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1.
J Med Virol ; 93(3): 1722-1731, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-32966646

RESUMO

During the first few months of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) evolution in a new host, contrasting hypotheses have been proposed about the way the virus has evolved and diversified worldwide. The aim of this study was to perform a comprehensive evolutionary analysis to describe the human outbreak and the evolutionary rate of different genomic regions of SARS-CoV-2. The molecular evolution in nine genomic regions of SARS-CoV-2 was analyzed using three different approaches: phylogenetic signal assessment, emergence of amino acid substitutions, and Bayesian evolutionary rate estimation in eight successive fortnights since the virus emergence. All observed phylogenetic signals were very low and tree topologies were in agreement with those signals. However, after 4 months of evolution, it was possible to identify regions revealing an incipient viral lineage formation, despite the low phylogenetic signal since fortnight 3. Finally, the SARS-CoV-2 evolutionary rate for regions nsp3 and S, the ones presenting greater variability, was estimated as 1.37 × 10-3 and 2.19 × 10-3 substitution/site/year, respectively. In conclusion, results from this study about the variable diversity of crucial viral regions and determination of the evolutionary rate are consequently decisive to understand essential features of viral emergence. In turn, findings may allow the first-time characterization of the evolutionary rate of S protein, crucial for vaccine development.


Assuntos
Evolução Biológica , Proteases Semelhantes à Papaína de Coronavírus/genética , Evolução Molecular , SARS-CoV-2/genética , Glicoproteína da Espícula de Coronavírus/genética , Substituição de Aminoácidos/genética , Animais , COVID-19/patologia , Quirópteros/virologia , Genoma Viral/genética , Humanos , Filogenia
2.
J Virol ; 93(13)2019 07 01.
Artigo em Inglês | MEDLINE | ID: mdl-31019053

RESUMO

Equine influenza virus (EIV) causes severe acute respiratory disease in horses. Currently, the strains belonging to the H3N8 subtype are divided into two clades, Florida clade 1 (FC1) and Florida clade 2 (FC2), which emerged in 2002. Both FC1 and FC2 clades were reported in Asian and Middle East countries in the last decade. In this study, we described the evolution, epidemiology, and molecular characteristic of the EIV lineages, with focus on those detected in Asia from 2007 to 2017. The full genome phylogeny showed that FC1 and FC2 constituted separate and divergent lineages, without evidence of reassortment between the clades. While FC1 evolved as a single lineage, FC2 showed a divergent event around 2004 giving rise to two well-supported and coexisting sublineages, European and Asian. Furthermore, two different spread patterns of EIV in Asian countries were identified. The FC1 outbreaks were caused by independent introductions of EIV from the Americas, with the Asian isolates genetically similar to the contemporary American lineages. On the other hand, the FC2 strains detected in Asian mainland countries conformed to an autochthonous monophyletic group with a common ancestor dated in 2006 and showed evidence of an endemic circulation in a local host. Characteristic aminoacidic signature patterns were detected in all viral proteins in both Asian-FC1 and FC2 populations. Several changes were located at the top of the HA1 protein, inside or near antigenic sites. Further studies are needed to assess the potential impact of these antigenic changes in vaccination programs.IMPORTANCE The complex and continuous antigenic evolution of equine influenza viruses (EIVs) remains a major hurdle for vaccine development and the design of effective immunization programs. The present study provides a comprehensive analysis showing the EIV evolutionary dynamics, including the spread and circulation within the Asian continent and its relationship to global EIV populations over a 10-year period. Moreover, we provide a better understanding of EIV molecular evolution in Asian countries and its consequences on the antigenicity. The study underscores the association between the global horse movement and the circulation of EIV in this region. Understanding EIV evolution is imperative in order to mitigate the risk of outbreaks affecting the horse industry and to help with the selection of the viral strains to be included in the formulation of future vaccines.


Assuntos
Doenças dos Cavalos/epidemiologia , Doenças dos Cavalos/virologia , Vírus da Influenza A Subtipo H3N8/classificação , Vírus da Influenza A Subtipo H3N8/isolamento & purificação , Infecções por Orthomyxoviridae/epidemiologia , Infecções por Orthomyxoviridae/virologia , Filogenia , Animais , Ásia , Surtos de Doenças , Evolução Molecular , Cavalos , Vírus da Influenza A Subtipo H3N8/genética , Vírus da Influenza A Subtipo H7N7/classificação , Filogeografia , Proteínas Virais/genética
3.
J Viral Hepat ; 27(6): 620-630, 2020 06.
Artigo em Inglês | MEDLINE | ID: mdl-32052519

