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1.
Biomacromolecules ; 20(1): 443-453, 2019 01 14.
Artigo em Inglês | MEDLINE | ID: mdl-30525515

RESUMO

Cellulose fibers can be freed from the cell-wall skeleton via high-shear homogenization, to produce cellulose nanofibers (CNF) that can be used, for example, as the reinforcing phase in composite materials. Nanofiber production from agro-industrial byproducts normally involves harsh chemical-pretreatments and high temperatures to remove noncellulosic polysaccharides (20-70% of dry weight). However, this is expensive for large-scale processing and environmentally damaging. An enzyme-only pretreatment to obtain CNF from agro-industrial byproducts (potato and sugar beet) was developed with targeted commercial enzyme mixtures. It is hypothesized that cellulose can be isolated from the biomass, using enzymes only, due to the low lignin content, facilitating greater liberation of CNF via high-shear homogenization. Comprehensive Microarray Polymer Profiling (CoMPP) measured remaining extractable polysaccharides, showing that the enzyme-pretreatment was more successful at removing noncellulosic polysaccharides than alkaline- or acid-hydrolysis alone. While effective alone, the effect of the enzyme-pretreatment was bolstered via combination with a mild high-pH pretreatment. Dynamic rheology was used to estimate the proportion of CNF in resultant suspensions. Enzyme-pretreated suspensions showed 4-fold and 10-fold increases in the storage modulus for potato and sugar beet, respectively, compared to untreated samples. A greener yet facile method for producing CNF from vegetable waste is presented here.


Assuntos
Biotecnologia/métodos , Celulose/análogos & derivados , Resíduos Industriais , Nanofibras/química , Verduras/química , Beta vulgaris/química , Biocatálise , Hidrólise , Solanum tuberosum/química
2.
J Eukaryot Microbiol ; 66(6): 937-953, 2019 11.
Artigo em Inglês | MEDLINE | ID: mdl-31188511

RESUMO

The external morphology and internal cell fine structure of a new species of Tovelliaceae, Tovellia rubescens n. sp., is described. Phylogenetic analyses based on partial LSU rDNA sequences place the new species in a clade containing Tovellia species that accumulate red pigments and identify T. aveirensis as its closest known relative. Cells of T. rubescens n. sp. were mostly round and had the cingulum located near the middle, with its ends displaced about one cingular width. Small numbers of distinctly flat cells appeared in culture batches; their significance could not be determined. Cells of the new species in culture batches progressively changed from a yellowish-green, mainly due to chloroplast colour, to a reddish-brown colour that appeared associated with lipid bodies. The switch to a reddish colour happened earlier in batches grown in medium lacking sources of N or P. Pigment analyses by HPLC-MS/MS revealed the presence of astaxanthin and astaxanthin-related metabolites in the new species, but also in T. aveirensis, in which a reddish colour was never observed. The chloroplast arrangement of T. rubescens n. sp. resembled that of T. aveirensis, with lobes radiating from a central pyrenoid complex. The flagellar apparatus and pusular system fell within the general features described from other Tovelliaceae. A row of microtubules interpretable as a microtubular strand of the peduncle was present. Spiny resting cysts with red contents and an ITS sequence identical to that of cultured material of the new species were found in the original locality.


Assuntos
Dinoflagellida/classificação , Cor , DNA de Protozoário/análise , Dinoflagellida/genética , Dinoflagellida/ultraestrutura , Microscopia Eletrônica de Varredura , Microscopia Eletrônica de Transmissão , Filogenia , Lagoas/parasitologia , Portugal
3.
J Phycol ; 53(6): 1223-1240, 2017 12.
Artigo em Inglês | MEDLINE | ID: mdl-28796896

