Detalhe da pesquisa
1.
Enterococci enhance Clostridioides difficile pathogenesis.
Nature
; 611(7937): 780-786, 2022 11.
Artigo
Inglês
| MEDLINE | ID: mdl-36385534
2.
Spatial transcriptome-guided multi-scale framework connects P. aeruginosa metabolic states to oxidative stress biofilm microenvironment.
PLoS Comput Biol
; 20(4): e1012031, 2024 Apr.
Artigo
Inglês
| MEDLINE | ID: mdl-38669236
3.
Identifying metabolic adaptations characteristic of cardiotoxicity using paired transcriptomics and metabolomics data integrated with a computational model of heart metabolism.
PLoS Comput Biol
; 20(2): e1011919, 2024 Feb.
Artigo
Inglês
| MEDLINE | ID: mdl-38422168
4.
Reconstructor: a COBRApy compatible tool for automated genome-scale metabolic network reconstruction with parsimonious flux-based gap-filling.
Bioinformatics
; 39(6)2023 06 01.
Artigo
Inglês
| MEDLINE | ID: mdl-37279743
5.
Metabolic modeling of sex-specific liver tissue suggests mechanism of differences in toxicological responses.
PLoS Comput Biol
; 19(8): e1010927, 2023 08.
Artigo
Inglês
| MEDLINE | ID: mdl-37603574
6.
Network analysis of toxin production in Clostridioides difficile identifies key metabolic dependencies.
PLoS Comput Biol
; 19(4): e1011076, 2023 04.
Artigo
Inglês
| MEDLINE | ID: mdl-37099624
7.
A computational model of Pseudomonas syringae metabolism unveils a role for branched-chain amino acids in Arabidopsis leaf colonization.
PLoS Comput Biol
; 19(12): e1011651, 2023 Dec.
Artigo
Inglês
| MEDLINE | ID: mdl-38150474
8.
Histone Deacetylase Inhibition by Gut Microbe-Generated Short-Chain Fatty Acids Entrains Intestinal Epithelial Circadian Rhythms.
Gastroenterology
; 163(5): 1377-1390.e11, 2022 11.
Artigo
Inglês
| MEDLINE | ID: mdl-35934064
9.
Quantifying cumulative phenotypic and genomic evidence for procedural generation of metabolic network reconstructions.
PLoS Comput Biol
; 18(2): e1009341, 2022 02.
Artigo
Inglês
| MEDLINE | ID: mdl-35130271
10.
Comparative analyses of parasites with a comprehensive database of genome-scale metabolic models.
PLoS Comput Biol
; 18(2): e1009870, 2022 02.
Artigo
Inglês
| MEDLINE | ID: mdl-35196325
11.
Megasphaera in the Stool Microbiota Is Negatively Associated With Diarrheal Cryptosporidiosis.
Clin Infect Dis
; 73(6): e1242-e1251, 2021 09 15.
Artigo
Inglês
| MEDLINE | ID: mdl-33684930
12.
Perinatal Outcomes of Asynchronous Influenza Vaccination, Ceará, Brazil, 2013-2018.
Emerg Infect Dis
; 27(9): 2409-2420, 2021.
Artigo
Inglês
| MEDLINE | ID: mdl-34424181
13.
Community standards to facilitate development and address challenges in metabolic modeling.
Mol Syst Biol
; 16(8): e9235, 2020 08.
Artigo
Inglês
| MEDLINE | ID: mdl-32845080
14.
Predicting changes in renal metabolism after compound exposure with a genome-scale metabolic model.
Toxicol Appl Pharmacol
; 412: 115390, 2021 02 01.
Artigo
Inglês
| MEDLINE | ID: mdl-33387578
15.
Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environments.
PLoS Comput Biol
; 16(4): e1007099, 2020 04.
Artigo
Inglês
| MEDLINE | ID: mdl-32298268
16.
Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions.
PLoS Comput Biol
; 16(4): e1007847, 2020 04.
Artigo
Inglês
| MEDLINE | ID: mdl-32348298
17.
History of antibiotic adaptation influences microbial evolutionary dynamics during subsequent treatment.
PLoS Biol
; 15(8): e2001586, 2017 Aug.
Artigo
Inglês
| MEDLINE | ID: mdl-28792497
18.
Reconciling high-throughput gene essentiality data with metabolic network reconstructions.
PLoS Comput Biol
; 15(4): e1006507, 2019 04.
Artigo
Inglês
| MEDLINE | ID: mdl-30973869
19.
Gram-negative Microbiota Blooms in Premature Twins Discordant for Parenteral Nutrition-associated Cholestasis.
J Pediatr Gastroenterol Nutr
; 70(5): 640-644, 2020 05.
Artigo
Inglês
| MEDLINE | ID: mdl-31939866
20.
Minimum Bactericidal Concentration of Ciprofloxacin to Pseudomonas aeruginosa Determined Rapidly Based on Pyocyanin Secretion.
Sens Actuators B Chem
; 3122020 Jun 01.
Artigo
Inglês
| MEDLINE | ID: mdl-32606491