RESUMO
Human Adenoviruses (HAdVs) are etiological agents of different syndromes such as gastroenteritis, cystitis, ocular, and respiratory diseases, and infection by these viruses may cause alterations in cellular homeostasis. The objective of the study was the proteomic analysis of A-549 cells infected with HAdV-40 using LC-MS. At 30 h of infection, the quantitative analysis revealed 336 differentially expressed proteins. From them, 206 were induced (up-regulated) and 130 were suppressed (down-regulated). The majority of up-regulated proteins were related to energy, cellular organization, stress response, and apoptosis pathways. It was observed alteration of cell metabolism with increase of the glycolytic pathway, ß-oxidation, and respiratory chain. Also, the results suggest cytoskeleton reorganization and apoptosis induction. The data can improve knowledge about the replication of HAdV-40 in cell culture considering the proteins related to distinct metabolic pathways induced by viral infection in A-549 cells.
Assuntos
Adenovírus Humanos/fisiologia , Proteoma , Linhagem Celular Tumoral , Pré-Escolar , Cromatografia Líquida , Humanos , Espectrometria de Massas , Mucosa Respiratória/virologiaRESUMO
BACKGROUND: The fungus Paracoccidioides spp is the agent of paracoccidioidomycosis (PCM), a pulmonary mycosis acquired by the inhalation of fungal propagules. Paracoccidioides malate synthase (PbMLS) is important in the infectious process of Paracoccidioides spp because the transcript is up-regulated during the transition from mycelium to yeast and in yeast cells during phagocytosis by murine macrophages. In addition, PbMLS acts as an adhesin in Paracoccidioides spp. The evidence for the multifunctionality of PbMLS indicates that it could interact with other proteins from the fungus and host. The objective of this study was to identify and analyze proteins that possibly bind to PbMLS (PbMLS-interacting proteins) because protein interactions are intrinsic to cell processes, and it might be possible to infer the function of a protein through the identification of its ligands. RESULTS: The search for interactions was performed using an in vivo assay with a two-hybrid library constructed in S. cerevisiae; the transcripts were sequenced and identified. In addition, an in vitro assay using pull-down GST methodology with different protein extracts (yeast, mycelium, yeast-secreted proteins and macrophage) was performed, and the resulting interactions were identified by mass spectrometry (MS). Some of the protein interactions were confirmed by Far-Western blotting using specific antibodies, and the interaction of PbMLS with macrophages was validated by indirect immunofluorescence and confocal microscopy. In silico analysis using molecular modeling, dynamics and docking identified the amino acids that were involved in the interactions between PbMLS and PbMLS-interacting proteins. Finally, the interactions were visualized graphically using Osprey software. CONCLUSION: These observations indicate that PbMLS interacts with proteins that are in different functional categories, such as cellular transport, protein biosynthesis, modification and degradation of proteins and signal transduction. These data suggest that PbMLS could play different roles in the fungal cell.
Assuntos
Malato Sintase/metabolismo , Paracoccidioides/enzimologia , Mapeamento de Interação de Proteínas , Far-Western Blotting , Centrifugação , Espectrometria de Massas , Microscopia Confocal , Microscopia de Fluorescência , Simulação de Dinâmica Molecular , Técnicas do Sistema de Duplo-HíbridoRESUMO
Paracoccidioides brasiliensis, a fungal pathogen of humans, switches from a filamentous spore-forming mold in the soil to a pathogenic budding-yeast in the human host. Dimorphism is regulated mainly by the temperature of incubation. Representational difference analysis (RDA) was performed between yeast cells of isolate Pb01 and from isolate Pb4940, the last growing as mycelia at the host temperature. Transcripts exhibiting increased expression during development of the yeast parasitic phase comprised those involved mainly in response to stress, transcriptional regulation and nitrogen metabolism. In this way, the isolate Pb01 increased the expression of a variety of transcripts encoding cell rescue proteins such as the heat shock protein HSP30, alpha-trehalose-phosphate synthase and DDR48 stress protein, suggesting the relevance of the defense mechanism against oxidative/heat shock stress in the fungal yeast phase. Other differentially expressed genes between the two isolates included those coding for cell wall/membrane-related proteins, suggesting the relevance of the fungal surface and it's remodeling to the dimorphism. We provide a set of novel yeast preferentially expressed genes and demonstrate the effectiveness of RDA for studying P. brasiliensis dimorphism.