RESUMO

A new marine woloszynskioid dinoflagellate Dactylodinium pterobelotum gen. et sp. nov., collected from a southern Vietnamese estuary, was described on the basis of LM, SEM, and TEM, and molecular phylogeny inferred from rDNA sequences. This species had the smallest number of amphiesmal vesicles (5 latitudinal series) in woloszynskioid dinoflagellates assigned to the Suessiaceae and Borghiellaceae. The eyespot was of type B, composed of osmiophilic globules and brick-like material, located in- and outside of the chloroplast respectively. An apical structure comprised a pair of elongate anterior vesicles (PEV). A large peduncle was conspicuous, located in the sulcal extension in the epicone, and supported by a microtubular strand of ~140 microtubules. Ultrastructural features of trichocysts represent a novel type in the Dinophyceae, bearing lateral hairs besides anterior fibers. The molecular phylogeny based on partial LSU rDNA showed the species in a basal position in the family Suessiaceae; this indicates the eyespot type B and PEV of the Borghiellaceae are ancestral states of the eyespot comprising brick-like material (type E) and an elongate apical vesicle of the Suessiaceae.


Assuntos
Dinoflagellida/classificação , Dinoflagellida/genética , DNA de Protozoário/genética , DNA Ribossômico/genética , Dinoflagellida/citologia , Dinoflagellida/ultraestrutura , Microscopia Eletrônica de Varredura , Microscopia Eletrônica de Transmissão , Filogenia , Análise de Sequência de DNA , Vietnã
4.
J Phycol ; 53(1): 131-145, 2017 02.
Artigo em Inglês | MEDLINE | ID: mdl-27779746

RESUMO

A small (7-11 µm long) dinoflagellate with thin amphiesmal plates was isolated into culture from a water sample collected in coastal waters of Yeosu, southern Korea, and examined by LM, SEM, and TEM, and molecular analyses. The hemispheric episome was smaller than the hyposome. The nucleus was oval and situated from the central to the episomal region of the cell. A large yellowish-brown chloroplast was located at the end of the hyposome, and some small chloroplasts extended into the periphery of the episome. The dinoflagellate had a single elongated apical vesicle (EAV) and a type E eyespot, which are key characteristics of the family Suessiaceae. Unlike other genera in this family, it had two long furrow lines, one on the episome and the other on the hyposome, and encircling the dorsal, and lateral sides of the cell body. The pyrenoid lacked starch sheaths, but tubular invaginations into the pyrenoid matrix from the cytoplasm were observed. In the TEM, the dinoflagellate was observed to have cable-like structures (CLSs) near the eyespot but so far not observed in other dinoflagellates. The SSU rDNA sequences examined were 1.2%-5.1% different from those of other genera in the family Suessiaceae, whereas the LSU (D1-D3) rDNA sequences of this dinoflagellate were 15.1%-31.5% different. The dinoflagellate lacked a 51-bp fragment in domain D2 of the LSU rDNA, but it had an ~100-bp fragment in domain D2. This feature has been found previously only in the genera Leiocephalium and Polarella, two other genera of the Suessiaceae. The molecular phylogeny and sequence divergence based on SSU, and LSU rDNA indicate that the Korean dinoflagellate holds a taxonomically distinctive position and we consider it to be a new species in a new genus in the family Suessiaceae, named Yihiella yeosuensis gen. et sp. nov.


Assuntos
Dinoflagellida/classificação , Dinoflagellida/genética , DNA de Algas/genética , DNA de Protozoário/genética , DNA Ribossômico/genética , Dinoflagellida/citologia , Dinoflagellida/ultraestrutura , Microscopia Eletrônica de Transmissão , Filogenia , República da Coreia , Especificidade da Espécie
5.
J Phycol ; 57(2): 393-395, 2021 04.
Artigo em Inglês | MEDLINE | ID: mdl-33797769

Assuntos
Estramenópilas
6.
J Eukaryot Microbiol ; 62(3): 318-26, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25283986

RESUMO

Two phagotrophic euglenid strains (Strains Pac and Tam) were isolated from coastal locations in Taiwan. Ultrastructural characteristics of the strains included five pellicle strips joined at the posterior end. The strips were formed by major grooves with bifurcated edges. At the cell anterior, the feeding structure formed a lip. Underneath the lip was a comb composed of layers of microtubules. Farther back, two supporting rods tapered toward the posterior end, and a number of vanes with attached microtubules were present between the rods. The morphological characteristics agree with Ploeotia costata Strain CCAP 1265/1. However, the 18S rDNA sequences of Strains Pac/Tam lacked a group I intron and possessed three extra insertions of 116, 67, and 53 bp. Phylogenetic analysis indicated low sequence similarity between Strains Pac/Tam and CCAP 1265/1 (92%). The morphospecies P. costata apparently includes a substantial level of DNA sequence divergence, and likely represents multiple molecular species units.


