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1.
BMC Genomics ; 25(1): 692, 2024 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-39009997

RESUMO

BACKGROUND: Cable bacteria are filamentous members of the Desulfobulbaceae family that are capable of performing centimetre­scale electron transport in marine and freshwater sediments. This long­distance electron transport is mediated by a network of parallel conductive fibres embedded in the cell envelope. This fibre network efficiently transports electrical currents along the entire length of the centimetre­long filament. Recent analyses show that these fibres consist of metalloproteins that harbour a novel nickel­containing cofactor, which indicates that cable bacteria have evolved a unique form of biological electron transport. This nickel­dependent conduction mechanism suggests that cable bacteria are strongly dependent on nickel as a biosynthetic resource. Here, we performed a comprehensive comparative genomic analysis of the genes linked to nickel homeostasis. We compared the genome­encoded adaptation to nickel of cable bacteria to related members of the Desulfobulbaceae family and other members of the Desulfobulbales order. RESULTS: Presently, four closed genomes are available for the monophyletic cable bacteria clade that consists of the genera Candidatus Electrothrix and Candidatus Electronema. To increase the phylogenomic coverage, we additionally generated two closed genomes of cable bacteria: Candidatus Electrothrix gigas strain HY10­6 and Candidatus Electrothrix antwerpensis strain GW3­4, which are the first closed genomes of their respective species. Nickel homeostasis genes were identified in a database of 38 cable bacteria genomes (including 6 closed genomes). Gene prevalence was compared to 19 genomes of related strains, residing within the Desulfobulbales order but outside of the cable bacteria clade, revealing several genome­encoded adaptations to nickel homeostasis in cable bacteria. Phylogenetic analysis indicates that nickel importers, nickel­binding enzymes and nickel chaperones of cable bacteria are affiliated to organisms outside the Desulfobulbaceae family, with several proteins showing affiliation to organisms outside of the Desulfobacterota phylum. Conspicuously, cable bacteria encode a unique periplasmic nickel export protein RcnA, which possesses a putative cytoplasmic histidine­rich loop that has been largely expanded compared to RcnA homologs in other organisms. CONCLUSION: Cable bacteria genomes show a clear genetic adaptation for nickel utilization when compared to closely related genera. This fully aligns with the nickel­dependent conduction mechanism that is uniquely found in cable bacteria.


Assuntos
Genoma Bacteriano , Genômica , Homeostase , Níquel , Filogenia , Níquel/metabolismo , Deltaproteobacteria/genética , Deltaproteobacteria/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo
2.
Environ Microbiol ; 26(10): e16694, 2024 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-39414566

RESUMO

Cable bacteria exhibit a unique metabolism involving long-distance electron transport, significantly impacting elemental cycling in various sediments. These long filamentous bacteria are distributed circumglobally, suggesting an effective mode of dispersal. However, oxygen strongly inhibits their activity, posing a challenge to their dispersal through the water column. We investigated the effective dispersal of marine cable bacteria in a compartmentalised microcosm experiment. Cable bacteria were grown in natural 'source' sediment, and their metabolic activity was recorded in autoclaved 'destination' cores, which were only accessible through oxygenated seawater. Colonisation occurred over weeks, and destination cores contained only one cable bacterium strain. Filament 'snippets' (fragments with a median size of ~15 cells) accumulated in the microcosm water, with about 30% of snippets attached to sediment particles. Snippet release was also observed in situ in a salt marsh creek. This provides a model for the dispersal of cable bacteria through oxygenated water: snippets are formed by filament breakage in the sediment, released into the overlying water and transported with sediment particles that likely offer protection. These insights are informative for broader theories on microbial community assembly and prokaryotic biogeography in marine sediments.