Assuntos
Genes Fúngicos , Paracoccidioides/genética , Paracoccidioides/patogenicidade , Paracoccidioidomicose/microbiologia , Microbiologia do Solo , Fatores de Virulência/genética , Expressão Gênica , Perfilação da Expressão Gênica , Biblioteca Gênica , Humanos , Regulação para Cima , Fatores de Virulência/metabolismoRESUMO
Paracoccidioides brasiliensis causes paracoccidioidomycosis, a systemic mycosis in Latin America. Formamidases hydrolyze formamide, putatively plays a role in fungal nitrogen metabolism. An abundant 45-kDa protein was identified as the P. brasiliensis formamidase. In this study, recombinant formamidase was overexpressed in bacteria and a polyclonal antibody to this protein was produced. We identified a 180-kDa protein species reactive to the antibody produced in mice against the P. brasiliensis recombinant purified formamidase of 45 kDa. The 180-kDa purified protein yielded a heat-denatured species of 45 kDa. Both protein species of 180 and 45 kDa were identified as formamidase by peptide mass fingerprinting using MS. The identical mass spectra generated by the 180 and the 45-kDa protein species indicated that the fungal formamidase is most likely homotetrameric in its native conformation. Furthermore, the purified formamidase migrated as a protein of 191 kDa in native polyacrylamide gel electrophoresis, thus revealing that the enzyme forms a homotetrameric structure in its native state. This enzyme is present in the fungus cytoplasm and the cell wall. Use of a yeast two-hybrid system revealed cell wall membrane proteins, in addition to cytosolic proteins interacting with formamidase. These data provide new insights into formamidase structure as well as potential roles for formamidase and its interaction partners in nitrogen metabolism.
Assuntos
Amidoidrolases/metabolismo , Paracoccidioides/enzimologia , Multimerização Proteica , Amidoidrolases/química , Western Blotting , Parede Celular/química , Citoplasma/química , Eletroforese em Gel de Poliacrilamida , Espectrometria de Massas , Microscopia Imunoeletrônica , Peso Molecular , Paracoccidioides/química , Ligação Proteica , Mapeamento de Interação de Proteínas , Técnicas do Sistema de Duplo-HíbridoRESUMO
Paracoccidioides brasiliensis is a thermally dimorphic fungus that causes paracoccidioidomycosis, a human systemic disease prevalent in Latin America. Proteases have been described as playing an important role in the host invasion process in many pathogenic microorganisms. Here we describe the identification and characterization of a secreted aspartyl protease (PbSAP), isolated from a cDNA library constructed with RNAs of mycelia transitioning to yeast cells. Recombinant PbSAP was produced in Escherichia coli, and the purified protein was used to develop a polyclonal antibody that was able to detect a 66 kDa protein in the P. brasiliensis proteome. PbSAP was detected in culture supernatants of P. brasiliensis and this data strongly suggest that it is a secreted molecule. The protein was located in the yeast cell wall, as determined by immunoelectron microscopy. In vitro deglycosylation assays with endoglycosidase H, and in vivo inhibition of the glycosylation by tunicamycin demonstrated N-glycosylation of the PbSAP molecule. Zymogram assays indicated the presence of aspartyl protease gelatinolytic activity in yeast cells and culture supernatant.
