Detalhe da pesquisa
1.
The physical and evolutionary energy landscapes of devolved protein sequences corresponding to pseudogenes.
Proc Natl Acad Sci U S A
; 121(21): e2322428121, 2024 May 21.
Artigo
Inglês
| MEDLINE | ID: mdl-38739795
2.
In vivo functional phenotypes from a computational epistatic model of evolution.
Proc Natl Acad Sci U S A
; 121(6): e2308895121, 2024 Feb 06.
Artigo
Inglês
| MEDLINE | ID: mdl-38285950
3.
A VDAC1-mediated NEET protein chain transfers [2Fe-2S] clusters between the mitochondria and the cytosol and impacts mitochondrial dynamics.
Proc Natl Acad Sci U S A
; 119(7)2022 02 15.
Artigo
Inglês
| MEDLINE | ID: mdl-35135884
4.
Coevolutionary Information Captures Catalytic Functions and Reveals Divergent Roles of Terpene Synthase Interdomain Connections.
Biochemistry
; 63(3): 355-366, 2024 Feb 06.
Artigo
Inglês
| MEDLINE | ID: mdl-38206111
5.
Epistatic contributions promote the unification of incompatible models of neutral molecular evolution.
Proc Natl Acad Sci U S A
; 117(11): 5873-5882, 2020 03 17.
Artigo
Inglês
| MEDLINE | ID: mdl-32123092
6.
Computational compensatory mutation discovery approach: Predicting a PARP1 variant rescue mutation.
Biophys J
; 121(19): 3663-3673, 2022 10 04.
Artigo
Inglês
| MEDLINE | ID: mdl-35642254
7.
Frustration and Direct-Coupling Analyses to Predict Formation and Function of Adeno-Associated Virus.
Biophys J
; 120(3): 489-503, 2021 02 02.
Artigo
Inglês
| MEDLINE | ID: mdl-33359833
8.
Engineering repressors with coevolutionary cues facilitates toggle switches with a master reset.
Nucleic Acids Res
; 47(10): 5449-5463, 2019 06 04.
Artigo
Inglês
| MEDLINE | ID: mdl-31162606
9.
Engineering DNA recognition and allosteric response properties of TetR family proteins by using a module-swapping strategy.
Nucleic Acids Res
; 47(16): 8913-8925, 2019 09 19.
Artigo
Inglês
| MEDLINE | ID: mdl-31392336
10.
Information Theory in Molecular Evolution: From Models to Structures and Dynamics.
Entropy (Basel)
; 23(4)2021 Apr 19.
Artigo
Inglês
| MEDLINE | ID: mdl-33921557
11.
ELIHKSIR Web Server: Evolutionary Links Inferred for Histidine Kinase Sensors Interacting with Response Regulators.
Entropy (Basel)
; 23(2)2021 Jan 30.
Artigo
Inglês
| MEDLINE | ID: mdl-33573110
12.
Structural complementarity of distance constraints obtained from chemical cross-linking and amino acid coevolution.
Proteins
; 88(4): 625-632, 2020 04.
Artigo
Inglês
| MEDLINE | ID: mdl-31693206
13.
Evolutionary entrenchment in immune proteins selects against stabilizing mutations.
Proc Natl Acad Sci U S A
; 119(49): e2216087119, 2022 12 06.
Artigo
Inglês
| MEDLINE | ID: mdl-36449544
14.
Coevolutionary Couplings Unravel PAM-Proximal Constraints of CRISPR-SpCas9.
Biophys J
; 117(9): 1684-1691, 2019 11 05.
Artigo
Inglês
| MEDLINE | ID: mdl-31648792
15.
Enhancing protein fold determination by exploring the complementary information of chemical cross-linking and coevolutionary signals.
Bioinformatics
; 34(13): 2201-2208, 2018 07 01.
Artigo
Inglês
| MEDLINE | ID: mdl-29447388
16.
DCA-MOL: A PyMOL Plugin To Analyze Direct Evolutionary Couplings.
J Chem Inf Model
; 59(2): 625-629, 2019 02 25.
Artigo
Inglês
| MEDLINE | ID: mdl-30632747
17.
Reply to Patel and Kumar: Epistasis not critical to rate distributions but key in heterotachy, overdispersion, and evolutionary Stokes shift.
Proc Natl Acad Sci U S A
; 118(18)2021 05 04.
Artigo
Inglês
| MEDLINE | ID: mdl-33875550
18.
Elucidating the druggable interface of protein-protein interactions using fragment docking and coevolutionary analysis.
Proc Natl Acad Sci U S A
; 113(50): E8051-E8058, 2016 12 13.
Artigo
Inglês
| MEDLINE | ID: mdl-27911825
19.
Protein conformations à la carte, a step further in de novo protein design.
Proc Natl Acad Sci U S A
; 117(16): 8674-8676, 2020 04 21.
Artigo
Inglês
| MEDLINE | ID: mdl-32291334
20.
The Fe-S cluster-containing NEET proteins mitoNEET and NAF-1 as chemotherapeutic targets in breast cancer.
Proc Natl Acad Sci U S A
; 112(12): 3698-703, 2015 Mar 24.
Artigo
Inglês
| MEDLINE | ID: mdl-25762074