RESUMO

The genotype F (HBV-F) is an autochthonous Native American strain of the hepatitis B virus. In this study, we reconstruct the HBV-F long-term evolution under a hypothesis of co-divergence with humans in Central and South America, since their entry into the region 14.5-16 thousand years ago. The Bayesian phylogeographic reconstruction supported a virus-host co-expansion; however, two evolutionary scenarios would have been present. Whereas subgenotype F1 spreads along a Pacific coastal route and would have evolved associated with Central American and Andean cultures from the west of the continent, subgenotypes F2-F6 spread along the Atlantic coastline and inner pathways associated with communities inhabiting the tropical forest lowlands. Then, we propose a model for HBV-F evolution in which the selection of differential biological characteristics in these two main groups would be related to their evolution in host populations with different genetic backgrounds and dissimilar demographic conditions.


Assuntos
Evolução Molecular , Vírus da Hepatite B , Hepatite B , Teorema de Bayes , América Central , Genótipo , Hepatite B/história , Vírus da Hepatite B/genética , História Antiga , Humanos , Filogenia , América do Sul
4.
Viruses ; 15(6)2023 06 16.
Artigo em Inglês | MEDLINE | ID: mdl-37376681

RESUMO

The second wave of COVID-19 occurred in South America in early 2021 and was mainly driven by Gamma and Lambda variants. In this study, we aimed to describe the emergence and local genomic diversity of the SARS-CoV-2 Lambda variant in Argentina, from its initial entry into the country until its detection ceased. Molecular surveillance was conducted on 9356 samples from Argentina between October 2020 and April 2022, and sequencing, phylogenetic, and phylogeographic analyses were performed. Our findings revealed that the Lambda variant was first detected in Argentina in January 2021 and steadily increased in frequency until it peaked in April 2021, with continued detection throughout the year. Phylodynamic analyses showed that at least 18 introductions of the Lambda variant into the country occurred, with nine of them having evidence of onward local transmission. The spatial--temporal reconstruction showed that Argentine clades were associated with Lambda sequences from Latin America and suggested an initial diversification in the Metropolitan Area of Buenos Aires before spreading to other regions in Argentina. Genetic analyses of genome sequences allowed us to describe the mutational patterns of the Argentine Lambda sequences and detect the emergence of rare mutations in an immunocompromised patient. Our study highlights the importance of genomic surveillance in identifying the introduction and geographical distribution of the SARS-CoV-2 Lambda variant, as well as in monitoring the emergence of mutations that could be involved in the evolutionary leaps that characterize variants of concern.


Assuntos
COVID-19 , SARS-CoV-2 , Humanos , Argentina/epidemiologia , SARS-CoV-2/genética , Filogenia , COVID-19/epidemiologia , Mutação
5.
Front Microbiol ; 13: 946703, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35966715

RESUMO

Hepatitis B virus (HBV) subgenotype F1b infection has been associated with the early occurrence of hepatocellular carcinoma in chronically infected patients from Alaska and Peru. In Argentina, however, despite the high prevalence of subgenotype F1b infection, this relationship has not been described. To unravel the observed differences in the progression of the infection, an in-depth molecular and biological characterization of the subgenotype F1b was performed. Phylogenetic analysis of subgenotype F1b full-length genomes revealed the existence of two highly supported clusters. One of the clusters, designated as gtF1b Basal included sequences mostly from Alaska, Peru and Chile, while the other, called gtF1b Cosmopolitan, contained samples mainly from Argentina and Chile. The clusters were characterized by a differential signature pattern of eight nucleotides distributed throughout the genome. In vitro characterization of representative clones from each cluster revealed major differences in viral RNA levels, virion secretion, antigen expression levels, as well as in the localization of the antigens. Interestingly, a differential regulation in the expression of genes associated with tumorigenesis was also identified. In conclusion, this study provides new insights into the molecular and biological characteristics of the subgenotype F1b clusters and contributes to unravel the different clinical outcomes of subgenotype F1b chronic infections.

6.
mBio ; 13(1): e0344221, 2022 02 22.
Artigo em Inglês | MEDLINE | ID: mdl-35073758