Assuntos
Ácido Aspártico Proteases/química , Proteínas Fúngicas/química , Paracoccidioides/enzimologia , Paracoccidioidomicose/microbiologia , Sequência de Aminoácidos , Ácido Aspártico Proteases/genética , Ácido Aspártico Proteases/metabolismo , DNA Complementar/genética , Eletroforese em Gel de Poliacrilamida , Precursores Enzimáticos , Escherichia coli/genética , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Gelatina/metabolismo , Glicosilação , Humanos , Immunoblotting , Dados de Sequência Molecular , Paracoccidioides/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alinhamento de SequênciaRESUMO
Paracoccidioides brasiliensis causes infection through inhalation by the host of airborne propagules from the mycelium phase of the fungus. This fungus reaches the lungs, differentiates into the yeast form and is then disseminated to virtually all parts of the body. Here we review the identification of differentially-expressed genes in host-interaction conditions. These genes were identified by analyzing expressed sequence tags (ESTs) from P. brasiliensis cDNA libraries. The P. brasiliensis was recovered from infected mouse liver as well as from fungal yeast cells incubated in human blood and plasma, mimicking fungal dissemination to organs and tissues and sites of infection with inflammation, respectively. In addition, ESTs from a cDNA library of P. brasiliensis mycelium undergoing the transition to yeast were previously analyzed. Together, these studies reveal significant changes in the expression of a number of genes of potential importance in the host-fungus interaction. In addition, the unique and divergent representation of transcripts when the cDNA libraries are compared suggests differential gene expression in response to specific niches in the host. This analysis of gene expression patterns provides details about host-pathogen interactions and peculiarities of sites within the host.
Assuntos
Etiquetas de Sequências Expressas , Perfilação da Expressão Gênica , Regulação Fúngica da Expressão Gênica/genética , Interações Hospedeiro-Patógeno/genética , Paracoccidioides/genética , Animais , DNA Complementar/análise , Biblioteca Gênica , Humanos , Fígado/microbiologia , Camundongos , Paracoccidioides/patogenicidadeRESUMO
Group A rotaviruses are the main cause of acute gastroenteritis in children worldwide. The intermediate capsid protein VP6 encoded by segment 6 of the dsRNA genome is the major structural component of the virus and it is highly antigenic and immunogenic. VP6 is responsible for group and subgroup (SG) specificities, allowing classification of group A rotavirus into SG I, SG II, SG I + II, and SG non-I-non-II. VP6-encoding gene of 154 group A human rotavirus samples of different G and P genotypes recovered from children in three cities of Central West region of Brazil was amplified by reverse transcription-polymerase chain reaction followed by sequencing and phylogenetic analysis. Two distinct genetic groups could be recognized: VP6 genogroups I and II. Sequences analysis also revealed that all samples identified as VP6 genogroup I were associated with NSP4 genotype A, whereas samples identified as VP6 genogroup II were associated with NSP4 genotype B. This is the first study in Central West region regarding genetic variability of the VP6 gene. Further molecular surveillance of rotavirus strains is needed to understand better the occurrence of VP6 gene diversity in Brazil and the significance of VP6 for the control and prevention of rotavirus gastroenteritis.
Assuntos
Antígenos Virais/genética , Proteínas do Capsídeo/genética , Gastroenterite/epidemiologia , Gastroenterite/virologia , Infecções por Rotavirus/epidemiologia , Infecções por Rotavirus/virologia , Rotavirus/classificação , Rotavirus/isolamento & purificação , Sequência de Aminoácidos , Brasil/epidemiologia , Pré-Escolar , Análise por Conglomerados , Genótipo , Humanos , Epidemiologia Molecular , Dados de Sequência Molecular , Filogenia , RNA Viral/genética , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Rotavirus/genética , Alinhamento de Sequência , Análise de Sequência de DNA , Homologia de SequênciaRESUMO
Hepatitis A virus (HAV) infection is a public health problem worldwide and the virus has been classified into six genotypes. In Brazil, the only genotype that has been found is genotype I, predominately from subgenotype IA. Here, the HAV genotypes were analyzed of 18 isolates circulating between 1996-2001 in Goiânia, state of Goiás, Brazil. Viral RNA was extracted from 18 serum samples and amplified (RT-PCR/nested-PCR), followed by the genomic sequencing of the VP1/2A junction region of the HAV genome. Sequences of 168 nucleotides were compared and analyzed using the BLAST N, Clustal X and PAUP v. 4.10b programs. All samples were classified as genotype I, with 10 belonging to subgenotype IA and eight to subgenotype IB. The subgenotype IA isolates showed greater diversity than the subgenotype IB isolates at the nucleotide level. Elevated identity values were found between isolates obtained in this study and those from other regions of the world, including Brazil, highlighting the high conservation among different isolates of this virus. However, changes in the HAV subgenotype circulation could also be observed during the evaluated period.
