Denitrification in foraminifera has an ancient origin and is complemented by associated bacteria.

Benthic foraminifera are unicellular eukaryotes that inhabit sediments of aquatic environments. Several foraminifera of the order Rotaliida are known to store and use nitrate for denitrification, a unique energy metabolism among eukaryotes. The rotaliid Globobulimina spp. has been shown to encode an incomplete denitrification pathway of bacterial origin. However, the prevalence of denitrification genes in foraminifera remains unknown, and the missing denitrification pathway components are elusive. Analyzing transcriptomes and metagenomes of 10 foraminiferal species from the Peruvian oxygen minimum zone, we show that denitrification genes are highly conserved in foraminifera. We infer the last common ancestor of denitrifying foraminifera, which enables us to predict the ability to denitrify for additional foraminiferal species. Additionally, an examination of the foraminiferal microbiota reveals evidence for a stable interaction with Desulfobacteraceae, which harbor genes that complement the foraminiferal denitrification pathway. Our results provide evidence that foraminiferal denitrification is complemented by the foraminifera-associated microbiome. The interaction of foraminifera with their resident bacteria is at the basis of foraminiferal adaptation to anaerobic environments that manifested in ecological success in oxygen depleted habitats.

Rapid aggregation of biofilm-covered microplastics with marine biogenic particles.

Ocean plastic pollution has resulted in a substantial accumulation of microplastics in the marine environment. Today, this plastic litter is ubiquitous in the oceans, including even remote habitats such as deep-sea sediments and polar sea ice, and it is believed to pose a threat to ecosystem health. However, the concentration of microplastics in the surface layer of the oceans is considerably lower than expected, given the ongoing replenishment of microplastics and the tendency of many plastic types to float. It has been hypothesized that microplastics leave the upper ocean by aggregation and subsequent sedimentation. We tested this hypothesis by investigating the interactions of microplastics with marine biogenic particles collected in the southwestern Baltic Sea. Our laboratory experiments revealed a large potential of microplastics to rapidly coagulate with biogenic particles, which substantiates this hypothesis. Together with the biogenic particles, the microplastics efficiently formed pronounced aggregates within a few days. The aggregation of microplastics and biogenic particles was significantly accelerated by microbial biofilms that had formed on the plastic surfaces. We assume that the demonstrated aggregation behaviour facilitates the export of microplastics from the surface layer of the oceans and plays an important role in the redistribution of microplastics in the oceans.

Material gradients in fibrillar insect attachment systems: the role of joint-like elements.

Insects have developed elaborate fibrillar (or hairy) attachment systems that allow them to attach reliably on a variety of different and unpredictable surfaces. These hairy adhesive pads consist of fine and long surface outgrowths (setae), terminated by thin plate-like tips of different shapes. Besides structural adaptations, recent work revealed material gradients along the length of the setae with spatula-shaped and pointed tip structures. It was shown that these setae have a rigid base and soft setal tips, which is assumed to enhance the adaptability to rough surfaces and prevent clustering of the setae. Here, we show a not yet described type of material gradient found in discoidal (or mushroom-shaped) setae of male leaf beetles. In contrast to the previously shown gradient, the setal tips and the basal and central seta sections are composed of relatively stiff chitinous materials, whereas the transition zones between the central seta sections and the setal tips contain large proportions of the rather soft and elastic protein resilin, forming a joint-like element. Having performed adhesion measurements with artificial macroscopic mushroom-shaped adhesive structures with different implemented joint-like elements, we show that the main functional role of these joint-like elements is to facilitate the adaptability to uneven and non-parallel substrates, rather than to provide detachment tolerance towards pull-off forces applied under various tilt angles.

Resilin-like protein in the clamp sclerites of the gill monogenean Diplozoon paradoxum Nordmann, 1832.