RESUMO

Recent studies have shown a temporal increase in the neutralizing antibody potency and breadth to SARS-CoV-2 variants in coronavirus disease 2019 (COVID-19) convalescent individuals. Here, we examined longitudinal antibody responses and viral neutralizing capacity to the B.1 lineage virus (Wuhan related), to variants of concern (VOC; Alpha, Beta, Gamma, and Delta), and to a local variant of interest (VOI; Lambda) in volunteers receiving the Sputnik V vaccine in Argentina. Longitudinal serum samples (N = 536) collected from 118 volunteers obtained between January and October 2021 were used. The analysis indicates that while anti-spike IgG levels significantly wane over time, the neutralizing capacity for the Wuhan-related lineages of SARS-CoV-2 and VOC is maintained within 6 months of vaccination. In addition, an improved antibody cross-neutralizing ability for circulating variants of concern (Beta and Gamma) was observed over time postvaccination. The viral variants that displayed higher escape to neutralizing antibodies with respect to the original virus (Beta and Gamma variants) were the ones showing the largest increase in susceptibility to neutralization over time after vaccination. Our observations indicate that serum neutralizing antibodies are maintained for at least 6 months and show a reduction of VOC escape to neutralizing antibodies over time after vaccination. IMPORTANCE Vaccines have been produced in record time for SARS-CoV-2, offering the possibility of halting the global pandemic. However, inequalities in vaccine accessibility in different regions of the world create a need to increase international cooperation. Sputnik V is a recombinant adenovirus-based vaccine that has been widely used in Argentina and other developing countries, but limited information is available about its elicited immune responses. Here, we examined longitudinal antibody levels and viral neutralizing capacity elicited by Sputnik V vaccination. Using a cohort of 118 volunteers, we found that while anti-spike antibodies wane over time, the neutralizing capacity to viral variants of concern and local variants of interest is maintained within 4 months of vaccination. In addition, we observed an increased cross-neutralization activity over time for the Beta and Gamma variants. This study provides valuable information about the immune response generated by a vaccine platform used in many parts of the world.


Assuntos
Vacinas contra COVID-19 , COVID-19 , SARS-CoV-2 , Glicoproteína da Espícula de Coronavírus , Humanos , Anticorpos Neutralizantes , Anticorpos Antivirais , COVID-19/prevenção & controle , Estudos Longitudinais , Glicoproteína da Espícula de Coronavírus/imunologia , Vacinação , Vacinas contra COVID-19/imunologia , Vacinas contra COVID-19/uso terapêutico
7.
Front Med (Lausanne) ; 8: 755463, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34957143

RESUMO

SARS-CoV-2 variants with concerning characteristics have emerged since the end of 2020. Surveillance of SARS-CoV-2 variants was performed on a total of 4,851 samples from the capital city and 10 provinces of Argentina, during 51 epidemiological weeks (EWs) that covered the end of the first wave and the ongoing second wave of the COVID-19 pandemic in the country (EW 44/2020 to EW 41/2021). The surveillance strategy was mainly based on Sanger sequencing of a Spike coding region that allows the identification of signature mutations associated with variants. In addition, whole-genome sequences were obtained from 637 samples. The main variants found were Gamma and Lambda, and to a lesser extent, Alpha, Zeta, and Epsilon, and more recently, Delta. Whereas, Gamma dominated in different regions of the country, both Gamma and Lambda prevailed in the most populated area, the metropolitan region of Buenos Aires. The lineages that circulated on the first wave were replaced by emergent variants in a term of a few weeks. At the end of the ongoing second wave, Delta began to be detected, replacing Gamma and Lambda. This scenario is consistent with the Latin American variant landscape, so far characterized by a concurrent increase in Delta circulation and a stabilization in the number of cases. The cost-effective surveillance protocol presented here allowed for a rapid response in a resource-limited setting, added information on the expansion of Lambda in South America, and contributed to the implementation of public health measures to control the disease spread in Argentina.

8.
Infect Genet Evol ; 85: 104523, 2020 11.
Artigo em Inglês | MEDLINE | ID: mdl-32890766

RESUMO

BACKGROUND: The genetic diversity of persistent infectious agents, such as HHV-8, correlates closely with the migration of modern humans out of East Africa which makes them useful to trace human migrations. However, there is scarce data about the evolutionary history of HHV-8 particularly in multiethnic Latin American populations. OBJECTIVES: The aims of this study were to characterize the genetic diversity and the phylogeography of HHV-8 in two distant geographic regions of Argentina, and to establish potential associations with pathogenic conditions and the genetic ancestry of the population. STUDY DESIGN: A total of 101 HIV-1 infected subjects, 93 Kaposi's Sarcoma (KS) patients and 411 blood donors were recruited in the metropolitan (MET) and north-western regions of Argentina (NWA). HHV-8 DNA was detected by ORF-26 PCR in whole blood, saliva and FFPE tissues. Then, ORF-26 and ORF-K1 were analyzed for subtype assignment. Mitochondrial DNA and Y chromosome haplogroups, as well as autosomal ancestry markers were evaluated in samples in which subtypes could be assigned. Phylogeographic analysis was performed in the ORF-K1 sequences from this study combined with 388 GenBank sequences. RESULTS: HHV-8 was detected in 50.7%, 59.2% and 8% of samples from HIV-1 infected subjects, KS patients and blood donors, respectively. ORF-K1 phylogenetic analyses showed that subtypes A (A1-A5), B1, C (C1-C3) and F were present in 46.9%, 6.25%, 43.75% and 3.1% of cases, respectively. Analyses of ORF-26 fragment revealed that 81.95% of strains were subtypes A/C followed by J, B2, R, and K. The prevalence of subtype J was more commonly observed among KS patients when compared to the other groups. Among KS patients, subtype A/C was more commonly detected in MET whereas subtype J was the most frequent in NWA. Subtypes A/C was significantly associated with Native American maternal haplogroups (p = 0.004), whereas subtype J was related to non-Native American haplogroups (p < 0.0001). Sub-Saharan Africa, Europe and Latin America were the most probable locations from where HHV-8 was introduced to Argentina. CONCLUSIONS: These results give evidence of the geographic circulation of HHV-8 in Argentina, suggest the association of ORF-26 subtype J with KS development and provide new insights about its relationship with ancient and modern human migrations and identify the possible origins of this virus in Argentina.