Assuntos
Sedimentos Geológicos , Água do Mar , Sedimentos Geológicos/microbiologia , Água do Mar/microbiologia , Bactérias/metabolismo , Bactérias/classificação , Oxigênio/metabolismo
3.
Phys Chem Chem Phys ; 26(4): 3139-3151, 2024 Jan 24.
Artigo em Inglês | MEDLINE | ID: mdl-38189548

RESUMO

The recent discovery of cable bacteria has greatly expanded the known length scale of biological electron transport, as these multi-cellular bacteria are capable of mediating electrical currents across centimeter-scale distances. To enable such long-range conduction, cable bacteria embed a network of regularly spaced, parallel protein fibers in their cell envelope. These fibers exhibit extraordinary electrical properties for a biological material, including an electrical conductivity that can exceed 100 S cm-1. Traditionally, long-range electron transport through proteins is described as a multi-step hopping process, in which the individual hopping steps are described by Marcus electron transport theory. Here, we investigate to what extent such a classical hopping model can explain the conductance data recorded for individual cable bacterium filaments. To this end, the conductive fiber network in cable bacteria is modelled as a set of parallel one-dimensional hopping chains. Comparison of model simulated and experimental current(I)/voltage(V) curves, reveals that the charge transport is field-driven rather than concentration-driven, and there is no significant injection barrier between electrodes and filaments. However, the observed high conductivity levels (>100 S cm-1) can only be reproduced, if we include much longer hopping distances (a > 10 nm) and lower reorganisation energies (λ < 0.2 eV) than conventionally used in electron relay models of protein structures. Overall, our model analysis suggests that the conduction mechanism in cable bacteria is markedly distinct from other known forms of long-range biological electron transport, such as in multi-heme cytochromes.


Assuntos
Bactérias , Transporte de Elétrons , Bactérias/química , Condutividade Elétrica
4.
Sensors (Basel) ; 24(8)2024 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-38676032

RESUMO

Over the past few years, the scale of sensor networks has greatly expanded. This generates extended spatiotemporal datasets, which form a crucial information resource in numerous fields, ranging from sports and healthcare to environmental science and surveillance. Unfortunately, these datasets often contain missing values due to systematic or inadvertent sensor misoperation. This incompleteness hampers the subsequent data analysis, yet addressing these missing observations forms a challenging problem. This is especially the case when both the temporal correlation of timestamps within a single sensor and the spatial correlation between sensors are important. Here, we apply and evaluate 12 imputation methods to complete the missing values in a dataset originating from large-scale environmental monitoring. As part of a large citizen science project, IoT-based microclimate sensors were deployed for six months in 4400 gardens across the region of Flanders, generating 15-min recordings of temperature and soil moisture. Methods based on spatial recovery as well as time-based imputation were evaluated, including Spline Interpolation, MissForest, MICE, MCMC, M-RNN, BRITS, and others. The performance of these imputation methods was evaluated for different proportions of missing data (ranging from 10% to 50%), as well as a realistic missing value scenario. Techniques leveraging the spatial features of the data tend to outperform the time-based methods, with matrix completion techniques providing the best performance. Our results therefore provide a tool to maximize the benefit from costly, large-scale environmental monitoring efforts.

5.
Proc Natl Acad Sci U S A ; 117(52): 33043-33050, 2020 12 29.
Artigo em Inglês | MEDLINE | ID: mdl-33318197

RESUMO

For most of Earth's history, the ocean's interior was pervasively anoxic and showed occasional shifts in ocean redox chemistry between iron-buffered and sulfide-buffered states. These redox transitions are most often explained by large changes in external inputs, such as a strongly altered delivery of iron and sulfate to the ocean, or major shifts in marine productivity. Here, we propose that redox shifts can also arise from small perturbations that are amplified by nonlinear positive feedbacks within the internal iron and sulfur cycling of the ocean. Combining observational evidence with biogeochemical modeling, we show that both sedimentary and aquatic systems display intrinsic iron-sulfur bistability, which is tightly linked to the formation of reduced iron-sulfide minerals. The possibility of tipping points in the redox state of sediments and oceans, which allow large and nonreversible geochemical shifts to arise from relatively small changes in organic carbon input, has important implications for the interpretation of the geological rock record and the causes and consequences of major evolutionary transitions in the history of Earth's biosphere.