Assuntos
Euglenozoários/classificação , Euglenozoários/isolamento & purificação , Variação Genética , Genótipo , Filogenia , Análise por Conglomerados , DNA de Protozoário/química , DNA de Protozoário/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Microbiologia Ambiental , Euglenozoários/genética , Euglenozoários/ultraestrutura , Integrons , Microscopia , Dados de Sequência Molecular , Mutagênese Insercional , RNA Ribossômico 18S/genética , Análise de Sequência de DNA , Taiwan
7.
Proc Natl Acad Sci U S A ; 109(51): 20971-4, 2012 Dec 18.
Artigo em Inglês | MEDLINE | ID: mdl-23213234

RESUMO

Our understanding of the evolution of life on Earth is limited by the imperfection of the fossil record. One reason for this imperfect record is that organisms without hard parts, such as bones, shells, and wood, have a very low potential to enter the fossil record. Occasionally, however, exceptional fossil deposits that preserve soft-bodied organisms provide a rare glimpse of the true biodiversity during past periods of Earth history. We here present an extraordinary find of a fossil ciliate that is encased inside the wall layer of a more than 200 Ma leech cocoon from Antarctica. The microfossil consists of a helically contractile stalk that attaches to a main body with a peristomial feeding apparatus and a large C-shaped macronucleus. It agrees in every aspect with the living bell animals, such as Vorticella. Vorticellids and similar peritrichs are vital constituents of aquatic ecosystems worldwide, but so far have lacked any fossil record. This discovery offers a glimpse of ancient soft-bodied protozoan biotas, and also highlights the potential of clitellate cocoons as microscopic "conservation traps" comparable to amber.


Assuntos
Biodiversidade , Fósseis , Sanguessugas/fisiologia , Animais , Regiões Antárticas , Evolução Biológica , Ecossistema , Geografia , Invertebrados , Paleontologia/métodos
9.
J Eukaryot Microbiol ; 61(2): 182-203, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24372610

RESUMO

The marine phototrophic dinoflagellate Gymnodinium smaydae n. sp. is described from cells prepared for light, scanning, and transmission electron microscopy. Also, sequences of the small (SSU) and large subunits (LSU) and the internal transcribed spacer region (ITS1-5.8S-ITS2) of ribosomal DNA were analyzed. This newly isolated dinoflagellate possessed nuclear chambers, nuclear fibrous connective, an apical groove running in a counterclockwise direction around the apex, and a major accessory pigment peridinin, which are four key features for the genus Gymnodinium. The epicone was conical with a round apex, while the hypocone was ellipsoid. Cells growing photosynthetically were 6.3-10.9 µm long and 5.1-10.0 µm wide, and therefore smaller than any other Gymnodinium species so far reported except Gymnodinium nanum. Cells were covered with polygonal amphiesmal vesicles arranged in 11 horizontal rows, and the vesicles were smaller than those of the other Gymnodinium species. This dinoflagellate had a sharp and elongated ventral ridge reaching half way down the hypocone, unlike other Gymnodinium species. Moreover, displacement of the cingulum was 0.4-0.6 × cell length while in other known Gymnodinium species it is less than 0.3 × cell length. In addition, the new species possessed a peduncle, permanent chloroplasts, pyrenoids, trichocysts, pusule systems, and small knobs along the apical furrow, but it lacked an eyespot, nematocysts, and body scales. The sequence of the SSU, ITS1-5.8S-ITS2, and LSU rDNA region differed by 1.5-3.8%, 6.0-17.4%, and 9.1-17.5%, respectively, from those of the most closely related species. The phylogenetic trees demonstrated that the new species belonged to the Gymnodinium clade at the base of a clade consisting of Gymnodinium acidotum, Gymnodinium dorsalisulcum, Gymnodinium eucyaneum, etc. Based on morphological and molecular data, we suggest that the taxon represents a new species, Gymnodinium smaydae n. sp.


