Geographic pattern of phytoplankton community and their drivers in lakes of middle and lower reaches of Yangtze River floodplain, China.

Disentangling the relative contributions of deterministic and stochastic processes was critical to compressive understanding of underlying mechanism governing geographic pattern and assembly of phytoplankton community, while it was seldom performed in connected lakes under human pressure. Here, we investigated phytoplankton community pattern in relation to environmental and spatial factors over 81 lakes located in the middle and lower reaches of Yangtze River (MLYR) floodplain, where many lakes suffered from eutrophication and cyanobacterial blooms. A majority of MLYR lakes had higher phytoplankton abundance surpassing 107 cells/L and were dominated by common bloom-forming cyanobacterial genera, including Pseudanabaena, Microcystis, Merismopedia, Dolichospermum, Limnothrix, and Raphidiopsis. Phytoplankton community exhibited a striking geographical pattern both for taxonomic and functional compositions, while functional groups were less sensitive, and dissimilarity in communities displayed no significant increases with increasing geographical distance. Further, species richness explained much higher percentage of community variations than species turnover, indicating a reduced effect of environmental filtering of phytoplankton species with tolerance to similar environments in connected MLYR lakes. Both deterministic and stochastic processes governed assembly and biogeographic of phytoplankton community. Variation partition analysis showed that spatial factors exhibited greater influence on phytoplankton community compared to environmental variables. The stronger influence of spatial factors was further demonstrated by Mantel test and neutral community model. These findings indicate that deterministic and stochastic processes exhibited similar biogeographic patterns for phytoplankton community in MLYR lakes, but stochastic process was overwhelmingly dominated. Moreover, a large proportion of unexplained variation implies that complex interactions exist to shape assembly mechanism of phytoplankton community in MLYR lakes.

[Cyanobacterial genome transposable element mining and analysis based on 454 deep-sequencing data set].

Researches on the next generation sequencing (NGS) and the comparative genome analysis have recently been concerned. The analyses on transposable element composition and abundance are important parts for genome studies. Generally, the analyses of transposable element system were based on the complete spliced genomes; however, the post-processing and sequence splicing of the huge amount of short sequences from the 454 sequencer always encounter problems. Moreover, the occasion that large amount of repeat elements made up by transposable elements were incorrectly splicing or lost, leading to uncertain results. This study aimed at the construction of a framework to automatically analyze the insert sequence (IS) abundance and their composition based on a stimulated Roche 454 deep-sequencing data set, which was a 33-fold coverage of Microcystis aeruginosa NIES 843 genome. The result from the examination under the setting of three classes of division on the IS element candidates and a separated transposase examination thresholds is the most reliable. It showed that the abundance of IS element in this stimulated dataset was 10.38%, including 14 IS families and 66 IS subfamilies, which demonstrated no significant difference with the two sets of previous analysis results based on the spliced M. aeruginosa NIES 843 genome and a high percentage of IS element sequence overlap, indicating the reliability of this framework.

[Seasonal variation of phytoplankton community structure in the Tianhe Reservoir of the Daluoshan Mountain in southern Zhejiang Province, China and its indication to water quality]. / 浙南大罗山天河水库浮游植物群落结构的季节变化及对水质的指示作用.

To explore the association between phytoplankton community structure and water quality of the Tianhe Reservoir in Wenzhou, Zhejiang, we examined the phytoplankton and physico-chemical factors in the Tianhe Reservoir from February 2019 to January 2020. A total of 89 phytoplankton species belonging to 60 genera and 7 phyla were identified. The annual average abundance and biomass of phytoplankton were 2.02×105 cells·L-1 and 0.26 mg·L-1 respectively. Bacillariophyta was dominant in the whole year. Chlorophyta was dominant in spring and autumn. Cyanophyta was dominant in summer. Both Euglenophyta and Pyrrophyta appeared in the whole year. Cryptophyta appeared in autumn and winter. However, none of them was dominant due to their low abundance. The dominant species throughout the year were Melosira granulata, Synedra acus, Navicula cryptocephala, Asterionella formosa, Pseudoanabaena, Closterlum venus, Pediastrum duplex, Peridinium bipes, Dinobryon cylindricum and Cryptomonas ovata. Results of redundancy analysis (RDA) showed that water temperature, total nitrogen, CODMn and pH value were the main factors driving phytoplankton community structure in the whole year. According to the evaluation based on diversity indices, including Shannon index, Pielou evenness index, Margalef richness index and comprehensive trophic status index (TLI), water quality of Tianhe Reservoir is between oligotrophication and mesotrophication.