6.
Proc Natl Acad Sci U S A ; 117(10): 5478-5485, 2020 03 10.
Artigo em Inglês | MEDLINE | ID: mdl-32094191

RESUMO

Multicellularity is a key evolutionary innovation, leading to coordinated activity and resource sharing among cells, which generally occurs via the physical exchange of chemical compounds. However, filamentous cable bacteria display a unique metabolism in which redox transformations in distant cells are coupled via long-distance electron transport rather than an exchange of chemicals. This challenges our understanding of organismal functioning, as the link among electron transfer, metabolism, energy conservation, and filament growth in cable bacteria remains enigmatic. Here, we show that cells within individual filaments of cable bacteria display a remarkable dichotomy in biosynthesis that coincides with redox zonation. Nanoscale secondary ion mass spectrometry combined with 13C (bicarbonate and propionate) and 15N-ammonia isotope labeling reveals that cells performing sulfide oxidation in deeper anoxic horizons have a high assimilation rate, whereas cells performing oxygen reduction in the oxic zone show very little or no label uptake. Accordingly, oxygen reduction appears to merely function as a mechanism to quickly dispense of electrons with little to no energy conservation, while biosynthesis and growth are restricted to sulfide-respiring cells. Still, cells can immediately switch roles when redox conditions change, and show no differentiation, which suggests that the "community service" performed by the cells in the oxic zone is only temporary. Overall, our data reveal a division of labor and electrical cooperation among cells that has not been seen previously in multicellular organisms.


Assuntos
Deltaproteobacteria/crescimento & desenvolvimento , Deltaproteobacteria/metabolismo , Eletricidade , Transporte de Elétrons , Amônia/metabolismo , Isótopos de Carbono , Espectrometria de Massa de Íon Secundário , Sulfetos/metabolismo
7.
Proc Natl Acad Sci U S A ; 116(38): 19116-19125, 2019 09 17.
Artigo em Inglês | MEDLINE | ID: mdl-31427514

RESUMO

Cable bacteria of the family Desulfobulbaceae form centimeter-long filaments comprising thousands of cells. They occur worldwide in the surface of aquatic sediments, where they connect sulfide oxidation with oxygen or nitrate reduction via long-distance electron transport. In the absence of pure cultures, we used single-filament genomics and metagenomics to retrieve draft genomes of 3 marine Candidatus Electrothrix and 1 freshwater Ca. Electronema species. These genomes contain >50% unknown genes but still share their core genomic makeup with sulfate-reducing and sulfur-disproportionating Desulfobulbaceae, with few core genes lost and 212 unique genes (from 197 gene families) conserved among cable bacteria. Last common ancestor analysis indicates gene divergence and lateral gene transfer as equally important origins of these unique genes. With support from metaproteomics of a Ca. Electronema enrichment, the genomes suggest that cable bacteria oxidize sulfide by reversing the canonical sulfate reduction pathway and fix CO2 using the Wood-Ljungdahl pathway. Cable bacteria show limited organotrophic potential, may assimilate smaller organic acids and alcohols, fix N2, and synthesize polyphosphates and polyglucose as storage compounds; several of these traits were confirmed by cell-level experimental analyses. We propose a model for electron flow from sulfide to oxygen that involves periplasmic cytochromes, yet-unidentified conductive periplasmic fibers, and periplasmic oxygen reduction. This model proposes that an active cable bacterium gains energy in the anodic, sulfide-oxidizing cells, whereas cells in the oxic zone flare off electrons through intense cathodic oxygen respiration without energy conservation; this peculiar form of multicellularity seems unparalleled in the microbial world.


Assuntos
Proteínas de Bactérias/metabolismo , Evolução Biológica , Deltaproteobacteria/genética , Deltaproteobacteria/fisiologia , Genoma Bacteriano , Proteoma/análise , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Ciclo do Carbono , Movimento Celular , Quimiotaxia , Citocromos/metabolismo , Deltaproteobacteria/classificação , Transporte de Elétrons , Sedimentos Geológicos/microbiologia , Nitratos/metabolismo , Oxirredução , Oxigênio/metabolismo , Filogenia , Homologia de Sequência , Sulfetos/metabolismo
8.
Anal Chem ; 93(19): 7226-7234, 2021 05 18.
Artigo em Inglês | MEDLINE | ID: mdl-33939426