Assuntos
Dinoflagellida/classificação , Dinoflagellida/isolamento & purificação , Água do Mar/parasitologia , Carotenoides/análise , Análise por Conglomerados , DNA de Protozoário/química , DNA de Protozoário/genética , DNA Ribossômico/química , DNA Ribossômico/genética , DNA Espaçador Ribossômico/química , DNA Espaçador Ribossômico/genética , Dinoflagellida/citologia , Dinoflagellida/genética , Genes de RNAr , Microscopia , Dados de Sequência Molecular , Organelas/ultraestrutura , Fotossíntese , Filogenia , RNA de Protozoário/genética , RNA Ribossômico/genética , RNA Ribossômico 18S/genética , República da Coreia , Análise de Sequência de DNA
10.
J Eukaryot Microbiol ; 60(4): 327-34, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23710546

RESUMO

Phototaxis provides phytoplankton with the means to orient themselves in a light gradient. This is accomplished using an eyespot and associated organelles. For the dinoflagellate Kryptoperidinium foliaceum, which has been described as having one of the most elaborate eyespot complexes known, positive phototaxis has hitherto not been reported. In this study, we show that a newly isolated strain of K. foliaceum is indeed capable of positive phototaxis with a mean vector (± 95% confidence interval) of 352°± 2.2, where 0/360° indicates the position of the light source. A study of three strains (UTEX 1688, CCMP 1326, and MBL07) of K. foliaceum showed that the eyespot in two of these strains has degenerated following decades in culture. Thus, previous studies have failed to report positive phototaxis due to loss of directionality caused by the degenerated eyespot. The results are discussed in a broader context and we conclude that studies on algal morphology and physiology may result in erroneous conclusions if based on algal cultures maintained under laboratory conditions for extended periods.


Assuntos
Dinoflagellida/fisiologia , Dinoflagellida/ultraestrutura , Luz , Locomoção/efeitos da radiação , Dinoflagellida/efeitos da radiação , Microscopia Eletrônica de Transmissão , Organelas/fisiologia , Organelas/efeitos da radiação , Organelas/ultraestrutura , Fotossíntese/fisiologia
11.
J Eukaryot Microbiol ; 59(4): 374-400, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22708786

RESUMO

We provide a detailed study of four marine Mesodinium species and compare the data to the companion article on Mesodinium chamaeleon and other available studies on Mesodinium, to shed some light on the taxonomy of the genus. Micrographs of two red phototrophic Mesodinium species, Mesodinium rubrum and Mesodinium major n. sp., as well as the first published micrographs of two heterotrophic species, M. pulex and M. pupula are presented in combination with molecular analyses based on the ribosomal genes. The main conclusion of this study is the invalidity of the genus Myrionecta based on the arrangements of the basal bodies forming the cirri and the separation of species formerly known as M. rubrum resulting in an emended description of M. rubrum and the description of a related new species M. major n. sp.


Assuntos
Cilióforos/genética , Cilióforos/ultraestrutura , Cilióforos/classificação , Cilióforos/isolamento & purificação , Análise por Conglomerados , DNA de Protozoário/química , DNA de Protozoário/genética , DNA Ribossômico/química , DNA Ribossômico/genética , DNA Espaçador Ribossômico/química , DNA Espaçador Ribossômico/genética , Genes de RNAr , Microscopia , Dados de Sequência Molecular , Filogenia , RNA de Protozoário/genética , RNA Ribossômico/genética , Água do Mar/parasitologia , Análise de Sequência de DNA
12.
J Eukaryot Microbiol ; 59(1): 20-39, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22221919