Resilin is a soft and elastic protein, which is found in many exoskeletal structures of arthropods. Proteins with similar chemical properties have been described for other invertebrates including monogenean fish parasites. However, for the latter taxon no clear microscopic evidence for a resilin-like protein has been shown so far. Here, we present the results of detailed microscopic analyses of the clamp sclerites (attachment devices) of the monogenean Diplozoon paradoxum. Toluidine blue, which is known to stain resilin, selectively stained the material in the clamp sclerites. In addition, when exposed to UV light, this material exhibited an intense blue autofluorescence. The emission spectrum of this autofluorescence has its maximum at 424 nm and is nearly identical to emission spectra of blue autofluorescences observed in 2 well-studied structures containing high proportions of resilin in the exoskeleton of the locust Schistocerca gregaria. The results strongly indicate that the sclerite material of D. paradoxum contains a resilin-like protein. The presence of such a protein likely enhances the attachment efficiency of the clamp sclerites and increases their lifetime.

Bacterial c-di-GMP has a key role in establishing host-microbe symbiosis.

Most microbes evolve faster than their hosts and should therefore drive evolution of host-microbe interactions. However, relatively little is known about the characteristics that define the adaptive path of microbes to host association. Here we identified microbial traits that mediate adaptation to hosts by experimentally evolving the free-living bacterium Pseudomonas lurida with the nematode Caenorhabditis elegans as its host. After ten passages, we repeatedly observed the evolution of beneficial host-specialist bacteria, with improved persistence in the nematode being associated with increased biofilm formation. Whole-genome sequencing revealed mutations that uniformly upregulate the bacterial second messenger, cyclic diguanylate (c-di-GMP). We subsequently generated mutants with upregulated c-di-GMP in different Pseudomonas strains and species, which consistently increased host association. Comparison of pseudomonad genomes from various environments revealed that c-di-GMP underlies adaptation to a variety of hosts, from plants to humans. This study indicates that c-di-GMP is fundamental for establishing host association.

Exploring Effects of C. elegans Protective Natural Microbiota on Host Physiology.

The Caenorhabditis elegans natural microbiota was described only recently. Thus, our understanding of its effects on nematode physiology is still in its infancy. We previously showed that the C. elegans natural microbiota isolates Pseudomonas lurida MYb11 and P. fluorescens MYb115 protect the worm against pathogens such as Bacillus thuringiensis (Bt). However, the overall effects of the protective microbiota on worm physiology are incompletely understood. Here, we investigated how MYb11 and MYb115 affect C. elegans lifespan, fertility, and intestinal colonization. We further studied the capacity of MYb11 and MYb115 to protect the worm against purified Bt toxins. We show that while MYb115 and MYb11 affect reproductive timing and increase early reproduction only MYb11 reduces worm lifespan. Moreover, MYb11 aggravates killing upon toxin exposure. We conclude that MYb11 has a pathogenic potential in some contexts. This work thus highlights that certain C. elegans microbiota members can be beneficial and costly to the host in a context-dependent manner, blurring the line between good and bad.

Have female twisted-wing parasites (Insecta: Strepsiptera) evolved tolerance traits as response to traumatic penetration?

Traumatic insemination describes an unusual form of mating during which a male penetrates the body wall of its female partner to inject sperm. Females unable to prevent traumatic insemination have been predicted to develop either traits of tolerance or of resistance, both reducing the fitness costs associated with the male-inflicted injury. The evolution of tolerance traits has previously been suggested for the bed bug. Here we present data suggesting that tolerance traits also evolved in females of the twisted-wing parasite species Stylops ovinae and Xenos vesparum. Using micro-indentation experiments and confocal laser scanning microscopy, we found that females of both investigated species possess a uniform resilin-rich integument that is notably thicker at penetration sites than at control sites. As the thickened cuticle does not seem to hamper penetration by males, we hypothesise that thickening of the cuticle resulted in reduced penetration damage and loss of haemolymph and in improved wound sealing. To evaluate the evolutionary relevance of the Stylops-specific paragenital organ and penis shape variation in the context of inter- and intraspecific competition, we conducted attraction and interspecific mating experiments, as well as a geometric-morphometric analysis of S. ovinae and X. vesparum penises. We found that S. ovinae females indeed attract sympatrically distributed congeneric males. However, only conspecific males were able to mate. In contrast, we did not observe any heterospecific male attraction by Xenos females. We therefore hypothesise that the paragenital organ in the genus Stylops represents a prezygotic mating barrier that prevents heterospecific matings.

