética , HIV-1/metabolismo , Humanos , Interferon Tipo I/biossíntese , Dados de Sequência Molecular , RNA Interferente Pequeno/metabolismo , Ribonuclease III/metabolismo , Técnica de Seleção de Aptâmeros , Linfócitos T/imunologia
17.
RNA ; 14(9): 1823-33, 2008 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-18697923

RESUMO

RNA polymerase III (Pol III) expression systems for short hairpin RNAs (U6 shRNAs or chimeric VA1 shRNAs) or individually expressed sense/antisense small interfering RNA (siRNA) strands have been used to trigger RNA interference (RNAi) in mammalian cells. Here we show that individually expressed siRNA expression constructs produce 21-nucleotide siRNAs that strongly accumulate as duplex siRNAs in the nucleus of human cells, exerting sequence-specific silencing activity similar to cytoplasmic siRNAs derived from U6 or VA1-expressed hairpin precursors. In contrast, 29-mer siRNAs separately expressed as sense/antisense strands fail to elicit RNAi activity, despite accumulation of these RNAs in the nucleus. Our findings delineate different intracellular accumulation patterns for the three expression strategies and suggest the possibility of a nuclear RNAi pathway that requires 21-mer duplexes.


Assuntos
Interferência de RNA , RNA Catalítico/metabolismo , RNA Interferente Pequeno/metabolismo , RNA Nuclear Pequeno/genética , Linhagem Celular , Núcleo Celular/metabolismo , Humanos , Modelos Moleculares , Conformação de Ácido Nucleico , Regiões Promotoras Genéticas , RNA Catalítico/genética , RNA Interferente Pequeno/genética
18.
Mol Ther ; 16(1): 170-7, 2008 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-17726454

RESUMO

Promoter expressed long-hairpin RNAs (lhRNAs) that can be processed into multiple small interfering RNA (siRNAs) are being considered as effective agents for treating rapidly mutating viruses such as human immunodeficiency virus (HIV). In the present study, we have generated human U6 promoter-driven lhRNAs of 50, 53, and 80 base pairs (bp) targeting contiguous sequences within the tat and rev genes of HIV-1 and evaluated the efficacy of these lhRNAs as well as their processing in cells. By using multiple G:U mismatches in the stems, we have been able to readily incorporate the long-hairpin structures into a lentiviral vector transduction system. Here we show that such long hairpins can be stably and functionally expressed for a long term in HIV-1 susceptible T cells, where they provide potent inhibition of HIV replication against both non-mutant and mutant variants of HIV-1. Our studies provide strong support for the use of the G:U wobble pair containing lhRNAs to generate multiple siRNAs from a single transcript, but we also show that lhRNAs of 80 bp may be the upper size limit for effectively producing multiple, functional siRNAs.


Assuntos
Fármacos Anti-HIV/metabolismo , HIV-1/genética , Interferência de RNA/fisiologia , RNA Interferente Pequeno/biossíntese , RNA Interferente Pequeno/genética , Sequência de Bases , Linhagem Celular , Regulação para Baixo/genética , Regulação Viral da Expressão Gênica/genética , Humanos , Dados de Sequência Molecular , RNA Interferente Pequeno/fisiologia , RNA Viral/antagonistas & inibidores , RNA Viral/biossíntese , RNA Viral/genética , RNA Viral/fisiologia , Replicação Viral/genética
19.
Mol Ther ; 16(6): 1113-9, 2008 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-18388915

RESUMO

Hammerhead ribozymes have been shown to silence human immunodeficiency virus-1 (HIV-1) gene expression by site-specific cleavage of viral mRNA. The two major factors that determine whether ribozymes will be effective for post-transcriptional gene silencing are colocalization of the ribozyme and the target RNAs, and the choice of an appropriate target site on the mRNA. An effective screening strategy for potential targets on the viral genome is the use of ribozyme libraries in cell culture. Capitalizing on previous findings that HIV-1 and ribozymes can be colocalized in the nucleolus, we created a novel hammerhead ribozyme library by inserting hammerhead ribozymes with fully randomized stems 1 and 2 into the body of the U16 small nucleolar RNA (snoRNA). Following three rounds of cotransfection with an HIV-1 proviral DNA harboring the herpes simplex virus thymidine kinase (HSV-TK) gene, we selected for gancyclovir-resistant cells and identified a ribozyme sequence that could potentially target both the U5 and gag genes of HIV-1 regions on the HIV-1 genome through partial homologies with these targets. When the ribozymes were converted to full complementarity with the targets, they provided potent inhibition of HIV-1 replication in cell culture. These results provide a novel approach for identifying ribozyme targets in HIV-1.


Assuntos
HIV-1/metabolismo , RNA Catalítico/metabolismo , RNA Nucleolar Pequeno/genética , Sequência de Bases , Linhagem Celular , Nucléolo Celular/metabolismo , DNA Complementar/metabolismo , Ganciclovir/farmacologia , Biblioteca Gênica , Genoma Viral , Humanos , Dados de Sequência Molecular , Interferência de RNA , RNA Catalítico/química , RNA Mensageiro/metabolismo , Transfecção
20.
Mol Ther ; 16(8): 1481-9, 2008 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-18461053

RESUMO

The successful use of small interfering RNAs (siRNAs) for therapeutic purposes requires safe and efficient delivery to specific cells and tissues. In this study, we demonstrate cell type-specific delivery of anti-human immunodeficiency virus (anti-HIV) siRNAs through fusion to an anti-gp120 aptamer. The envelope glycoprotein is expressed on the surface of HIV-1-infected cells, allowing binding and internalization of the aptamer-siRNA chimeric molecules. We demonstrate that the anti-gp120 aptamer-siRNA chimera is specifically taken up by cells expressing HIV-1 gp120, and that the appended siRNA is processed by Dicer; this releases an anti-tat/rev siRNA which, in turn, inhibits HIV replication. We show for the first time a dual functioning aptamer-siRNA chimera in which both the aptamer and the siRNA portions have potent anti-HIV activities. We also show that gp120 expressed on the surface of HIV-infected cells can be used for aptamer-mediated delivery of anti-HIV siRNAs.


Assuntos
Aptâmeros de Nucleotídeos/genética , Inativação Gênica , Proteína gp120 do Envelope de HIV/genética , RNA Interferente Pequeno/genética , Animais , Northern Blotting , Células CHO , Cricetinae , Cricetulus , Células Eucarióticas/metabolismo , Células Eucarióticas/virologia , Células HCT116 , Infecções por HIV/genética , Infecções por HIV/terapia , HIV-1/genética , Humanos , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Transcrição Gênica , Transfecção/métodos
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