Assuntos
Vírus da Hepatite A/genética , Hepatite A/virologia , RNA Viral/genética , Adolescente , Adulto , Sequência de Bases , Brasil , Criança , Pré-Escolar , Feminino , Vírus da Hepatite A/isolamento & purificação , Humanos , Masculino , Dados de Sequência Molecular , Filogenia , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Adulto JovemRESUMO
Paracoccidioides brasiliensis causes infection through host inhalation of airborne propagules of the mycelial phase of the fungus, which reach the lungs, and then disseminate to virtually all parts of the human body. Here we describe the identification of differentially expressed genes in P. brasiliensis yeast cells, by analyzing cDNA populations from the fungus treated with human plasma, mimicking superficial infection sites with inflammation. Our analysis identified transcripts that are differentially represented. The transcripts upregulated in yeast cells during incubation in human plasma were predominantly related to fatty acid degradation, protein synthesis, sensing of osmolarity changes, cell wall remodeling and cell defense. The expression pattern of genes was independently confirmed.
Assuntos
Perfilação da Expressão Gênica , Paracoccidioides/genética , Plasma/fisiologia , Regulação Fúngica da Expressão Gênica , Glutamato-Amônia Ligase/genética , Humanos , Melaninas/biossíntese , Paracoccidioides/metabolismo , Serina Endopeptidases/genética , Transdução de Sinais , Dodecilsulfato de Sódio/farmacologiaRESUMO
Proteases perform a wide variety of functions inside and outside cells, regulating many biological processes. Infectious microorganisms use proteases, either secreted or attached to their cell surface to weaken and invade their hosts. Therefore, proteases are targets for drugs against a diverse set of diseases. Paracoccidioides brasiliensis is the most prevalent fungal pathogen causing systemic mycosis in Latin America. The development of paracoccidioidomycosis depends on interactions between fungal and host components and proteases have been described as important factors implicated in the mechanism of host colonization by fungi. The primary goal for this study is to present an overview of the transcriptome sequences--identified cDNAs that encode proteases. We obtained a total of 53 cDNAs encoding proteases; 15 were classified as ATP-independent, 12 as ATP-dependent, 22 as proteasome subunits, and 4 as deubiquitinating proteases. The mechanisms and biological activity of these proteases differ in substrate specificity and in catalytic mechanisms.
Assuntos
DNA Complementar/análise , Regulação Fúngica da Expressão Gênica/genética , Paracoccidioides/enzimologia , Peptídeo Hidrolases/genética , Transcrição Gênica/genética , Sequência de Bases , DNA Complementar/genética , Etiquetas de Sequências Expressas , Humanos , Dados de Sequência Molecular , Paracoccidioides/genética , Paracoccidioides/patogenicidade , Paracoccidioidomicose/virologia , VirulênciaRESUMO
The availability of the complete genome of the Gram-negative beta-proteobacterium Chromobacterium violaceum has increasingly impacted our understanding of this microorganism. This review focuses on the genomic organization and structural analysis of the deduced proteins of the chemosensory adaptation system of C. violaceum. C. violaceum has multiple homologues of most chemotaxis genes, organized mostly in clusters in the bacterial genome. We found at least 67 genes, distributed in 10 gene clusters, involved in the chemotaxis of C. violaceum. A close examination of the chemoreceptors methyl-accepting chemotaxis proteins (MCPs), and the deduced sequences of the members of the two-component signaling system revealed canonical motifs, described as essential for the function of the deduced proteins. The chemoreceptors found in C. violaceum include the complete repertoire of such genes described in bacteria, designated as tsr, tar, trg, and tap; 41 MCP loci were found in the C. violaceum genome. Also, the C. violaceum genome includes a large repertoire of the proteins of the chemosensory transducer system. Multiple homologues of bacterial chemotaxis genes, including CheA, CheB, CheD, CheR, CheV, CheY, CheZ, and CheW, were found in the C. violaceum genome.
