Detalhe da pesquisa
1.
Neoantigen quality predicts immunoediting in survivors of pancreatic cancer.
Nature
; 606(7913): 389-395, 2022 06.
Artigo
Inglês
| MEDLINE | ID: mdl-35589842
2.
Infer global, predict local: Quantity-relevance trade-off in protein fitness predictions from sequence data.
PLoS Comput Biol
; 19(10): e1011521, 2023 Oct.
Artigo
Inglês
| MEDLINE | ID: mdl-37883593
3.
Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment.
PLoS Comput Biol
; 19(11): e1011621, 2023 Nov.
Artigo
Inglês
| MEDLINE | ID: mdl-37976326
4.
Mutational Paths with Sequence-Based Models of Proteins: From Sampling to Mean-Field Characterization.
Phys Rev Lett
; 130(15): 158402, 2023 Apr 14.
Artigo
Inglês
| MEDLINE | ID: mdl-37115874
5.
Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection.
PLoS Comput Biol
; 18(9): e1010561, 2022 09.
Artigo
Inglês
| MEDLINE | ID: mdl-36174101
6.
The Heterogeneous Landscape and Early Evolution of Pathogen-Associated CpG Dinucleotides in SARS-CoV-2.
Mol Biol Evol
; 38(6): 2428-2445, 2021 05 19.
Artigo
Inglês
| MEDLINE | ID: mdl-33555346
7.
Improving sequence-based modeling of protein families using secondary-structure quality assessment.
Bioinformatics
; 37(22): 4083-4090, 2021 11 18.
Artigo
Inglês
| MEDLINE | ID: mdl-34117879
8.
Probing T-cell response by sequence-based probabilistic modeling.
PLoS Comput Biol
; 17(9): e1009297, 2021 09.
Artigo
Inglês
| MEDLINE | ID: mdl-34473697
9.
Parameters and determinants of responses to selection in antibody libraries.
PLoS Comput Biol
; 17(3): e1008751, 2021 03.
Artigo
Inglês
| MEDLINE | ID: mdl-33765014
10.
Low-Dimensional Manifolds Support Multiplexed Integrations in Recurrent Neural Networks.
Neural Comput
; 33(4): 1063-1112, 2021 03 26.
Artigo
Inglês
| MEDLINE | ID: mdl-33513327
11.
Capacity-Resolution Trade-Off in the Optimal Learning of Multiple Low-Dimensional Manifolds by Attractor Neural Networks.
Phys Rev Lett
; 124(4): 048302, 2020 Jan 31.
Artigo
Inglês
| MEDLINE | ID: mdl-32058781
12.
Learning Compositional Representations of Interacting Systems with Restricted Boltzmann Machines: Comparative Study of Lattice Proteins.
Neural Comput
; 31(8): 1671-1717, 2019 08.
Artigo
Inglês
| MEDLINE | ID: mdl-31260391
13.
Can Grid Cell Ensembles Represent Multiple Spaces?
Neural Comput
; 31(12): 2324-2347, 2019 12.
Artigo
Inglês
| MEDLINE | ID: mdl-31614108
14.
Integration and multiplexing of positional and contextual information by the hippocampal network.
PLoS Comput Biol
; 14(8): e1006320, 2018 08.
Artigo
Inglês
| MEDLINE | ID: mdl-30106966
15.
Inverse statistical physics of protein sequences: a key issues review.
Rep Prog Phys
; 81(3): 032601, 2018 03.
Artigo
Inglês
| MEDLINE | ID: mdl-29120346
16.
Distinguishing the immunostimulatory properties of noncoding RNAs expressed in cancer cells.
Proc Natl Acad Sci U S A
; 112(49): 15154-9, 2015 Dec 08.
Artigo
Inglês
| MEDLINE | ID: mdl-26575629
17.
Collective Phase in Resource Competition in a Highly Diverse Ecosystem.
Phys Rev Lett
; 118(4): 048103, 2017 Jan 27.
Artigo
Inglês
| MEDLINE | ID: mdl-28186794
18.
Functional connectivity models for decoding of spatial representations from hippocampal CA1 recordings.
J Comput Neurosci
; 43(1): 17-33, 2017 Aug.
Artigo
Inglês
| MEDLINE | ID: mdl-28484899
19.
Benchmarking Inverse Statistical Approaches for Protein Structure and Design with Exactly Solvable Models.
PLoS Comput Biol
; 12(5): e1004889, 2016 05.
Artigo
Inglês
| MEDLINE | ID: mdl-27177270
20.
Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction.
Nucleic Acids Res
; 43(21): 10444-55, 2015 Dec 02.
Artigo
Inglês
| MEDLINE | ID: mdl-26420827