RESUMO

We provide here the description of a new marine species that harbors green or red chloroplasts. In contrast to certain other species of the genus, Mesodinium chamaeleon n. sp. can be maintained in culture for short periods only. It captures and ingests flagellates including cryptomonads. The prey is ingested very rapidly into a food vacuole without the cryptomonad flagella being shed and the trichocysts being discharged. The individual food vacuoles subsequently serve as photosynthetic units, each containing the cryptomonad chloroplast, a nucleus, and some mitochondria. The ingested cells are eventually digested. This type of symbiosis differs from other plastid-bearing Mesodinium spp. in retaining ingested cryptomonad cells almost intact. The food strategy of the new species appears to be intermediate between heterotrophic species, such as Mesodinium pulex and Mesodinium pupula, and species with red cryptomonad endosymbionts, such as Mesodinium rubrum.


Assuntos
Cilióforos/classificação , Cilióforos/citologia , Cloroplastos/ultraestrutura , Cilióforos/isolamento & purificação , Cilióforos/fisiologia , Criptófitas/crescimento & desenvolvimento , DNA de Protozoário/química , DNA de Protozoário/genética , Digestão , Ingestão de Alimentos , Comportamento Alimentar , Microscopia , Dados de Sequência Molecular , Análise de Sequência de DNA , Vacúolos/parasitologia
13.
Eur J Protistol ; 86: 125930, 2022 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-36162240

RESUMO

Two strains of peridinioids were isolated from a flooded stream near Aveiro, central Portugal, and examined by light microscopy, scanning electron microscopy and serial-section transmission electron microscopy. The two strains showed the same tabulation and cell shape as Peridiniopsis cunningtonii. One of the strains had lightly reticulated plates and spines in most hypothecal plates, matching the features of typical P. cunningtonii. The other strain showed smooth plates and consistently lacked spines in the apiculate hypotheca. The strains were similar in fine structure and had a central pyrenoid with a starch sheath and perforated by cytoplasmic channels. Details of the flagellar apparatus matched those known from Parvodinium, as did the remarkably long microtubular strand leading to an extruded peduncle that was visible in serial sections. Phylogenetic analyses based on partial LSU rDNA and the concatenated ribosomal operon placed the strain with the smooth hypotheca in a clade with Parvodinium species. The two strains grouped as closely related sister taxa in the partial LSU rDNA phylogeny. A new combination is proposed, Parvodinium cunningtonii comb. nov. and a new variety, Parvodinium cunningtonii var. inerme var. nov., is described.


Assuntos
Dinoflagellida , Filogenia , DNA Ribossômico/genética , Microscopia Eletrônica de Transmissão , Microscopia Eletrônica de Varredura
14.
J Eukaryot Microbiol ; 58(4): 284-309, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21535293

RESUMO

The heterotrophic dinoflagellate Gyrodiniellum shiwhaense n. gen., n. sp. is described from live cells and from cells prepared for light, scanning electron, and transmission electron microscopy. Also, sequences of the small subunit (SSU) and large subunit (LSU) of rDNA have been analyzed. The episome is conical, while the hyposome is ellipsoid. Cells are covered with polygonal amphiesmal vesicles arranged in 16 horizontal rows. Unlike other Gyrodinium-like dinoflagellates, the apical end of the cell shows a loop-shaped row of five elongate amphiesmal vesicles. The cingulum is displaced by 0.3-0.5 × cell length. Cells that were feeding on the dinoflagellate Amphidinium carterae Hulburt were 9.1-21.6 µm long and 6.6-15.7 µm wide. Cells of G. shiwhaense contain nematocysts, trichocysts, a peduncle, and pusule systems, but they lack chloroplasts. The SSU rDNA sequence is >3% different from that of the six most closely related species: Warnowia sp. (FJ947040), Lepidodinium viride Watanabe, Suda, Inouye, Sawaguchi & Chihara, Gymnodinium aureolum (Hulburt) Hansen, Gymnodinium catenatum Graham, Nematodinium sp. (FJ947039), and Gymnodinium sp. MUCC284 (AF022196), while the LSU rDNA is 11-12% different from that of Warnowia sp., G. aureolum, and Nematodinium sp. (FJ947041). The phylogenetic trees show that the species belongs in the Gymnodinium sensu stricto clade. However, in contrast to Gymnodinium spp., cells lack nuclear envelope chambers and a nuclear fibrous connective. Unlike Polykrikos spp., cells of which possess a taeniocyst-nematocyst complex, G. shiwhaense has nematocysts but lacks taeniocysts. It differs from Paragymnodinium shiwhaense Kang, Jeong, Moestrup & Shin by possessing nematocysts with stylets and filaments. Gyrodiniellum shiwhaense n. gen., n. sp. furthermore lacks ocelloids, in contrast to Warnowia spp., Nematodinium spp., and Proterythropsis spp. Based on morphological and molecular data, we suggest that the taxon represents a new species within a new genus.