Assuntos
Proteínas de Bactérias/genética , Quimiotaxia/genética , Chromobacterium/genética , Flagelos/genética , Genes Bacterianos/genética , Proteínas de Bactérias/fisiologia , Quimiotaxia/fisiologia , Chromobacterium/fisiologia , Flagelos/fisiologia , Genes Bacterianos/fisiologia , Genoma Bacteriano , Proteínas de Membrana/genética , Proteínas de Membrana/fisiologia , Proteínas Quimiotáticas Aceptoras de MetilRESUMO
Iron is essential for the proliferation of fungal pathogens during infection. The availability of iron is limited due to its association with host proteins. Fungal pathogens have evolved different mechanisms to acquire iron from host; however, little is known regarding how Paracoccidioides species incorporate and metabolize this ion. In this work, host iron sources that are used by Paracoccidioides spp. were investigated. Robust fungal growth in the presence of the iron-containing molecules hemin and hemoglobin was observed. Paracoccidioides spp. present hemolytic activity and have the ability to internalize a protoporphyrin ring. Using real-time PCR and nanoUPLC-MSE proteomic approaches, fungal growth in the presence of hemoglobin was shown to result in the positive regulation of transcripts that encode putative hemoglobin receptors, in addition to the induction of proteins that are required for amino acid metabolism and vacuolar protein degradation. In fact, one hemoglobin receptor ortholog, Rbt5, was identified as a surface GPI-anchored protein that recognized hemin, protoporphyrin and hemoglobin in vitro. Antisense RNA technology and Agrobacterium tumefaciens-mediated transformation were used to generate mitotically stable Pbrbt5 mutants. The knockdown strain had a lower survival inside macrophages and in mouse spleen when compared with the parental strain, which suggested that Rbt5 could act as a virulence factor. In summary, our data indicate that Paracoccidioides spp. can use hemoglobin as an iron source most likely through receptor-mediated pathways that might be relevant for pathogenic mechanisms.
Assuntos
Proteínas Fúngicas/metabolismo , Hemoglobinas/metabolismo , Paracoccidioides/metabolismo , Receptores de Superfície Celular/metabolismo , Animais , Linhagem Celular , Eritrócitos , Proteínas Fúngicas/genética , Heme/metabolismo , Hemólise , Ferro/metabolismo , Proteínas de Ligação ao Ferro/metabolismo , Masculino , Camundongos , Camundongos Endogâmicos BALB C , Paracoccidioides/crescimento & desenvolvimento , Receptores de Superfície Celular/genética , OvinosRESUMO
An efficient oxidative stress response is important to the fungal pathogen Paracoccidioides to survive within the human host. In this study, oxidative stress was mimicked by exposure of yeast cells to hydrogen peroxide (2 mM H2O2). To investigate the effect of H2O2 on the proteome of Paracoccidioides, we used a large scale 2-DE protein gel electrophoresis approach to analyze differentially expressed proteins/isoforms that were detected in early (2 h) and in late (6 h) oxidative stress treatments. All proteins/isoforms were grouped based on their functional categories that revealed a global activation of antioxidant enzymes, such as catalase, superoxide dismutase, cytochrome C peroxidase and thioredoxin. A view of the metabolic cell profile, as determined by proteomics, depicted a shift in the yeast cells metabolism as suggested by the activation of the pentose phosphate pathway, a great source of cellular reducing power in the form of NADPH. Additionally, in silico analyzes depicted 34 oxidoreductases proteins/isoforms putatively involved with defense against oxidative stress. Confirmatory assays of enzymatic activity, flow cytometry, transcript levels and NADPH measurements, produced data in agreement with proteomic analysis.