Assuntos
Variação Genética , Genética Populacional , Genótipo , Herpesvirus Humano 8/genética , Filogeografia/estatística & dados numéricos , Sarcoma de Kaposi/epidemiologia , Sarcoma de Kaposi/genética , Adulto , Idoso , Argentina/epidemiologia , Doadores de Sangue/estatística & dados numéricos , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Filogenia , Vigilância da População
9.
Food Environ Virol ; 11(2): 198-203, 2019 06.
Artigo em Inglês | MEDLINE | ID: mdl-30895523

RESUMO

Environmental surveillance is an effective approach to investigate the circulation of human enteroviruses (EVs) in the population. EVs excreted by patients who present diverse clinical syndromes can remain infectious in the environment for several weeks, and limited data on circulating environmental EVs are available. A 6-year (2009-2014) surveillance study was conducted to detect non-polio enteroviruses (NPEVs) in the urban sewage of Cordoba city, Argentina. Echovirus 6 (E-6) was the most prevalent (28%), followed by E-14 (17%), E-16 (14%), Coxsackievirus (CV) A9 (11%), E-20 (9%), and CVA24 (6%). Other minority serotypes (E-7, E-13, E-21, E-25, and CVB4) were found, which together represented 14% of the total. In the absence of a systematic EV disease surveillance system, the detection and characterization of sewage-borne NPEVs will help us better understand the changes in EV disease trends and the epidemic background of circulating EVs, which could help interpret the EV trends and warn of future outbreaks in this area.


Assuntos
Infecções por Enterovirus/virologia , Enterovirus/isolamento & purificação , Argentina/epidemiologia , Enterovirus/classificação , Enterovirus/genética , Infecções por Enterovirus/epidemiologia , Monitoramento Ambiental , Humanos , Filogenia , Sorogrupo , Esgotos/virologia
10.
Infect Genet Evol ; 71: 91-97, 2019 07.
Artigo em Inglês | MEDLINE | ID: mdl-30910532

RESUMO

Hepatitis B virus (HBV) infection is a leading cause of severe chronic liver disease worldwide. The HBV epidemiology in Latin American countries is complex and the data is still scanty and fragmentary. The aim of this study was to investigate the distribution of HBV genotypes in Paraguay and to estimate the viral population dynamic and spread pattern of the main phylogenetic group. To this end, partial and complete genome sequences were obtained from 60 blood donor candidates and analysed by phylogenetic and Bayesian phylodynamic approaches. The phylogenetic analysis based on sequences of partial Polymerase/Pre-S1 overlapping region showed a predominance of the Native American subgenotype F4 (81.7%), the presence of the European subgenotypes A2 (1.7%) and D3 (8.3%), the African subgenotype A1 (3, 5%) and the Asian subgenotypes B2 (1.7%) and C2 (1.7%). The distribution of HBV genotypes was in accordance with the ethnic composition of the population. The phylogeographic analysis of subgenotype F4 complete genomes suggests that this lineage emerged and spread in the last 300 years. Paraguay was the most probable location of the common ancestor. The lineage diverged into two main clades and spread to neighbor regions, mainly Bolivia and Northwest Argentina, and Buenos Aires. The phylogeny showed a scanty geographical structure and a complex migratory pattern. In conclusion, the HBV genotypes circulating in Paraguay reflect the ethnic origin of the population. The distribution of genotypes and the phylogeographic reconstruction showed the impact of both global and local migrations in shaping the HBV molecular epidemiology in the region.