RESUMO

Cable bacteria are electroactive bacteria that form a long, linear chain of ridged cylindrical cells. These filamentous bacteria conduct centimeter-scale long-range electron transport through parallel, interconnected conductive pathways of which the detailed chemical and electrical properties are still unclear. Here, we combine time-of-flight secondary-ion mass spectrometry (ToF-SIMS) and atomic force microscopy (AFM) to investigate the structure and composition of this naturally occurring electrical network. The enhanced lateral resolution achieved allows differentiation between the cell body and the cell-cell junctions that contain a conspicuous cartwheel structure. Three ToF-SIMS modes were compared in the study of so-called fiber sheaths (i.e., the cell material that remains after the removal of cytoplasm and membranes, and which embeds the electrical network). Among these, fast imaging delayed extraction (FI-DE) was found to balance lateral and mass resolution, thus yielding the following multiple benefits in the study of structure-composition relations in cable bacteria: (i) it enables the separate study of the cell body and cell-cell junctions; (ii) by combining FI-DE with in situ AFM, the depth of Ni-containing protein-key in the electrical transport-is determined with greater precision; and (iii) this combination prevents contamination, which is possible when using an ex situ AFM. Our results imply that the interconnects in extracted fiber sheaths are either damaged during extraction, or that their composition is different from fibers, or both. From a more general analytical perspective, the proposed methodology of ToF-SIMS in the FI-DE mode combined with in situ AFM holds great promise for studying the chemical structure of other biological systems.


Assuntos
Bactérias , Espectrometria de Massa de Íon Secundário , Microscopia de Força Atômica
9.
Environ Res ; 196: 110389, 2021 05.
Artigo em Inglês | MEDLINE | ID: mdl-33129861

RESUMO

Reliable estimates of outdoor air pollution concentrations are needed to support global actions to improve public health. We developed a new approach to estimating annual average outdoor nitrogen dioxide (NO2) concentrations using approximately 20,000 ground-level measurements in Flanders, Belgium combined with aerial images and deep neural networks. Our final model explained 79% of the spatial variability in NO2 (root mean square error of 10-fold cross-validation = 3.58 µg/m3) using only images as model inputs. This novel approach offers an alternative means of estimating large-scale spatial variations in ambient air quality and may be particularly useful for regions of the world without detailed emissions data or land use information typically used to estimate outdoor air pollution concentrations.


Assuntos
Poluentes Atmosféricos , Poluição do Ar , Ciência do Cidadão , Aprendizado Profundo , Poluentes Atmosféricos/análise , Poluição do Ar/análise , Bélgica , Monitoramento Ambiental , Dióxido de Nitrogênio/análise , Material Particulado/análise
10.
Proc Natl Acad Sci U S A ; 115(22): 5786-5791, 2018 05 29.
Artigo em Inglês | MEDLINE | ID: mdl-29735671

RESUMO

Electron transport within living cells is essential for energy conservation in all respiring and photosynthetic organisms. While a few bacteria transport electrons over micrometer distances to their surroundings, filaments of cable bacteria are hypothesized to conduct electric currents over centimeter distances. We used resonance Raman microscopy to analyze cytochrome redox states in living cable bacteria. Cable-bacteria filaments were placed in microscope chambers with sulfide as electron source and oxygen as electron sink at opposite ends. Along individual filaments a gradient in cytochrome redox potential was detected, which immediately broke down upon removal of oxygen or laser cutting of the filaments. Without access to oxygen, a rapid shift toward more reduced cytochromes was observed, as electrons were no longer drained from the filament but accumulated in the cellular cytochromes. These results provide direct evidence for long-distance electron transport in living multicellular bacteria.


Assuntos
Bactérias/química , Bactérias/metabolismo , Transporte de Elétrons/fisiologia , Citocromos/metabolismo , Sedimentos Geológicos/microbiologia , Oxirredução , Oxigênio/metabolismo , Análise Espectral Raman , Sulfetos/metabolismo
11.
FASEB J ; 33(3): 3985-3996, 2019 03.
Artigo em Inglês | MEDLINE | ID: mdl-30521380