Assuntos
Proteínas Fúngicas/análise , Oxidantes/toxicidade , Estresse Oxidativo , Paracoccidioides/química , Paracoccidioides/efeitos dos fármacos , Proteoma/análise , Eletroforese em Gel Bidimensional , Peróxido de Hidrogênio/toxicidade , Espectrometria de Massas , Redes e Vias Metabólicas , Fatores de TempoRESUMO
Zinc plays a critical role in a diverse array of biochemical processes. However, an excess of zinc is deleterious to cells; therefore, cells require finely tuned homeostatic mechanisms to balance the uptake and the storage of zinc. There is also increasing evidence supporting the importance of zinc during infection. To understand better how Paracoccidioides adapts to zinc deprivation, we compared the two-dimensional (2D) gel protein profile of yeast cells during zinc starvation to yeast cells grown in a zinc rich condition. Protein spots were selected for comparative analysis based on the protein staining intensity, as determined by image analysis. In response to zinc deprivation, a total of 423 out of 845 protein spots showed a significant change in abundance. Quantitative RT-qPCR analysis of RNA from Paracoccidioides grown under zinc restricted conditions validated the correlation between the differentially regulated proteins and transcripts. According to the proteomic data, zinc deficiency may be a stressor to Paracoccidioides, as suggested by the upregulation of a number of proteins related to stress response, cell rescue, and virulence. Other process induced by zinc deprivation included gluconeogenesis. Conversely, the methylcitrate cycle was downregulated. Overall, the results indicate a remodelling of the Paracoccidioides response to the probable oxidative stress induced during zinc deprivation.
Assuntos
Proteínas Fúngicas/análise , Regulação Fúngica da Expressão Gênica , Paracoccidioides/química , Paracoccidioides/metabolismo , Proteoma/análise , Zinco/metabolismo , Eletroforese em Gel Bidimensional , Perfilação da Expressão Gênica , Processamento de Imagem Assistida por Computador , Reação em Cadeia da Polimerase em Tempo Real , Coloração e Rotulagem , Estresse FisiológicoRESUMO
Paracoccidioides, a complex of several phylogenetic species, is the causative agent of paracoccidioidomycosis. The ability of pathogenic fungi to develop a multifaceted response to the wide variety of stressors found in the host environment is important for virulence and pathogenesis. Extracellular proteins represent key mediators of the host-parasite interaction. To analyze the expression profile of the proteins secreted by Paracoccidioides, Pb01 mycelia and yeast cells, we used a proteomics approach combining two-dimensional electrophoresis with matrix-assisted laser desorption ionization quadrupole time-of-flight mass spectrometry (MALDI-Q-TOF MS/MS). From three biological replicates, 356 and 388 spots were detected, in mycelium and yeast cell secretomes, respectively. In this study, 160 non-redundant proteins/isoforms were indentified, including 30 and 24 proteins preferentially secreted in mycelia and yeast cells, respectively. In silico analyses revealed that 65% of the identified proteins/isoforms were secreted primarily via non-conventional pathways. We also investigated the influence of protein export inhibition in the phagocytosis of Paracoccidioides by macrophages. The addition of Brefeldin A to the culture medium significantly decreased the production of secreted proteins by both Paracoccidioides and internalized yeast cells by macrophages. In contrast, the addition of concentrated culture supernatant to the co-cultivation significantly increased the number of internalized yeast cells by macrophages. Importantly, the proteins detected in the fungal secretome were also identified within macrophages. These results indicate that Paracoccidioides extracellular proteins are important for the fungal interaction with the host.