Assuntos
Vírus da Hepatite B/genética , Hepatite B/epidemiologia , Variação Genética , Genoma Viral , Humanos , Epidemiologia Molecular , Paraguai/epidemiologia , Filogenia , Filogeografia
11.
Infect Genet Evol ; 75: 104011, 2019 11.
Artigo em Inglês | MEDLINE | ID: mdl-31446138

RESUMO

BACKGROUND: The use of human and viral genetic markers offers a novel way to study human migration in multiethnic populations of Latin America. OBJECTIVES: Our goal was to characterize the genetic diversity and geographical origins of JC Polyomavirus (JCPyV) and the genetic ancestry of mitochondrial DNA (mtDNA) in inhabitants from 25 de Mayo, Misiones-Argentina, a small village of largely German ancestry located close to the border with Brazil. We also evaluated the extent of agreement between viral and mtDNA markers for the different ancestry components of this population. STUDY DESIGN: 68 individuals were analyzed for JCPyV and mtDNA diversity. JCPyV detection and typing was conducted in urine samples by PCR amplification, sequencing and phylogenetic analysis of the VP1 gene. mtDNA ancestry was assessed through HVS1 sequencing, with the resulting haplotypes being classified into haplogroups of Amerindian, European and African origin. The distribution of JCPyV diversity and mtDNA ancestry in the population was statistically evaluated by Fisher exact test and the level of agreement of both markers at the individual level was evaluated by Cohen's kappa coefficient. RESULTS: Our analysis showed that 57.4% of the samples were positive for JCPyV. Of these, the 47.6% were Asian-American Type 2, 33.3% European Type 1 and 19.1% African Type 3 in origin. The mtDNA ancestry of the study participants was 33.3% Amerindian and 66.7% European. There was a significant difference among the distribution of JCPyV diversity and mtDNA ancestry (p = 0.009) and at the individual level there was no correlation between the distribution of the both markers (κ = 0.154, p = 0.297). CONCLUSION: The apparent incongruence between JCPyV diversity and mtDNA ancestry may reflect the original settlement process and more recent migration to 25 de Mayo, the latter involving viral spread through migrants from Brazil. Some potential limitations to our interpretations are also discussed.


Assuntos
DNA Mitocondrial , Variação Genética , Vírus JC/genética , Infecções por Polyomavirus/genética , Infecções por Polyomavirus/virologia , Adulto , Idoso , Idoso de 80 Anos ou mais , Argentina , Evolução Biológica , Feminino , Genótipo , Haplótipos , Humanos , Vírus JC/classificação , Masculino , Pessoa de Meia-Idade , Filogenia
12.
Food Environ Virol ; 10(1): 121-126, 2018 03.
Artigo em Inglês | MEDLINE | ID: mdl-28840537

RESUMO

Environmental surveillance is an effective approach to investigate the circulation of human enteroviruses in the population. Enteroviruses E14, CVA9, E-6, E16, E20, E25, E13, and CVA24 were detected in sewage and a watercourse in central Argentina. E14 was the most frequent serotype and was found for the first time in environmental samples in our region. Phylogenetic and coalescence analyses showed at least two recent introduction events.


Assuntos
Infecções por Enterovirus/virologia , Enterovirus/crescimento & desenvolvimento , Água Doce/virologia , Filogenia , Sorogrupo , Esgotos/virologia , Argentina , Evolução Biológica , Enterovirus/genética , Monitoramento Ambiental , Humanos
13.
Infect Genet Evol ; 44: 34-42, 2016 10.
Artigo em Inglês | MEDLINE | ID: mdl-27321439

RESUMO

Hepatitis B virus (HBV) infection is a major public health problem worldwide. The aims of this study were to describe the molecular epidemiology of HBV in the Province of Misiones, Argentina and estimate the phylodynamic of the main groups in a Bayesian coalescent framework. To this end, partial or complete genome sequences were obtained from 52 blood donor candidates. The phylogenetic analysis based on partial sequences of S/P region showed a predominance of genotype D (65.4%), followed by genotype F (30.8%) and genotype A as a minority (3.8%). At subgenotype level, the circulation of subgenotypes D3 (42.3%), D2 (13.5%), F1b (11.5%) and F4 (9.6%) was mainly identified. The Bayesian coalescent analysis of 29 complete genome sequences for the main groups revealed that the subgenotypes D2 and D3 had several introductions to the region, with ancestors dating back from 1921 to 1969 and diversification events until the late '70s. The genotype F in Misiones has a more recent history; subgenotype F4 isolates were intermixed with sequences from Argentina and neighboring countries and only one significant cluster dated back in 1994 was observed. Subgenotype F1b isolates exhibited low genetic distance and formed a closely related monophyletic cluster, suggesting a very recent introduction. In conclusion, the phylogenetic and coalescent analyses showed that the European genotype D has a higher circulation, a longer history of diversification and may be responsible for the largest proportion of chronic HBV infections in the Province of Misiones. Genotype F, especially subgenotype F1b, had a more recent introduction and its diversification in the last 20years might be related to its involvement in new transmission events.


