Carbon dioxide and hydrogen sulfide associations with regional bacterial diversity patterns in microbially induced concrete corrosion.

The microbial communities associated with deteriorating concrete corrosion fronts were characterized in 35 samples taken from wastewater collection and treatment systems in ten utilities. Bacterial communities were described using Illumina MiSeq sequencing of the V1V2 region of the small subunit ribosomal ribonucleic acid (SSU-rRNA) gene recovered from fresh corrosion products. Headspace gas concentrations (hydrogen sulfide, carbon dioxide, and methane), pore water pH, moisture content, and select mineralogy were tested for correlation to community outcomes and corrosion extent using pairwise linear regressions and canonical correspondence analysis. Corroding concrete was most commonly characterized by moisture contents greater than 10%, pore water pH below one, and limited richness (<10 taxa). Bacterial community composition was not correlated to geographic location when considered independently from other environmental factors. Corrosion was most severe in sites with high levels of hydrogen sulfide (>100 ppm) and carbon dioxide (>1%) gases, conditions which also were associated with low diversity biofilms dominated by members of the acidophilic sulfur-oxidizer genus Acidithiobacillus.

Estimated scale of costs to remove PFAS from the environment at current emission rates.

This discussion article builds upon existing data to ask whether environmental remediation and treatment is an economically viable solution to manage global environmental stocks of per- and polyfluoroalkyl substances (PFAS) without extensive use restrictions. Their environmental persistence means that PFAS released into the environment will remain there until actively removed and destroyed. Thus, removing and destroying PFAS from the global environment at the same rate they are currently being added reflects a theoretical steady-state condition where global PFAS stocks remain constant. Current costs to remove perfluoroalkyl acids (PFAAs), a subclass of PFAS, from the environment at the same rate they are being added were estimated here at 20 to 7000 trillion USD per year. If the ratio of total PFAS emissions to PFAAs emissions matches current production ratios, total PFAS release rates and associated treatment costs could be 10 to 10,000 higher than presented above for PFAAs only. Thus, current costs to remove and destroy the total PFAS mass released annually into the environment would likely exceed the global GDP of 106 trillion USD. While this level of treatment is not technically or economically achievable, it highlights the unaffordability of using environmental remediation alone to manage environmental PFAS stocks. Without significant reductions in production and emissions, the mass of PFAS present in the global environment will continue to rise. Treating targeted environmental media will be needed to manage human and environmental health impacts, but we are limited to the level of treatment that is practical and affordable.

Is removal and destruction of perfluoroalkyl and polyfluoroalkyl substances from wastewater effluent affordable?

Several jurisdictions are currently evaluating regulatory standards for perfluoroalkyl and polyfluoroalkyl substances (PFAS) in municipal water resource recovery facility (WRRF) effluent. Effective and responsible implementation of PFAS effluent limits should consider the costs and capabilities of currently available technologies, because the costs of meeting WRRF PFAS limits could disproportionally fall to ratepayers. Cost curves were developed for currently available PFAS separation and destruction options, assuming effluent treatment targets near current analytical detection limits. Removing and destroying PFAS from municipal WRRF effluent is estimated to increase costs per household by a factor of between 2 and 210, using Minnesota-specific data as an example. Estimated costs per household would increase more for residents of smaller communities, averaging 33% of median household income (MHHI) in communities smaller than 1000 people. This exceeds the U.S. Environmental Protection Agency (EPA)-developed affordability index of 2% of MHHI by a factor of 16. Estimated costs per household to remove and destroy PFAS varied among locations, primarily based on WRRF and community size, median income, rural versus urban, and type of wastewater treatment processes currently used. PRACTITIONER POINTS: Required tertiary treatment before WRRF effluent PFAS separation, using currently available technologies, is a significant portion (~40-80%) of estimated costs. Adding PFAS separation, destruction, and pre-treatment would make Minnesota wastewater rates unaffordable (defined by EPA affordability guidance) without external funding. The estimated cost per household is higher for smaller communities and would require substantial external funding to maintain rate affordability. Design and operating uncertainties remain for full-scale WRRF retrofits to consistently remove and destroy effluent PFAS with limited full-scale applications.