Assuntos
DNA de Protozoário/genética , Dinoflagellida/classificação , Dinoflagellida/isolamento & purificação , Sequência de Bases , DNA Ribossômico/genética , Dinoflagellida/genética , Dinoflagellida/ultraestrutura , Coreia (Geográfico) , Microscopia Eletrônica , Dados de Sequência Molecular , Membrana Nuclear/ultraestrutura , Organelas/ultraestrutura , Plâncton , Análise de Sequência de DNA
15.
Eur J Protistol ; 78: 125770, 2021 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-33549968

RESUMO

Two strains of Sphaerodinium were established from two mountain areas in Portugal and examined by light microscopy, scanning and transmission electron microscopy, and sequence analyses of nuclear-encoded SSU, ITS1-5.8S-ITS2 and LSU rDNA. Both strains were identified as S. polonicum var. tatricum on the basis of comparison with the original taxonomic descriptions within the genus. The two strains were nearly identical in morphology and ultrastructure, except for the presence of pseudograna-like thylakoid stacks within more rounded chloroplast lobes in one of them. Sexual reproduction occurred in culture batches and resting cysts with single or grouped processes with wide bases and distal platforms with slightly recurved margins were seen to develop by sudden retraction of planozygote cytoplasm. Morphological, fine-structural and molecular characters were compared with previously available information from S. cracoviense, allowing for a more robust characterization of the genus. Important characters include a type F eyespot, a pusule canal linking the transverse flagellar canal to a collecting chamber connected to regular pusular tubes, a ventral fibre extending from the proximal-right side of the longitudinal basal body, and a membranous, lamellar body with a honeycomb pattern near the flagellar base area. The latter two features are shared with Baldinia anauniensis.


Assuntos
Dinoflagellida/classificação , Dinoflagellida/ultraestrutura , Filogenia , DNA de Protozoário/genética , DNA Ribossômico/genética , Dinoflagellida/genética , Microscopia Eletrônica de Varredura , Microscopia Eletrônica de Transmissão
16.
J Eukaryot Microbiol ; 57(4): 308-21, 2010.
Artigo em Inglês | MEDLINE | ID: mdl-20561119

RESUMO

The external and internal ultrastructure of the harmful unarmored dinoflagellate Cochlodinium polykrikoides Margalef has been examined with special reference to the apical groove and three-dimensional structure of the flagellar apparatus. The apical groove is U-shaped and connected to the anterior sulcal extension on the dorsal side of the epicone. The eyespot is located dorsally and composed of two layers of globules situated within the chloroplast. A narrow invagination of the plasma membrane is associated with the eyespot. The nuclear envelope has normal nuclear pores similar to other eukaryotes but different from the Gymnodinium group with diagnostic nuclear chambers. The longitudinal and transverse basal bodies are separated by approximately 0.5-1.0 microm and interconnected directly by a striated basal body connective and indirectly by microtubular and fibrous structures. Characteristic features of the flagellar apparatus are as follows: (1) a nuclear extension projects to the R1 (longitudinal microtubular root) and is connected to the root by thin fibrous material; (2) fibrillar structures are associated with the longitudinal and transverse flagellar canal; and (3) a striated ventral connective extends toward the posterior end of the cell along the longitudinal flagellar canal. We conclude, based on both morphological and molecular evidence, that Cochlodinium is only distantly related to Gymnodinium.