Assuntos
Vírus da Hepatite B/genética , Hepatite B/epidemiologia , Argentina/epidemiologia , Teorema de Bayes , Variação Genética , Genótipo , Hepatite B/virologia , Vírus da Hepatite B/patogenicidade , Humanos , Epidemiologia Molecular/métodos , Mutação , Filogenia , Regiões Promotoras Genéticas
14.
PLoS One ; 11(7): e0159509, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-27433800

RESUMO

Hepatitis B virus (HBV) is a globally distributed human pathogen that leads to both self-limited and chronic infections. At least eight genotypes (A-H) with distinct geographical allocations and phylodynamic behaviors have been described. They differ substantially in many virological and probably some clinical parameters. The aim of this study was to analyze full-length HBV genome sequences from individuals with symptomatic acute HBV infections using phylogenetic and coalescent methods. The phylogenetic analysis resulted in the following subgenotype distribution: F1b (52.7%), A2 (18.2%), F4 (18.2%) and A1, B2, D3 and F2a 1.8% each. These results contrast with those previously reported from chronic infections, where subgenotypes F1b, F4, A2 and genotype D were evenly distributed. This differential distribution might be related to recent internal migrations and/or intrinsic biological features of each viral genotype that could impact on the probability of transmission. The coalescence analysis showed that after a diversification process started in the 80s, the current sequences of subgenotype F1b were grouped in at least four highly supported lineages, whereas subgenotype F4 revealed a more limited diversification pattern with most lineages without offspring in the present. In addition, the genetic characterization of the studied sequences showed that only two of them presented mutations of clinical relevance at S codifyng region and none at the polymerase catalytic domains. Finally, since the acute infections could be an expression of the genotypes currently being transmitted to new hosts, the predominance of subgenotype F1b might have epidemiological, as well as, clinical relevance due to its potential adverse disease outcome among the chronic cases.


Assuntos
Evolução Molecular , Antígenos de Superfície da Hepatite B/genética , Vírus da Hepatite B/genética , Hepatite B/genética , DNA Viral/genética , Genótipo , Hepatite B/virologia , Vírus da Hepatite B/patogenicidade , Humanos , Filogenia , Análise de Sequência de DNA
15.
Infect Genet Evol ; 34: 122-5, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-26073681

RESUMO

Hepatitis B virus (HBV) is classified into eight main genotypes (A-H) and several subgenotypes. Here, three new genotype F complete genome sequences isolated from patients from Buenos Aires city are reported. The new sequences form a separate monophyletic group from the previously known subgenotype F4 strains. Based on results of phylogenetic, genetic distance and evolutionary analyses, the name F4b is proposed for these isolates and F4a for the formerly known as F4. The identification of new clusters allows deepening the knowledge about the diversification process and evolutionary history of HBV.


Assuntos
Vírus da Hepatite B/genética , Hepatite B/virologia , Análise por Conglomerados , Sequência Consenso , Variação Genética , Genótipo , Vírus da Hepatite B/classificação , Humanos , Epidemiologia Molecular , Filogenia , Análise de Sequência de DNA
16.
PLoS One ; 10(3): e0121436, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25822666

RESUMO

AIM: In order to assess Hepatitis B Virus genotype (g) and subgenotype (sg) implications in the course of infection, 234 HBsAg positive patients in different infection stages were characterized (66 acute infections, 63 HBeAg positive chronic infections and 105 anti-HBe positive chronic infections). RESULTS: Overall, sgA2 (17.9%), gD (20.9%), sgF1b (34.2%) and sgF4 (19.7%) were the most prevalent. Subgenotype F1b was overrepresented in acute and chronic HBeAg infections (56.1%), whereas gD was the most frequent (40.0%) in anti-HBe positive chronic infections. Among chronic infections, HBeAg positivity rates were 50.0, 12.5, 62.8 and 35.3% for sgA2, gD, sgF1b and sgF4, respectively (p <0.05). A bias toward BCP/preCore mutations was observed among genotypes. In anti-HBe positive chronic infections, sgF1b was more prone to have A1762T/G1764A mutation than sgA2, sgF4 and gD (75.0, 40.0, 33.3 and 31.8%, p<0.005), whereas in the pC region, gD and sgF4 were more likely to have G1896A than sgA2 and sgF1b (81.0, 72.7, 0.0 and 31.3%, p <0.001). The unexpected low frequency of the G1896A mutation in the sgF1b (despite carrying 1858T) prompted us to perform a further analysis in order to identify genotype-specific features that could justify the pattern mutations observed. A region encompassing nucleotides 1720 to 1920 showed the higher dissimilarity between sgF1b and sgF4. Genotypes and subgenotypes carrying the 1727G, 1740C and 1773T polymorphisms were prevented to mutate position 1896. DISCUSSION: HBeAg seroconversion is a critical event in the natural history of HBV infection. Differences in the HBeAg positivity rate might be relevant since different studies have observed that delayed HBeAg seroconversion is associated with a more severe clinical course of infection, highlighting the critical role that genotypes/subgenotypes might play in the progression of HBV infection. Polymorphisms in the regions 1720 to 1920 could be involved in the molecular mechanisms underlying seroconversion of each genotype/subgenotype.