Position-resolved determination of trace elements in mandibular gnathobases of the Antarctic copepod Calanoides acutus using a multimethod approach.

Previous studies have revealed silica formation in the teeth of mandibular gnathobases of copepods while significant amounts of zinc and copper are present, which might improve mechanical stability of the teeth and represent an adaptation to compact food particles. The present study aimed at analysing the distribution and concentration of trace elements in the mandibular gnathobases of females of the Antarctic copepod species Calanoides acutus. Because of the low overall masses of few micrograms per specimen the application of a combination of position-resolved micro-beam techniques was necessary and micro-particle-induced X-ray emission spectrometry and laser ablation inductively coupled plasma mass spectrometry were used to determine Ba, Br, Ca, Cl, Cu, Fe, K, Mg, Na, Ni, P, S, Si and Zn in the samples with µm to sub-µm resolution. Calibration strategies were optimised to fit for the carbonate matrix. The analyses revealed a distinct enrichment of Br, Ca, Fe, K, S, Si and Zn in the teeth of the gnathobases.

Coupling wings with movable hooks - resilin in the wing-interlocking structures of honeybees.

Hymenoptera are characterised by the presence of one forewing pair and one hindwing pair. The two wings of each body side are coupled to each other during flight making the morphologically four-winged insects functionally two-winged. This coupling is formed by a row of hook-like structures, called hamuli, that are located at the leading edge of the hindwing and interlock with a thickened and recurved margin present at the trailing edge of the forewing. In this study, autofluorescence analyses performed with confocal laser scanning microscopy revealed differences in the exoskeleton material composition of the interlocking structures. While the wing veins and the recurved margin are strongly sclerotised and chitinous, the wing membranes mainly contain the elastomeric protein resilin. The hamuli are composed of sclerotised chitinous material, and each hamulus base is surrounded by and embedded in material that features large proportions of resilin and is located in strongly sclerotised socket-like wing vein structures. This exoskeleton organisation likely allows movements of the hamuli and, in combination with the exoskeleton material gradients visualized in the other interlocking structures, is assumed to guarantee an effective wing coupling and to simultaneously decrease the risk of wear and damage under mechanical loads occurring in flight, coupling and decoupling situations.

Microbial Strategies for Survival in the Glass Sponge Vazella pourtalesii.

Few studies have explored the microbiomes of glass sponges (Hexactinellida). The present study seeks to elucidate the composition of the microbiota associated with the glass sponge Vazella pourtalesii and the functional strategies of the main symbionts. We combined microscopic approaches with metagenome-guided microbial genome reconstruction and amplicon community profiling toward this goal. Microscopic imaging revealed that the host and microbial cells appeared within dense biomass patches that are presumably syncytial tissue aggregates. Based on abundances in amplicon libraries and metagenomic data, SAR324 bacteria, Crenarchaeota, Patescibacteria, and Nanoarchaeota were identified as abundant members of the V. pourtalesii microbiome; thus, their genomic potentials were analyzed in detail. A general pattern emerged in that the V. pourtalesii symbionts had very small genome sizes, in the range of 0.5 to 2.2 Mb, and low GC contents, even below those of seawater relatives. Based on functional analyses of metagenome-assembled genomes (MAGs), we propose two major microbial strategies: the "givers," namely, Crenarchaeota and SAR324, heterotrophs and facultative anaerobes, produce and partly secrete all required amino acids and vitamins. The "takers," Nanoarchaeota and Patescibacteria, are anaerobes with reduced genomes that tap into the microbial community for resources, e.g., lipids and DNA, likely using pilus-like structures. We posit that the existence of microbial cells in sponge syncytia together with the low-oxygen conditions in the seawater environment are factors that shape the unique compositional and functional properties of the microbial community associated with V. pourtalesii IMPORTANCE We investigated the microbial community of V. pourtalesii that forms globally unique, monospecific sponge grounds under low-oxygen conditions on the Scotian Shelf, where it plays a key role in its vulnerable ecosystem. The microbial community was found to be concentrated within biomass patches and is dominated by small cells (<1 µm). MAG analyses showed consistently small genome sizes and low GC contents, which is unusual compared to known sponge symbionts. These properties, as well as the (facultatively) anaerobic metabolism and a high degree of interdependence between the dominant symbionts regarding amino acid and vitamin synthesis, are likely adaptations to the unique conditions within the syncytial tissue of their hexactinellid host and the low-oxygen environment.