Assuntos
Proteínas Fúngicas/metabolismo , Paracoccidioides/metabolismo , Proteoma/metabolismo , Animais , Adesão Celular , Ativação Enzimática , Macrófagos/imunologia , Macrófagos/microbiologia , Masculino , Camundongos , Micélio/metabolismo , Paracoccidioides/genética , Paracoccidioides/imunologia , Fagocitose/imunologia , Isoformas de Proteínas , Processamento de Proteína Pós-Traducional , Proteômica , Leveduras/genética , Leveduras/metabolismoRESUMO
The genus Babesia comprises protozoa that cause diseases known as babesiosis. Dogs are commonly affected by Babesia canis or Babesia gibsoni. Babesia canis is divided into the subspecies Babesia canis canis, Babesia canis vogeli and Babesia canis rossi. Among these, Babesia canis vogeli predominates in Brazil. The objective of this study was to conduct a phylogenetic analysis on Babesia isolates from dogs in Goiânia, Goiás. Blood samples were obtained from 890 dogs presenting clinical signs suggestive of canine babesiosis that were attended at a veterinary hospital of Goiás. Only samples presenting typical intraerythrocytic parasites were used in the study. These were subjected to DNA extraction and amplification of a fragment of the 18S rRNA, by means of PCR. The PCR products were purified and sequenced. Sequences were obtained from 35 samples but only 17 of these were kept after quality assessment. Similarity analysis using BLASTn demonstrated that all 17 sequences corresponded to B. canis vogeli. Analysis using the Mega4 software showed that the isolates of B. canis vogeli from dogs in Goiânia present a high degree of molecular similarity (99.2 to 100%) in comparison with other reference isolates from other regions of Brazil and worldwide, deposited in GenBank.
Assuntos
Babesia/classificação , Babesia/genética , Animais , Brasil , Cães , FilogeniaRESUMO
Iron, copper, and zinc are essential for all living organisms. Moreover, the homeostasis of these metals is vital to microorganisms during pathogenic interactions with a host. Most pathogens have developed specific mechanisms for the uptake of micronutrients from their hosts in order to counteract the low availability of essential ions in infected tissues. We report here an analysis of genes potentially involved in iron, copper, and zinc uptake and homeostasis in the fungal pathogens Paracoccidioides brasiliensis, Cryptococcus neoformans var. grubii, and Cryptococcus gattii. Although prior studies have identified certain aspects of metal regulation in Cryptococcus species, little is known regarding the regulation of these elements in P. brasiliensis. We also present amino acid sequences analyses of deduced proteins in order to examine possible conserved domains. The genomic data reveals, for the first time, genes associated to iron, copper, and zinc assimilation and homeostasis in P. brasiliensis. Furthermore, analyses of the three fungal species identified homologs to genes associated with high-affinity uptake systems, vacuolar and mitochondrial iron storage, copper uptake and reduction, and zinc assimilation. However, homologs to genes involved in siderophore production were only found in P. brasiliensis. Interestingly, in silico analysis of the genomes of P. brasiliensisPb01, Pb03, and Pb18 revealed significant differences in the presence and/or number of genes involved in metal homeostasis, such as in genes related to iron reduction and oxidation. The broad analyses of the genomes of P. brasiliensis, C. neoformans var. grubii, and C. gattii for genes involved in metal homeostasis provide important groundwork for numerous interesting future areas of investigation that are required in order to validate and explore the function of the identified genes and gene pathways.
RESUMO
Ehrlichia canis é um parasito bacteriano intracelular obrigatório, agente da Erliquiose Monocítica Canina. O método de diagnóstico laboratorial de rotina é realizado pela demonstração microscópica direta das inclusões intraleucocitárias. Mais recentemente a reação em cadeia da polimerase (PCR)foi introduzida como um método para aumentar a sensibilidade e a especificidade do diagnóstico. O objetivo deste trabalho foi pesquisar a presença de Ehrlichia em cães na cidade de Goiânia, Goiás, por métodos de diagnóstico molecular. Para o estudo, foram obtidas 40 amostras de sanguede cães sintomáticos atendidos no Hospital Veterinário da Universidade Federal de Goiás. Todas as amostras, após a extração de DNA, foram testadas pela PCR empregando-se oligonucleotídeos gênero-específicos e, posteriormente, espécie-específicos para o gene 16S rRNA. Em seguida, foirealizada a purificação do produto de PCR espécie-específico para a realização de sequenciamento. Destas, 17 mostraram-se PCR positivas tanto nas reações para gênero quanto para a espécie E. canis. Os produtos de PCR foram sequenciados e as sequências com melhor qualidade (n igual a 5)foram escolhidas para estudos subsequentes. A análise de similaridade pelo BLASTn demonstroucorrespondência com a espécie Ehrlichia canis. Graças à utilização do programa Mega4 foi possível verificar que as amostras de E. canis provenientes de cães da cidade de Goiânia apresentam elevado grau de similaridade molecular com os isolados de referência para a mesma subespécie de outras regiões do Brasil e do mundo. Amostras de E. canis de cães avaliados neste estudo formam grupo filogenético bem definido, juntamente com amostras de referência de E. canis de diferentes regiõesgeográficas. As sequências obtidas foram depositadas no GenBank como sequências parciais do gene 16S rRNA de E. canis, procedentes de Goiânia.