RESUMO

The intestinal epithelium plays an essential role in the balance between tolerant and protective immune responses to infectious agents. In vitro models do not typically consider the innate immune response and gut microbiome in detail, so these models do not fully mimic the physiologic aspects of the small intestine. We developed and characterized a long-term in vitro model containing enterocyte, goblet, and immune-like cells exposed to a synthetic microbial community representative of commensal inhabitants of the small intestine. This model showed differential responses toward a synthetic microbial community of commensal bacterial inhabitants of the small intestine in the absence or presence of LPS from Escherichia coli O111:B4. Simultaneous exposure to LPS and microbiota induced impaired epithelial barrier function; increased production of IL-8, IL-6, TNF-α, and C-X-C motif chemokine ligand 16; and augmented differentiation and adhesion of macrophage-like cells and the overexpression of dual oxidase 2 and TLR-2 and -4 mRNA. In addition, the model demonstrated the ability to assess the adhesion of specific bacterial strains from the synthetic microbial community-more specifically, Veillonella parvula-to the simulated epithelium. This novel in vitro model may assist in overcoming sampling and retrieval difficulties when studying host-microbiome interactions in the small intestine.-Calatayud, M., Dezutter, O., Hernandez-Sanabria, E., Hidalgo-Martinez, S., Meysman, F. J. R., Van de Wiele, T. Development of a host-microbiome model of the small intestine.


Assuntos
Microbioma Gastrointestinal , Interações Hospedeiro-Patógeno , Mucosa Intestinal/microbiologia , Cultura Primária de Células/métodos , Células CACO-2 , Quimiocina CXCL16/genética , Quimiocina CXCL16/metabolismo , Escherichia coli/patogenicidade , Células HT29 , Humanos , Interleucina-6/genética , Interleucina-6/metabolismo , Interleucina-8/genética , Interleucina-8/metabolismo , Mucosa Intestinal/metabolismo , Lipopolissacarídeos/metabolismo , Receptor 2 Toll-Like/genética , Receptor 2 Toll-Like/metabolismo , Receptor 4 Toll-Like/genética , Receptor 4 Toll-Like/metabolismo , Fator de Necrose Tumoral alfa/genética , Fator de Necrose Tumoral alfa/metabolismo , Veillonella/patogenicidade
12.
Global Biogeochem Cycles ; 34(2): e2019GB006298, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-32713991

RESUMO

Dark carbon fixation (DCF) by chemoautotrophic microorganisms can sustain food webs in the seafloor by local production of organic matter independent of photosynthesis. The process has received considerable attention in deep sea systems, such as hydrothermal vents, but the regulation, depth distribution, and global importance of coastal sedimentary DCF have not been systematically investigated. Here we surveyed eight coastal sediments by means of stable isotope probing (13C-DIC) combined with bacterial biomarkers (phospholipid-derived fatty acids) and compiled additional rates from literature into a global database. DCF rates in coastal sediments range from 0.07 to 36.30 mmol C m-2 day-1, and there is a linear relation between DCF and water depth. The CO2 fixation ratio (DCF/CO2 respired) also shows a trend with water depth, decreasing from 0.09 in nearshore environments to 0.04 in continental shelf sediments. Five types of depth distributions of chemoautotrophic activity are identified based on the mode of pore water transport (advective, bioturbated, and diffusive) and the dominant pathway of microbial sulfur oxidation. Extrapolated to the global coastal ocean, we estimate a DCF rate of 0.04 to 0.06 Pg C year-1, which is less than previous estimates based on indirect measurements (0.15 Pg C year-1), but remains substantially higher than the global DCF rate at deep sea hydrothermal vents (0.001-0.002 Pg C year-1).

13.
Environ Sci Technol ; 54(18): 11070-11078, 2020 09 15.
Artigo em Inglês | MEDLINE | ID: mdl-32822533

RESUMO

Citizen science projects that monitor air quality have recently drastically expanded in scale. Projects involving thousands of citizens generate spatially dense data sets using low-cost passive samplers for nitrogen dioxide (NO2), which complement data from the sparse reference network operated by environmental agencies. However, there is a critical bottleneck in using these citizen-derived data sets for air-quality policy. The monitoring effort typically lasts only a few weeks, while long-term air-quality guidelines are based on annual-averaged concentrations that are not affected by seasonal fluctuations in air quality. Here, we describe a statistical model approach to reliably transform passive sampler NO2 data from multiweek averages to annual-averaged values. The predictive model is trained with data from reference stations that are limited in number but provide full temporal coverage and is subsequently applied to the one-off data set recorded by the spatially extensive network of passive samplers. We verify the assumptions underlying the model procedure and demonstrate that model uncertainty complies with the EU-quality objectives for air-quality monitoring. Our approach allows a considerable cost optimization of passive sampler campaigns and removes a critical bottleneck for citizen-derived data to be used for compliance checking and air-quality policy use.