Tetracycline resistance and Class 1 integron genes associated with indoor and outdoor aerosols.

Genes encoding tetracycline resistance and the integrase of Class 1 integrons were enumerated using quantitative PCR from aerosols collected from indoor and outdoor environments. Concentrated animal feeding operations (CAFOs) and human-occupied indoor environments (two clinics and a homeless shelter) were found to be a source of airborne tet(X) and tet(W) genes. The CAFOs had 10- to 100-times higher concentrations of airborne 16S rRNA, tet(X), and tet(W) genes than other environments sampled, and increased concentrations of aerosolized bacteria correlated with increased concentrations of airborne resistance genes. The two CAFOs studied had statistically similar concentrations of resistance genes in their aerosol samples, even though antibiotic use was markedly different between the two operations. Additionally, tet(W) genes were recovered in outdoor air within 2 km of livestock operations, which suggests that antibiotic resistance genes may be transported via aerosols on local scales. The integrase gene (intI1) from Class 1 integrons, which has been associated with multidrug resistance, was detected in CAFOs but not in human-occupied indoor environments, suggesting that CAFO aerosols could serve as a reservoir of multidrug resistance. In conclusion, our results show that CAFOs and clinics are sources of aerosolized antibiotic resistance genes that can potentially be transported via air movement.

Intense transpositional activity of insertion sequences in an ancient obligate endosymbiont.

The streamlined genomes of ancient obligate endosymbionts generally lack transposable elements, such as insertion sequences (IS). Yet, the genome of Wolbachia, one of the most abundant bacterial endosymbionts on Earth, is littered with IS. Such a paradox raises the question as to why there are so many ISs in the genome of this ancient endosymbiont. To address this question, we investigated IS transpositional activity in the unculturable Wolbachia by tracking the evolutionary dynamics and history of ISWpi1 elements. We show that 1) ISWpi1 is widespread in Wolbachia, being present in at least 55% of the 40 sampled strains, 2) ISWpi1 copies exhibit virtually identical nucleotide sequences both within and among Wolbachia genomes and possess an intact transposase gene, 3) individual ISWpi1 copies are differentially inserted among Wolbachia genomes, and 4) ISWpi1 occurs at variable copy numbers among Wolbachia genomes. Collectively, our results provide compelling evidence for intense ISWpi1 transpositional activity and frequent ISWpi1 horizontal transmission among strains during recent Wolbachia evolution. Thus, the genomes of ancient obligate endosymbionts can carry high loads of functional and transpositionally active transposable elements. Our results also indicate that Wolbachia genomes have experienced multiple and temporally distinct ISWpi1 invasions during their evolutionary history. Such recurrent exposition to new IS invasions may explain, at least partly, the unusually high density of transposable elements found in the genomes of Wolbachia endosymbionts.

Diffusion susceptibility demonstrates relative inhibition potential of sorbent-immobilized heavy metals against sulfur oxidizing acidophiles.

A new generation of laminates and cementitious materials incorporate antimicrobial metals into domestic infrastructure. Conventional culturing approaches are unsuitable for assessing the inhibitory properties of these materials. Modifications to the radial Kirby-Bauer antibiotic assay, which incorporate metal impregnated activated carbon in linear formats, reveal relative metal sensitivities of destructive acidophiles.

Pain flare following external beam radiotherapy and meaningful change in pain scores in the treatment of bone metastases.

BACKGROUND AND PURPOSE: To examine the incidence of pain flare following external beam radiotherapy and to determine what constitutes a meaningful change in pain scores in the treatment of bone metastases. PATIENTS AND METHODS: Patients with bone metastases treated with external beam radiotherapy were asked to score their pain on a scale of 0-10 before the treatment (baseline), daily during the treatment and for 10 days after completion of external beam radiation. Pain flare was defined as a two-point increase from baseline pain in the pain scale of 0-10 with no decrease in analgesic intake or a 25% increase in analgesic intake employing daily oral morphine equivalent with no decrease in pain score. To distinguish pain flare from progression of pain, we required the pain score and analgesic intake to return back to baseline levels after the increase/flare. They were also asked to indicate if their pain changed during that time compared to pre-treatment level. The change in pain score was compared with patient perception. RESULTS: Eighty-eight patients were evaluated in this study. There were 49 male and 39 female patients with the median age of 70 years. Twelve of 88 patients (14%) had pain flare on day 1. The overall incidence of pain flare during the study period ranged from 2 to 16%. A total of 797 pain scorings were obtained. Patients perceived an improvement in pain when their self-reported pain score decreased by at least two points. CONCLUSIONS: Our study confirms the occurrence of pain flare following the external beam radiotherapy in the treatment of bone metastases. Further studies are required to predict who are at risk for flare. Appropriate measures can be taken to alleviate the pain flare. The finding in the meaningful change in pain scores supports the investigator-defined partial response used in some clinical trials.