Structure and biomechanics of the antennal grooming mechanism in the southern green stink bug Nezara viridula.

Insects devote a large amount of time to self-groom to remove foreign material, especially from their sensory appendages. Using various microscopy techniques and behavioural experiments on intact and ablated insects, the present study investigates the antennal grooming of the southern green stinkbug Nezara viridula, which represents a serious pest of different crops in most areas of the world. The antennal grooming behaviour encompasses an action of scraping involving the tibial comb complex (tibial comb + fossula) of both forelegs, generally followed by the tibial comb complex grooming of one leg using the tarsal hairy adhesive pad of the opposite leg (rubbing). From our observations, we can exclude a role in the antennal grooming of other structures such as the foretibial apparatus, while we show an involvement of this last structure in repositioning the stylets inside the labium. The external and internal morphology (cryo-scanning and transmission electron microscopy) and the evidence for the presence of large proportions of the elastic protein resilin (confocal laser scanning microscopy) in some parts of both the tibial comb complex and the foretibial apparatus are shown, and their functional roles are discussed. For the first time we demonstrated here the multipurpose role of the basitarsal hairy adhesive pad that is involved in both antennal grooming and adhesion to the substrate.

Sperm transfer through hyper-elongated beetle penises - morphology and theoretical approaches.

Many insects possess a hyper-elongated intromittent organ with a diameter of only a few micrometers. Using morphological and theoretical approaches, we investigated the biomechanics of sperm transfer through such organs by calculating (1) how far and how fast sperm could fill in the penis by capillary action, (2) how much capillary pressure is generated in the penis, and (3) how much pressure is needed to pump sperm out of the penis. The results enabled us to propose the following hypotheses: (1) penile filling basically occurs by capillary action, and (2) sperm transport to females occurs by contracting the sperm pump muscles or by active propulsion of spermatozoa. Potential experimental approaches to test these hypotheses are discussed.

Red-headed Amazon River Turtles in Venezuela and Colombia: population separation and connection along the famous route of Alexander von Humboldt.

Podocnemis erythrocephala, the Red-headed Amazon River Turtle, is distributed in the Amazon and Orinoco basins where it predominantly inhabits blackwater and has never been found in whitewater. The only permanent river connection between the habitats in the different river basins features considerable whitewater proportions and, therefore, is hypothesised to be a dispersal barrier for this turtle species. By using variable neutral nuclear and mitochondrial markers (microsatellite loci and control region sequences), the present study assessed the genetic structure, genetic diversity, gene flow and historical biogeography of P. erythrocephala populations in Venezuela and Colombia in the Brazo Casiquiare (Amazon basin) and in the Ríos Atabapo and Inírida (Orinoco basin). The results clearly indicate a pronounced genetic differentiation between the Amazon basin populations and the Orinoco basin populations suggesting that a vicariant event separated the ancestors of the Orinoco basin populations. Several identified private mitochondrial DNA haplotypes and microsatellite alleles as well as a high genetic diversity observed in the Orinoco basin populations suggest that the Orinoco basin represents a historical blackwater refugium of P. erythrocephala. Analyses of past demographic processes revealed old bottlenecks and recent expansion. Historical and contemporary non-directional gene flow between the populations in the different river basins were identified and are supposed to have taken place via ephemeral inter-basin blackwater connections that might have formed at various locations, one of them being located on the famous travelling route of Alexander von Humboldt. The P. erythrocephala populations in the Ríos Atabapo and Inírida should together be considered as an evolutionarily significant unit, and each of them should be classified as an independent management unit for conservation.

Tarsal attachment devices of the southern green stink bug Nezara viridula (Heteroptera: Pentatomidae).