Assuntos
Poluentes Atmosféricos , Poluição do Ar , Poluentes Atmosféricos/análise , Poluição do Ar/análise , Ciência do Cidadão , Monitoramento Ambiental , Dióxido de Nitrogênio/análise , Políticas
14.
Environ Sci Technol ; 53(13): 7494-7503, 2019 07 02.
Artigo em Inglês | MEDLINE | ID: mdl-31149818

RESUMO

Oxygen depletion in coastal waters may lead to release of toxic sulfide from sediments. Cable bacteria can limit sulfide release by promoting iron oxide formation in sediments. Currently, it is unknown how widespread this phenomenon is. Here, we assess the abundance, activity, and biogeochemical impact of cable bacteria at 12 Baltic Sea sites. Cable bacteria were mostly absent in sediments overlain by anoxic and sulfidic bottom waters, emphasizing their dependence on oxygen or nitrate as electron acceptors. At sites that were temporarily reoxygenated, cable bacterial densities were low. At seasonally hypoxic sites, cable bacterial densities correlated linearly with the supply of sulfide. The highest densities were observed at Gulf of Finland sites with high rates of sulfate reduction. Microelectrode profiles of sulfide, oxygen, and pH indicated low or no in situ cable bacteria activity at all sites. Reactivation occurred within 5 days upon incubation of an intact sediment core from the Gulf of Finland with aerated overlying water. We found no relationship between cable bacterial densities and macrofaunal abundances, salinity, or sediment organic carbon. Our geochemical data suggest that cable bacteria promote conversion of iron monosulfides to iron oxides in the Gulf of Finland in spring, possibly explaining why bottom waters in this highly eutrophic region rarely contain sulfide in summer.


Assuntos
Bactérias , Sedimentos Geológicos , Países Bálticos , Finlândia , Sulfetos
15.
Environ Microbiol ; 20(8): 3031-3041, 2018 08.
Artigo em Inglês | MEDLINE | ID: mdl-29971901

RESUMO

Cable bacteria have been reported in sediments from marine and freshwater locations, but the environmental factors that regulate their growth in natural settings are not well understood. Most prominently, the physiological limit of cable bacteria in terms of oxygen availability remains poorly constrained. In this study, we investigated the presence, activity and diversity of cable bacteria in relation to a natural gradient in bottom water oxygenation in a depth transect of the Eastern Gotland Basin (Baltic Sea). Cable bacteria were identified by FISH at the oxic and transiently oxic sites, but not at the permanently anoxic site. Three species of the candidate genus Electrothrix, i.e. marina, aarhusiensis and communis were found coexisting within one site. The highest filament density (33 m cm-2 ) was associated with a 6.3 mm wide zone depleted in both oxygen and free sulphide, and the presence of an electric field resulting from the electrogenic sulphur oxidizing metabolism of cable bacteria. However, the measured filament densities and metabolic activities remained low overall, suggesting a limited impact of cable bacteria at the basin level. The observed bottom water oxygen levels (< 5 µM) are the lowest so far reported for cable bacteria, thus expanding their known environmental distribution.


Assuntos
Bactérias/metabolismo , Sedimentos Geológicos/microbiologia , Oxigênio/análise , Água do Mar/microbiologia , Bactérias/química , Bactérias/isolamento & purificação , Países Bálticos , Água Doce/análise , Água Doce/microbiologia , Sedimentos Geológicos/química , Oxirredução , Oxigênio/metabolismo , Água do Mar/análise , Sulfetos/metabolismo
16.
Proc Natl Acad Sci U S A ; 112(43): 13278-83, 2015 Oct 27.
Artigo em Inglês | MEDLINE | ID: mdl-26446670