Assuntos
Dinoflagellida/ultraestrutura , Flagelos/ultraestrutura , Membrana Celular/ultraestrutura , Núcleo Celular/ultraestrutura , Dinoflagellida/classificação , Microscopia Eletrônica de Varredura , Microscopia Eletrônica de Transmissão
17.
J Eukaryot Microbiol ; 57(6): 568-85, 2010.
Artigo em Inglês | MEDLINE | ID: mdl-21040101

RESUMO

Sphaerodinium cracoviense was collected near Cracow, Poland, and analysed by light microscopy, scanning electron microscopy, and serial-section transmission electron microscopy. Thecae showed a peridinioid type of plate arrangement with unusual numbers in the anterior intercalary and postcingular plate series: 4 and 6, respectively. The apical pore of S. cracoviense differed from the typical arrangement seen in many thecate forms and included a furrow with knob-like protuberances reminiscent of the apical area of some woloszynskioids. The flagellar apparatus included the three microtubular roots that extend to the left of the basal bodies and a striated root connective between the transverse striated root and the longitudinal microtubular root. Both the single-stranded root that associates with the right side of the longitudinal basal body in peridinioids and gonyaulacoids, and the layered connective typical of peridinioids were absent. The eyespot was formed by a layer of vesicle-contained crystal-like units underlain by layers of variably fused globules not bounded by membranes, and represents a novel type. The pusular system included a long canal with a dilated inner portion with radiating tubules. Bayesian and maximum likelihood analyses based on large subunit rDNA placed Sphaerodinium as a sister taxon to a group of woloszynskioids and relatively far from Peridinium and its allies.


Assuntos
Dinoflagellida/classificação , Dinoflagellida/ultraestrutura , Filogenia , Análise por Conglomerados , DNA de Protozoário/química , DNA de Protozoário/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Dinoflagellida/genética , Água Doce , Genes de RNAr , Microscopia , Dados de Sequência Molecular , Organelas/ultraestrutura , Polônia , RNA de Protozoário/genética , RNA Ribossômico/genética , Análise de Sequência de DNA
18.
J Eukaryot Microbiol ; 57(2): 121-44, 2010.
Artigo em Inglês | MEDLINE | ID: mdl-20487128

RESUMO

The mixotrophic dinoflagellate Paragymnodinium shiwhaense n. gen., n. sp. is described from living cells and from cells prepared by light, scanning electron, and transmission electron microscopy. In addition, sequences of the small subunit (SSU) and large subunit (LSU) rDNA and photosynthetic pigments are reported. The episome is conical, while the hyposome is hemispherical. Cells are covered with polygonal amphiesmal vesicles arranged in 16 rows and containing a very thin plate-like component. There is neither an apical groove nor apical line of narrow plates. Instead, there is a sulcal extension-like furrow. The cingulum is as wide as 0.2-0.3 x cell length and displaced by 0.2-0.3 x cell length. Cell length and width of live cells fed Amphidinium carterae were 8.4-19.3 and 6.1-16.0 microm, respectively. Paragymnodinium shiwhaense does not have a nuclear envelope chamber nor a nuclear fibrous connective (NFC). Cells contain chloroplasts, nematocysts, trichocysts, and peduncle, though eyespots, pyrenoids, and pusules are absent. The main accessory pigment is peridinin. The sequence of the SSU rDNA of this dinoflagellate (GenBank AM408889) is 4% different from that of Gymnodinium aureolum, Lepidodinium viride, and Gymnodinium catenatum, the three closest species, while the LSU rDNA was 17-18% different from that of G. catenatum, Lepidodinium chlorophorum, and Gymnodinium nolleri. The phylogenetic trees show that this dinoflagellate belongs within the Gymnodinium sensu stricto clade. However, in contrast to Gymnodinium spp., cells lack nuclear envelope chambers, NFC, and an apical groove. Unlike Polykrikos spp., which have a taeniocyst-nematocyst complex, P. shiwhaense has nematocysts without taeniocysts. In addition, P. shiwhaense does not have ocelloids in contrast to Warnowia spp. and Nematodinium spp. Therefore, based on morphological and molecular analyses, we suggest that this taxon is a new species, also within a new genus.