Based on analyses with cryo-scanning and transmission electron microscopy, the present study reports on the morphology and ultrastructure of the attachment structures of the green stinkbug Nezara viridula L. (Heteroptera: Pentatomidae), a cosmopolitan pest of different crops in most areas of the world. In addition, the presence and distribution of large proportions of the elastic protein resilin in these structures was revealed by confocal laser scanning microscopy. The attachment structures of each leg comprise two sclerotised claws, a pair of smooth flexible pulvilli and a hairy adhesive pad located at the ventral side of the basitarsus. No sexual dimorphism is evident. Contact areas of resting individuals on a smooth surface show that N. viridula creates contact to the substrate with the ventral surface of (a) the distal portions of the pulvilli, (b) the setae of the hairy adhesive pad, (c) the two paraempodia representing mechanosensory setae, and (d) the tips of the claws. Each pulvillus is a sac-like structure formed by complex cuticular layers that vary in their structure and resilin content. The dorsal side consists of sclerotised chitinous material, while the ventral cuticle consists mainly of resilin and shows a very thin epicuticle and a thick exocuticle. The setae of the hairy adhesive pad are pointed and socketed. They exhibit a pronounced longitudinal gradient in the material composition, with large proportions of resilin being present in the setal tips. In most of these setae, especially in those of the distal-most part of the pad, also a transverse gradient in the material composition is visible.

A Novel Eukaryotic Denitrification Pathway in Foraminifera.

Benthic foraminifera are unicellular eukaryotes inhabiting sediments of aquatic environments. Several species were shown to store and use nitrate for complete denitrification, a unique energy metabolism among eukaryotes. The population of benthic foraminifera reaches high densities in oxygen-depleted marine habitats, where they play a key role in the marine nitrogen cycle. However, the mechanisms of denitrification in foraminifera are still unknown, and the possibility of a contribution of associated bacteria is debated. Here, we present evidence for a novel eukaryotic denitrification pathway that is encoded in foraminiferal genomes. Large-scale genome and transcriptomes analyses reveal the presence of a denitrification pathway in foraminifera species of the genus Globobulimina. This includes the enzymes nitrite reductase (NirK) and nitric oxide reductase (Nor) as well as a wide range of nitrate transporters (Nrt). A phylogenetic reconstruction of the enzymes' evolutionary history uncovers evidence for an ancient acquisition of the foraminiferal denitrification pathway from prokaryotes. We propose a model for denitrification in foraminifera, where a common electron transport chain is used for anaerobic and aerobic respiration. The evolution of hybrid respiration in foraminifera likely contributed to their ecological success, which is well documented in palaeontological records since the Cambrian period.

Synthesis of anthraquinone oligonucleotides for triplex stabilization.

The synthesis of two anthraquinone phosphoramidites is described. In both cases the anthraquinone moiety is attached via a linker to the 5-position of a uracil base, allowing incorporation at any thymidine position in an oligonucleotide sequence. Anthraquinone-modified oligonucleotides have potential applications as triplex stabilizers and fluorescence quenchers.

Functional morphology and evolution of the hyper-elongated intromittent organ in Cassida leaf beetles (Coleoptera: Chrysomelidae: Cassidinae).

The peculiar phenomenon of hyper-elongation of intromittent organs is well known in a number of insect groups. However, the unresolved questions of how and why such a phenomenon originated independently many times continue to attract biologists' attention. To be able to detect the evolutionary driving mechanisms that enabled insects to repeatedly acquire such a peculiarity, first of all the structural key features and the mechanics of these organs have to be determined. In the present study, the morphology of the reproductive organs of two species of the beetle genus Cassida, with a special focus on the male structures, was scrutinised in detail during copulation and at rest using different microscopy techniques. We found that the hyper-elongated structure of the intromittent organ, called flagellum, is part of the male ejaculatory duct. When the flagellum is inserted into the female spermathecal duct, longitudinal muscles of the ejaculatory duct, but not the flagellum, are shortened. These results strongly suggest that the contraction of the longitudinal muscles of the ejaculatory duct causes propulsion of the flagellum into the highly spiralled spermathecal duct of the female. The tip of the cuticular flagellum is curled up, which can suggest that its physical properties differ from those of the rest of the flagellum. Considering the preceding modelling studies, this property aids the flagellum in penetrating within the highly spiralled and very variable female duct. Based on our morphological results and in comparison with the morphology of intromittent organs of other beetles, we discuss the evolutionary origin of the hyper-elongation in the Cassida species and propose a hypothesis that explains the independent origin of the hyper-elongation of intromittent organs.