RESUMO

Seasonal oxygen depletion (hypoxia) in coastal bottom waters can lead to the release and persistence of free sulfide (euxinia), which is highly detrimental to marine life. Although coastal hypoxia is relatively common, reports of euxinia are less frequent, which suggests that certain environmental controls can delay the onset of euxinia. However, these controls and their prevalence are poorly understood. Here we present field observations from a seasonally hypoxic marine basin (Grevelingen, The Netherlands), which suggest that the activity of cable bacteria, a recently discovered group of sulfur-oxidizing microorganisms inducing long-distance electron transport, can delay the onset of euxinia in coastal waters. Our results reveal a remarkable seasonal succession of sulfur cycling pathways, which was observed over multiple years. Cable bacteria dominate the sediment geochemistry in winter, whereas, after the summer hypoxia, Beggiatoaceae mats colonize the sediment. The specific electrogenic metabolism of cable bacteria generates a large buffer of sedimentary iron oxides before the onset of summer hypoxia, which captures free sulfide in the surface sediment, thus likely preventing the development of bottom water euxinia. As cable bacteria are present in many seasonally hypoxic systems, this euxinia-preventing firewall mechanism could be widely active, and may explain why euxinia is relatively infrequently observed in the coastal ocean.


Assuntos
Sedimentos Geológicos/química , Sedimentos Geológicos/microbiologia , Ferro/análise , Estações do Ano , Água do Mar/química , Sulfetos/análise , Thiotrichaceae/metabolismo , Anaerobiose , Microeletrodos , Países Baixos , Oxirredução , Salinidade , Temperatura
17.
Appl Environ Microbiol ; 83(10)2017 05 15.
Artigo em Inglês | MEDLINE | ID: mdl-28314724

RESUMO

Seasonal hypoxia in coastal systems drastically changes the availability of electron acceptors in bottom water, which alters the sedimentary reoxidation of reduced compounds. However, the effect of seasonal hypoxia on the chemolithoautotrophic community that catalyzes these reoxidation reactions is rarely studied. Here, we examine the changes in activity and structure of the sedimentary chemolithoautotrophic bacterial community of a seasonally hypoxic saline basin under oxic (spring) and hypoxic (summer) conditions. Combined 16S rRNA gene amplicon sequencing and analysis of phospholipid-derived fatty acids indicated a major temporal shift in community structure. Aerobic sulfur-oxidizing Gammaproteobacteria (Thiotrichales) and Epsilonproteobacteria (Campylobacterales) were prevalent during spring, whereas Deltaproteobacteria (Desulfobacterales) related to sulfate-reducing bacteria prevailed during summer hypoxia. Chemolithoautotrophy rates in the surface sediment were three times higher in spring than in summer. The depth distribution of chemolithoautotrophy was linked to the distinct sulfur oxidation mechanisms identified through microsensor profiling, i.e., canonical sulfur oxidation, electrogenic sulfur oxidation by cable bacteria, and sulfide oxidation coupled to nitrate reduction by Beggiatoaceae The metabolic diversity of the sulfur-oxidizing bacterial community suggests a complex niche partitioning within the sediment, probably driven by the availability of reduced sulfur compounds (H2S, S0, and S2O32-) and electron acceptors (O2 and NO3-) regulated by seasonal hypoxia.IMPORTANCE Chemolithoautotrophic microbes in the seafloor are dependent on electron acceptors, like oxygen and nitrate, that diffuse from the overlying water. Seasonal hypoxia, however, drastically changes the availability of these electron acceptors in the bottom water; hence, one expects a strong impact of seasonal hypoxia on sedimentary chemolithoautotrophy. A multidisciplinary investigation of the sediments in a seasonally hypoxic coastal basin confirms this hypothesis. Our data show that bacterial community structure and chemolithoautotrophic activity varied with the seasonal depletion of oxygen. Unexpectedly, the dark carbon fixation was also dependent on the dominant microbial pathway of sulfur oxidation occurring in the sediment (i.e., canonical sulfur oxidation, electrogenic sulfur oxidation by cable bacteria, and sulfide oxidation coupled to nitrate reduction by Beggiatoaceae). These results suggest that a complex niche partitioning within the sulfur-oxidizing bacterial community additionally affects the chemolithoautotrophic community of seasonally hypoxic sediments.