Physiological responses of Microcystis aeruginosa PCC7806 to nonanoic acid stress.

A recent study has shown that nonanoic acid (NA) is one of the strongest allelochemicals to a cyanobacterium Microcystis aeruginosa, but the physiological responses of M. aeruginosa to NA stress remain unknown. In this study, physiological characters such as the growth rate, photosynthetic processes, phosphorus and nitrogen uptake kinetics, and the contents of intracellular microcystin of M. aeruginosa PCC7806 were studied under the NA stress. The results showed that the growth rates of M. aeruginosa PCC 7806 were significantly inhibited in all NA stress treatments during first 3 days after exposure, and the growth rate was recovered after 5-day exposure. After 2-day exposure, the contents of both phycocyanin and allophycocyanin per cell decreased at NA concentration of 4 mg L(-1), and oxygen evolution was inhibited even at the concentration of 0.5 mg L(-1), but carotenoid content per cell was slightly boosted in NA stress. Physiological recovery of M. aeruginosa PCC7806 was observed after 7-day exposure to NA. It was shown that NA stress had no effect on uptake of nitrogen, but could stimulate the uptake of phosphorus. The contents of intracellular microcystin have not been affected in all NA treatments in contrast with the control.

Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing.

The cyanobacterial genus Microcystis is well known as the main group that forms harmful blooms in water. A strain of Microcystis, M. panniformis FACHB1757, was isolated from Meiliang Bay of Lake Taihu in August 2011. The whole genome was sequenced using PacBio RS II sequencer with 48-fold coverage. The complete genome sequence with no gaps contained a 5,686,839 bp chromosome and a 38,683 bp plasmid, which coded for 6,519 and 49 proteins, respectively. Comparison with strains of M. aeruginosa and some other water bloom-forming cyanobacterial species revealed large-scale structure rearrangement and length variation at the genome level along with 36 genomic islands annotated genome-wide, which demonstrates high plasticity of the M. panniformis FACHB1757 genome and reveals that Microcystis has a flexible genome evolution.

DNA base composition of planktonic species of Anabaena (Cyanobacteria) and its taxonomic value.

Fifty axenic strains of planktonic Anabaena, including 24 strains of the straight form and 26 strains of the coiled form, were examined for their DNA base composition (GC content). The taxonomic value of their GC content at species level was evaluated by comparing their morphological, physiological and biochemical properties. The DNA base composition determined for all fifty strains ranged from 35.9 to 56.4 mol% GC. The straight-form strains were in the range of 35.9-56.4 mol% GC, while coiled forms were in the range of 38.1-50.3 mol% GC. In general, strains assigned to the same species showed similar DNA base composition. However, of three strains of A. affinis Lemmermann that were separated into two categories, two had 40.6-40.9 mol% GC, and the third strain 45.6 mol% GC. It is noteworthy that the DNA base composition of the newly established species A. eucompacta Li et Watanabe was 45.5 mol% GC, which differed from 39.5 mol% GC of the morphologically close species, A. compacta (Nygarrd) Hickel.

Cyanobacterial fossils from 252†Ma old microbialites and their environmental significance.

The end-Permian mass extinction was followed by the formation of an enigmatic rock layer with a distinctive macroscopic spotted or dendroid fabric. This deposit has been interpreted as microbial reef rock, digitate dendrolite, digital thrombolite, dendritic thrombolite, or bacterial deposits. Agreement has been reached in considering them as microbialites, but not in their formation. This study has revealed that the spotted and dendroid microbialites were composed of numerous fossil casts formed by the planktic cyanobacterium, Microcystis, a coccoid genus that at the present-day commonly forms blooms in modern lakes, rivers, and reservoirs. The abundance of the fossils and the diagenesis they experienced has determined the macroscopic fabric: where they abundant, the rock appears as dendroid, otherwise, it appears as spotted. The ancient Microcystis bloom might produce toxin to kill other metazoans, and be responsible for the oceanic anoxia that has puzzled so many researchers for so many years.