Assuntos
Genótipo , Vírus da Hepatite B/genética , Hepatite B/epidemiologia , Hepatite B/virologia , Análise de Variância , Argentina/epidemiologia , Sequência de Bases , Estudos Transversais , Humanos , Dados de Sequência Molecular , Mutação/genética , Prevalência , Regiões Promotoras Genéticas/genética , Análise de Sequência de DNA , Especificidade da Espécie
18.
In. Ministerio de Salud de Argentina-MSALARG. Comisión Nacional de Salud Investiga. Anuario 2011. Ciudad Autónoma de Buenos Aires, Argentina.Ministerio de Salud de la Nacion, 2013. p.113-114.
Monografia em Espanhol | ARGMSAL | ID: biblio-994178

RESUMO

La alta endemicidad de infección por virus de hepatitis B (VHB) que presentandiversos grupos indígenas de América del Sur constituye un serio problema desalud pública.ObjetivosConocer la prevalencia de infección por VHB en comunidades Mbya-Guaraníesresidentes en la región centro de la provincia de Misiones, y evaluar factores deriesgo y patrones de adquisición de la infección.MétodosSe realizó un estudio transversal en 202 voluntarios pertenecientes a seis comunidades.Se obtuvieron datos de interés epidemiológico y muestras de sangrepara detectar marcadores serológicos de infección.ResultadosNo se detectaron casos positivos para antígenos de superficie del VHB (HBsAg),lo que indicó una baja endemicidad de infección en las comunidades analizadas.Se identificaron conductas de riesgo, que serían potenciales vías para latransmisión sexual y horizontal del VHB.ConclusionesLa preservación de las normas socioculturales y el relativo aislamiento que caracterizaa estas comunidades podrían explicar la ausencia de hepatitis B.


Assuntos
Bolsas de Estudo , Fatores de Risco , Povos Indígenas , Prevalência , Vírus da Hepatite B
19.
In. Ministerio de Salud de Argentina-MSALARG. Comisión Nacional Salud Investiga. Becas de investigación Ramón Carrillo - Arturo Oñativia: anuario 2010. Buenos Aires, Ministerio de Salud, 2012. p.76-77. (127614).
Monografia em Inglês, Espanhol | ARGMSAL | ID: biblio-992206

RESUMO

INTRODUCCION: Se estima que en el mundo existen 2.000 millones de personas infectadas por el virus de la hepatitis B (VHB), de los cuales 400 millones presentan infección crónica y 1 millón muere anualmente debido a falla hepática. La transmisión del VHB entre los convivientes de un portador crónico es un evento precuente. La seroprevalencia de marcadores de infección por VHB en estos grupos de riesgo supera la esperada para la población general. La importancia de la transmisión horizontal de la hepatitis B en los núcleos familiares radica en el mayor riesgo de que sus integrantes, en particular los niños, adquieran la enfermedad y sufran graves complicaciones.OBJETIVO: Determinar la prevalencia de infección en familiares y convivientes de portadores crónicos del VHB y evaluar los posibles mecanismos de transmisión del virus de la región.METODOS: Se realizó un estudio descriptivo para determinar la prevalencia de la infección en familiares de donantes del Banco de Sangre Central de la Provincia de Misiones (BSCM) con marcadores serológicos de infección crónica (estudio transversal en 40 casos índice y 50 familiares y convivientes). Se obtuvieron datos de interés epidemiológico y muestras de sangre para detectar marcadores serológicos de infección.RESULTADOS: En los familiares y convivientes se reportaron 6% de infecciones crónicas, 22% de infecciones resueltas y 72% de individuos sin exposición al virus.CONCLUSIONES: La prevalencia total de infección por VHB fue mayor a la hallada en la población de referencia, con significancia estadística, lo que evidenció la existencia de transmisión intrafamiliar. Dado que no se logró identificar factores de riesgo, es necesario llevar a cabo más investigaciones para determinar cuáles son los mecanismos de transmisión intrafamiliar en la región y aplicar las medidas de profilaxis adecuadas.