Assuntos
Bactérias/metabolismo , Sedimentos Geológicos/microbiologia , Oxigênio/metabolismo , Bactérias/classificação , Bactérias/genética , Bactérias/isolamento & purificação , Biodiversidade , Crescimento Quimioautotrófico , Sedimentos Geológicos/química , Oxirredução , Oxigênio/análise , Filogenia , Estações do Ano , Enxofre/metabolismo
18.
Glob Chang Biol ; 23(12): 5344-5357, 2017 12.
Artigo em Inglês | MEDLINE | ID: mdl-28776870

RESUMO

Accelerated mass loss from the Greenland ice sheet leads to glacier retreat and an increasing input of glacial meltwater to the fjords and coastal waters around Greenland. These high latitude ecosystems are highly productive and sustain important fisheries, yet it remains uncertain how they will respond to future changes in the Arctic cryosphere. Here we show that marine-terminating glaciers play a crucial role in sustaining high productivity of the fjord ecosystems. Hydrographic and biogeochemical data from two fjord systems adjacent to the Greenland ice sheet, suggest that marine ecosystem productivity is very differently regulated in fjords influenced by either land-terminating or marine-terminating glaciers. Rising subsurface meltwater plumes originating from marine-terminating glaciers entrain large volumes of ambient deep water to the surface. The resulting upwelling of nutrient-rich deep water sustains a high phytoplankton productivity throughout summer in the fjord with marine-terminating glaciers. In contrast, the fjord with only land-terminating glaciers lack this upwelling mechanism, and is characterized by lower productivity. Data on commercial halibut landings support that coastal regions influenced by large marine-terminating glaciers have substantially higher marine productivity. These results suggest that a switch from marine-terminating to land-terminating glaciers can substantially alter the productivity in the coastal zone around Greenland with potentially large ecological and socio-economic implications.


Assuntos
Estuários , Camada de Gelo , Água do Mar , Animais , Regiões Árticas , Ecossistema , Monitoramento Ambiental , Água Doce , Groenlândia , Fitoplâncton/crescimento & desenvolvimento
19.
Biol Lett ; 13(4)2017 04.
Artigo em Inglês | MEDLINE | ID: mdl-28381634

RESUMO

Negative emission technologies (NETs) target the removal of carbon dioxide (CO2) from the atmosphere, and are being actively investigated as a strategy to limit global warming to within the 1.5-2°C targets of the 2015 UN climate agreement. Enhanced silicate weathering (ESW) proposes to exploit the natural process of mineral weathering for the removal of CO2 from the atmosphere. Here, we discuss the potential of applying ESW in coastal environments as a climate change mitigation option. By deliberately introducing fast-weathering silicate minerals onto coastal sediments, alkalinity is released into the overlying waters, thus creating a coastal CO2 sink. Compared with other NETs, coastal ESW has the advantage that it counteracts ocean acidification, does not interfere with terrestrial land use and can be directly integrated into existing coastal management programmes with existing (dredging) technology. Yet presently, the concept is still at an early stage, and so two major research challenges relate to the efficiency and environmental impact of ESW. Dedicated experiments are needed (i) to more precisely determine the weathering rate under in situ conditions within the seabed and (ii) to evaluate the ecosystem impacts-both positive and negative-from the released weathering products.


Assuntos
Tempo (Meteorologia) , Dióxido de Carbono , Mudança Climática , Silicatos
20.
Environ Sci Technol ; 51(7): 3960-3972, 2017 04 04.
Artigo em Inglês | MEDLINE | ID: mdl-28281750

RESUMO

Enhanced weathering of (ultra)basic silicate rocks such as olivine-rich dunite has been proposed as a large-scale climate engineering approach. When implemented in coastal environments, olivine weathering is expected to increase seawater alkalinity, thus resulting in additional CO2 uptake from the atmosphere. However, the mechanisms of marine olivine weathering and its effect on seawater-carbonate chemistry remain poorly understood. Here, we present results from batch reaction experiments, in which forsteritic olivine was subjected to rotational agitation in different seawater media for periods of days to months. Olivine dissolution caused a significant increase in alkalinity of the seawater with a consequent DIC increase due to CO2 invasion, thus confirming viability of the basic concept of enhanced silicate weathering. However, our experiments also identified several important challenges with respect to the detailed quantification of the CO2 sequestration efficiency under field conditions, which include nonstoichiometric dissolution, potential pore water saturation in the seabed, and the potential occurrence of secondary reactions. Before enhanced weathering of olivine in coastal environments can be considered an option for realizing negative CO2 emissions for climate mitigation purposes, these aspects need further experimental assessment.


Assuntos
Dióxido de Carbono , Solubilidade , Carbonatos , Água do Mar , Tempo (Meteorologia)
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