Assuntos
Dinoflagellida/classificação , Dinoflagellida/isolamento & purificação , Água do Mar/parasitologia , Cloroplastos/química , Análise por Conglomerados , DNA de Protozoário/química , DNA de Protozoário/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Dinoflagellida/citologia , Dinoflagellida/genética , Genes de RNAr , Microscopia , Microscopia Eletrônica de Varredura , Microscopia Eletrônica de Transmissão , Dados de Sequência Molecular , Filogenia , Pigmentos Biológicos/análise , RNA de Protozoário/genética , RNA Ribossômico/genética , RNA Ribossômico 18S/genética , República da Coreia , Análise de Sequência de DNA , Homologia de Sequência do Ácido Nucleico
19.
Harmful Algae ; 98: 101902, 2020 09.
Artigo em Inglês | MEDLINE | ID: mdl-33129459

RESUMO

A recently published study analyzed the phylogenetic relationship between the genera Centrodinium and Alexandrium, confirming an earlier publication showing the genus Alexandrium as paraphyletic. This most recent manuscript retained the genus Alexandrium, introduced a new genus Episemicolon, resurrected two genera, Gessnerium and Protogonyaulax, and stated that: "The polyphyly [sic] of Alexandrium is solved with the split into four genera". However, these reintroduced taxa were not based on monophyletic groups. Therefore this work, if accepted, would result in replacing a single paraphyletic taxon with several non-monophyletic ones. The morphological data presented for genus characterization also do not convincingly support taxa delimitations. The combination of weak molecular phylogenetics and the lack of diagnostic traits (i.e., autapomorphies) render the applicability of the concept of limited use. The proposal to split the genus Alexandrium on the basis of our current knowledge is rejected herein. The aim here is not to present an alternative analysis and revision, but to maintain Alexandrium. A better constructed and more phylogenetically accurate revision can and should wait until more complete evidence becomes available and there is a strong reason to revise the genus Alexandrium. The reasons are explained in detail by a review of the available molecular and morphological data for species of the genera Alexandrium and Centrodinium. In addition, cyst morphology and chemotaxonomy are discussed, and the need for integrative taxonomy is highlighted.


Assuntos
Dinoflagellida , Filogenia
20.
Protist ; 169(2): 280-306, 2018 04.
Artigo em Inglês | MEDLINE | ID: mdl-29709647

RESUMO

The rarely recorded dinoflagellate Hemidinium ochraceum Levander was isolated from a rainwater rock-pool in Finland and the motile stage studied by light- and electron microscopy and molecular sequencing. The ultrastructure of the motile stage revealed several features not previously observed in other dinoflagellates, e.g. thecal plates with inwards 'knobs' and a peculiar corrugated left sulcal plate. The apparent lack of the R2 and R4 flagellar roots was also unusual. The typical plate tabulation was 4', 2a, 8″, cx, 4c,?s, 3‴, cy, 1p, 2″″, cx and cy being extra plates associated with the cingulum, but intraspecific variations were observed in shape and number of plates. Phylogenetic analyses of nuclear-encoded LSU rDNA and concatenation of LSU and SSU rDNA sequences showed that H. ochraceum was only distantly related to Hemidinium nasutum (the type species of Hemidinium). The immotile coccoid stage resembled Gloeodinium montanum and a weakly supported relationship between the two was only inferred in the analyses based on LSU rDNA. Hemidinium ochraceum showed some resemblance to Rufusiella insignis sensu Richards, but the true identity of this species and of genus Rufusiella is uncertain. A new genus, Nottbeckia, is erected to accommodate H. ochraceum, as Nottbeckia ochracea gen. et comb. nov.


Assuntos
Dinoflagellida/genética , DNA Ribossômico/genética , Dinoflagellida/classificação , Água Doce , Filogenia
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