INTRODUCTION: Hepatitis B virus (HBV) affecs an estimated 2 billion persons worldwide, of which 400 million remain chronically infected, and 1 million die of HBV-related liver diseases annually. HBV transmission between household contacts of a chronic carrier is a frequent event. The serological prevalence of HBV infection markeris in these risk groups is higher than the one observed in general population. The horizontal transmission risk is related to the severe forms of the disease, particularly in children.OBJECTIVE: To evaluate the prevalence and the modes of transmission of HBV, within infected subjects and their household in the region.METHODS: A descriptive study was conducted to determine the prevalence of infection in family members of donors of the Central Blood Bank of Misiones Province (BSCM) with serological markers of chronic infection (cross-sectional study performed in 40 index cases and 50 household contacts). Data of epidemiological interest and blood samples were collected to detect serological markers of infection.RESULTS: The prevalence in household contacts was 6% of chronic infections, 22% of resolved infections and 72% of individuals without previous virus exposure.CONCLUSIONS: The overall prevalence of HBV infection was higher than for the reference population, with statistical significance, showing intrafamiliar transmission. Since no risk factors were identified, it is necessary to do more research to clarify the intrafamiliar impact and transmission mechanisms in the region.


Assuntos
Fatores de Risco , Hepatite B , Transmissão de Doença Infecciosa , Argentina , Saúde Pública
20.
In. Ministerio de Salud de Argentina-MSALARG. Comisión Nacional Salud Investiga. Becas de investigación Ramón Carrillo - Arturo Oñativia: anuario 2010. Buenos Aires, Ministerio de Salud, 2012. p.76-77. (127585).
Monografia em Inglês, Espanhol | BINACIS | ID: bin-127585

RESUMO

INTRODUCCION: Se estima que en el mundo existen 2.000 millones de personas infectadas por el virus de la hepatitis B (VHB), de los cuales 400 millones presentan infección crónica y 1 millón muere anualmente debido a falla hepática. La transmisión del VHB entre los convivientes de un portador crónico es un evento precuente. La seroprevalencia de marcadores de infección por VHB en estos grupos de riesgo supera la esperada para la población general. La importancia de la transmisión horizontal de la hepatitis B en los núcleos familiares radica en el mayor riesgo de que sus integrantes, en particular los niños, adquieran la enfermedad y sufran graves complicaciones.OBJETIVO: Determinar la prevalencia de infección en familiares y convivientes de portadores crónicos del VHB y evaluar los posibles mecanismos de transmisión del virus de la región.METODOS: Se realizó un estudio descriptivo para determinar la prevalencia de la infección en familiares de donantes del Banco de Sangre Central de la Provincia de Misiones (BSCM) con marcadores serológicos de infección crónica (estudio transversal en 40 casos índice y 50 familiares y convivientes). Se obtuvieron datos de interés epidemiológico y muestras de sangre para detectar marcadores serológicos de infección.RESULTADOS: En los familiares y convivientes se reportaron 6% de infecciones crónicas, 22% de infecciones resueltas y 72% de individuos sin exposición al virus.CONCLUSIONES: La prevalencia total de infección por VHB fue mayor a la hallada en la población de referencia, con significancia estadística, lo que evidenció la existencia de transmisión intrafamiliar. Dado que no se logró identificar factores de riesgo, es necesario llevar a cabo más investigaciones para determinar cuáles son los mecanismos de transmisión intrafamiliar en la región y aplicar las medidas de profilaxis adecuadas.


INTRODUCTION: Hepatitis B virus (HBV) affecs an estimated 2 billion persons worldwide, of which 400 million remain chronically infected, and 1 million die of HBV-related liver diseases annually. HBV transmission between household contacts of a chronic carrier is a frequent event. The serological prevalence of HBV infection markeris in these risk groups is higher than the one observed in general population. The horizontal transmission risk is related to the severe forms of the disease, particularly in children.OBJECTIVE: To evaluate the prevalence and the modes of transmission of HBV, within infected subjects and their household in the region.METHODS: A descriptive study was conducted to determine the prevalence of infection in family members of donors of the Central Blood Bank of Misiones Province (BSCM) with serological markers of chronic infection (cross-sectional study performed in 40 index cases and 50 household contacts). Data of epidemiological interest and blood samples were collected to detect serological markers of infection.RESULTS: The prevalence in household contacts was 6% of chronic infections, 22% of resolved infections and 72% of individuals without previous virus exposure.CONCLUSIONS: The overall prevalence of HBV infection was higher than for the reference population, with statistical significance, showing intrafamiliar transmission. Since no risk factors were identified, it is necessary to do more research to clarify the intrafamiliar impact and transmission mechanisms in the region.


Assuntos
Hepatite B , Transmissão de Doença Infecciosa , Fatores de Risco , Argentina , Saúde Pública
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