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1.
Math Program ; 193(2): 513-548, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35702694

RESUMO

In the noisy tensor completion problem we observe m entries (whose location is chosen uniformly at random) from an unknown n 1 × n 2 × n 3 tensor T. We assume that T is entry-wise close to being rank r. Our goal is to fill in its missing entries using as few observations as possible. Let n = max ( n 1 , n 2 , n 3 ) . We show that if m ≳ n 3 / 2 r then there is a polynomial time algorithm based on the sixth level of the sum-of-squares hierarchy for completing it. Our estimate agrees with almost all of T's entries almost exactly and works even when our observations are corrupted by noise. This is also the first algorithm for tensor completion that works in the overcomplete case when r > n , and in fact it works all the way up to r = n 3 / 2 - ϵ . Our proofs are short and simple and are based on establishing a new connection between noisy tensor completion (through the language of Rademacher complexity) and the task of refuting random constraint satisfaction problems. This connection seems to have gone unnoticed even in the context of matrix completion. Furthermore, we use this connection to show matching lower bounds. Our main technical result is in characterizing the Rademacher complexity of the sequence of norms that arise in the sum-of-squares relaxations to the tensor nuclear norm. These results point to an interesting new direction: Can we explore computational vs. sample complexity tradeoffs through the sum-of-squares hierarchy?

2.
J Comput Biol ; 27(4): 613-625, 2020 04.
Artigo em Inglês | MEDLINE | ID: mdl-31794679

RESUMO

Reconstruction of population histories is a central problem in population genetics. Existing coalescent-based methods, such as the seminal work of Li and Durbin, attempt to solve this problem using sequence data but have no rigorous guarantees. Determining the amount of data needed to correctly reconstruct population histories is a major challenge. Using a variety of tools from information theory, the theory of extremal polynomials, and approximation theory, we prove new sharp information-theoretic lower bounds on the problem of reconstructing population structure-the history of multiple subpopulations that merge, split, and change sizes over time. Our lower bounds are exponential in the number of subpopulations, even when reconstructing recent histories. We demonstrate the sharpness of our lower bounds by providing algorithms for distinguishing and learning population histories with matching dependence on the number of subpopulations. Along the way and of independent interest, we essentially determine the optimal number of samples needed to learn an exponential mixture distribution information-theoretically, proving the upper bound by analyzing natural (and efficient) algorithms for this problem.


Assuntos
Biologia Computacional , Genética Populacional , Teoria da Informação , Modelos Genéticos , Algoritmos , Simulação por Computador , Polimorfismo de Nucleotídeo Único/genética
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