Functional diversity of resilin in Arthropoda.

Resilin is an elastomeric protein typically occurring in exoskeletons of arthropods. It is composed of randomly orientated coiled polypeptide chains that are covalently cross-linked together at regular intervals by the two unusual amino acids dityrosine and trityrosine forming a stable network with a high degree of flexibility and mobility. As a result of its molecular prerequisites, resilin features exceptional rubber-like properties including a relatively low stiffness, a rather pronounced long-range deformability and a nearly perfect elastic recovery. Within the exoskeleton structures, resilin commonly forms composites together with other proteins and/or chitin fibres. In the last decades, numerous exoskeleton structures with large proportions of resilin and various resilin functions have been described. Today, resilin is known to be responsible for the generation of deformability and flexibility in membrane and joint systems, the storage of elastic energy in jumping and catapulting systems, the enhancement of adaptability to uneven surfaces in attachment and prey catching systems, the reduction of fatigue and damage in reproductive, folding and feeding systems and the sealing of wounds in a traumatic reproductive system. In addition, resilin is present in many compound eye lenses and is suggested to be a very suitable material for optical elements because of its transparency and amorphousness. The evolution of this remarkable functional diversity can be assumed to have only been possible because resilin exhibits a unique combination of different outstanding properties.

Mandibular gnathobases of marine planktonic copepods - feeding tools with complex micro- and nanoscale composite architectures.

Copepods are dominant members of the marine zooplankton. Their diets often comprise large proportions of diatom taxa whose silicified frustules are mechanically stable and offer protection against grazers. Despite of this protection, many copepod species are able to efficiently break even the most stable frustule types. This ability requires specific feeding tools with mechanically adapted architectures, compositions and properties. When ingesting food, the copepods use the gnathobases of their mandibles to grab and, if necessary, crush and mince the food items. The morphology of these gnathobases is related to the diets of the copepods. Gnathobases of copepod species that mainly feed on phytoplankton feature compact and stable tooth-like structures, so-called teeth. In several copepod species these gnathobase teeth have been found to contain silica. Recent studies revealed that the siliceous teeth are complex microscale composites with silica-containing cap-like structures located on chitinous exoskeleton sockets that are connected with rubber-like bearings formed by structures with high proportions of the soft and elastic protein resilin. In addition, the silica-containing cap-like structures exhibit a nanoscale composite architecture. They contain some amorphous silica and large proportions of the crystalline silica type α-cristobalite and are pervaded by a fine chitinous fibre network that very likely serves as a scaffold during the silicification process. All these intricate composite structures are assumed to be the result of a coevolution between the copepod gnathobases and diatom frustules in an evolutionary arms race. The composites very likely increase both the performance of the siliceous teeth and their resistance to mechanical damage, and it is conceivable that their development has favoured the copepods' dominance of the marine zooplankton observed today.

Functional morphology of the male caudal appendages of the damselfly Ischnura elegans (Zygoptera: Coenagrionidae).

Odonata are usually regarded as one of the most ancient extant lineages of winged insects. Their copulatory apparatus and mating behavior are unique among insects. Male damselflies use their caudal appendages to clasp the female's prothorax during both copulation and egg-laying and have a secondary copulatory apparatus for sperm transfer. Knowledge of the functional morphology of the male caudal appendages is the basis for understanding the evolution of these structures in Odonata and respective organs in other insects. However, it is still not exactly known how the zygopteran claspers work. In this study, we applied micro-computed tomography and a variety of microscopy techniques to examine the morphology, surface microstructure, cuticle material composition and muscle topography of the male caudal appendages of Ischnura elegans. The results indicate that the closing of the paraproctal claspers is mainly passive. This indirect closing mechanism is very likely supported by high proportions of the elastic protein resilin present in the cuticle of the paraproctal bases. In addition, the prothoracic morphology of the female plays an important role in the indirect closing of the male claspers. Our data indicate that both structures - the male claspers and the female prothoracic hump - function together like a snap-fastener.