Assuntos
Animais , Cães , Ehrlichia canis/classificação , Ehrlichiose , Epidemiologia Molecular , Filogenia , Pancitopenia , Reação em Cadeia da Polimerase , BrasilRESUMO
The ascomycete Paracoccidioides brasiliensis is a human pathogen with a broad distribution in Latin America. The infection process of P. brasiliensis is initiated by aerially dispersed mycelia propagules, which differentiate into the yeast parasitic phase in human lungs. Therefore, the transition to yeast is an initial and fundamental step in the infective process. In order to identify and characterize genes involved in P. brasiliensis transition to yeast, which could be potentially associated to early fungal adaptation to the host, expressed sequence tags (ESTs) were examined from a cDNA library, prepared from mycelia ongoing differentiation to yeast cells. In this study, it is presented a screen for a set of genes related to protein synthesis and to protein folding/modification/destination expressed during morphogenesis from mycelium to yeast. Our analysis revealed 43 genes that are induced during the early transition process, when compared to mycelia. In addition, eight novel genes related to those processes were described in the P. brasiliensis transition cDNA library. The types of induced and novel genes in the transition cDNA library highlight some metabolic aspects, such as putative increase in protein synthesis, in protein glycosylation, and in the control of protein folding that seem to be relevant to the fungal transition to the parasitic phase.
Assuntos
Proteínas Fúngicas/metabolismo , Perfilação da Expressão Gênica , Morfogênese/fisiologia , Micélio/crescimento & desenvolvimento , Paracoccidioides , Leveduras/citologia , Etiquetas de Sequências Expressas , Proteínas Fúngicas/genética , Regulação Fúngica da Expressão Gênica , Biblioteca Gênica , Humanos , Micélio/genética , Paracoccidioides/citologia , Paracoccidioides/crescimento & desenvolvimento , Paracoccidioides/patogenicidade , Biossíntese de Proteínas , Dobramento de Proteína , Transcrição Gênica , Leveduras/genética , Leveduras/metabolismoRESUMO
Nonstructural protein 4 (NSP4), encoded by group A rotavirus genome segment 10, is a multifunctional protein and the first recognized virus-encoded enterotoxin. The NSP4 gene has been sequenced, and five distinct genetic groups have been described: genotypes A-E. NSP4 genotypes A, B, and C have been detected in humans. In this study, the NSP4-encoding gene of human rotavirus strains of different G and P genotypes collected from children between 1987 and 2003 in three cities of West Central region of Brazil was characterized. NSP4 gene of 153 rotavirus-positive fecal samples was amplified by reverse transcriptase-polymerase chain reaction and then sequenced. For phylogenetic analysis, NSP4 nucleotide sequences of these samples were compared to nucleotide sequences of reference strains available in GenBank. Two distinct NSP4 genotypes could be identified: 141 (92.2%) sequences clustered with NSP4 genotype B, and 12 sequences (7.8%) clustered with NSP4 genotype A. These results reinforce that further investigations are needed to assess the validity of NSP4 as a suitable target for epidemiologic surveillance of rotavirus infections and vaccine development.