High-resolution microbial community succession of microbially induced concrete corrosion in working sanitary manholes.

Microbially-induced concrete corrosion in headspaces threatens wastewater infrastructure worldwide. Models for predicting corrosion rates in sewer pipe networks rely largely on information from culture-based investigations. In this study, the succession of microbes associated with corroding concrete was characterized over a one-year monitoring campaign using rRNA sequence-based phylogenetic methods. New concrete specimens were exposed in two highly corrosive manholes (high concentrations of hydrogen sulfide and carbon dioxide gas) on the Colorado Front Range for up to a year. Community succession on corroding surfaces was assessed using Illumina MiSeq sequencing of 16S bacterial rRNA amplicons and Sanger sequencing of 16S universal rRNA clones. Microbial communities associated with corrosion fronts presented distinct succession patterns which converged to markedly low α-diversity levels (< 10 taxa) in conjunction with decreasing pH. The microbial community succession pattern observed in this study agreed with culture-based models that implicate acidophilic sulfur-oxidizer Acidithiobacillus spp. in advanced communities, with two notable exceptions. Early communities exposed to alkaline surface pH presented relatively high α-diversity, including heterotrophic, nitrogen-fixing, and sulfur-oxidizing genera, and one community exposed to neutral surface pH presented a diverse transition community comprised of less than 20% sulfur-oxidizers.

Insertion sequence inversions mediated by ectopic recombination between terminal inverted repeats.

Transposable elements are widely distributed and diverse in both eukaryotes and prokaryotes, as exemplified by DNA transposons. As a result, they represent a considerable source of genomic variation, for example through ectopic (i.e. non-allelic homologous) recombination events between transposable element copies, resulting in genomic rearrangements. Ectopic recombination may also take place between homologous sequences located within transposable element sequences. DNA transposons are typically bounded by terminal inverted repeats (TIRs). Ectopic recombination between TIRs is expected to result in DNA transposon inversions. However, such inversions have barely been documented. In this study, we report natural inversions of the most common prokaryotic DNA transposons: insertion sequences (IS). We identified natural TIR-TIR recombination-mediated inversions in 9% of IS insertion loci investigated in Wolbachia bacteria, which suggests that recombination between IS TIRs may be a quite common, albeit largely overlooked, source of genomic diversity in bacteria. We suggest that inversions may impede IS survival and proliferation in the host genome by altering transpositional activity. They may also alter genomic instability by modulating the outcome of ectopic recombination events between IS copies in various orientations. This study represents the first report of TIR-TIR recombination within bacterial IS elements and it thereby uncovers a novel mechanism of structural variation for this class of prokaryotic transposable elements.

Human adenoviruses types associated with non-gonococcal urethritis.

BACKGROUND: Role of adenoviruses in non-gonococcal urethritis (NGU) has been reported in only a few studies. The aim of the study was to detect and type adenoviruses in men presenting with NGU. METHODS: 636 heterosexual and homosexual men presenting with NGU from Melbourne, Australia were recently evaluated for various aetiological organisms including adenovirus. We utilised methods including polymerase chain reaction for detection followed by sequence analysis to type positive samples. RESULTS: Overall, 12 samples from patients with NGU had adenovirus detected. Five types were identified: type 4 (subgenus E), type 35 (subgenus B), and types 9, 37 and 49 (subgenus D). The presence of mixed adenovirus strains was not detected in any sample. CONCLUSION: Overall, subgenus B, D and E were predominant in this patient population.