Geometric mixing.

Mixing fluids often involves a periodic action, like stirring one's tea. But reciprocating motions in fluids at low Reynolds number, in Stokes flows where inertia is negligible, lead to periodic cycles of mixing and unmixing, because the physics, molecular diffusion excepted, is time reversible. So how can fluid be mixed in such circumstances? The answer involves a geometric phase. Geometric phases are found everywhere in physics as anholonomies, where after a closed circuit in the parameters, some system variables do not return to their original values. We discuss the geometric phase in fluid mixing: geometric mixing. This article is part of the theme issue 'Stokes at 200 (part 2)'.

Excitonic Emission of Monolayer Semiconductors Near-Field Coupled to High-Q Microresonators.

We present quantum yield measurements of single layer WSe2 (1L-WSe2) integrated with high-Q ( Q > 106) optical microdisk cavities, using an efficient (η > 90%) near-field coupling scheme based on a tapered optical fiber. Coupling of the excitonic emission is achieved by placing 1L-WSe2 in the evanescent cavity field. This preserves the microresonator high intrinsic quality factor ( Q > 106) below the bandgap of 1L-WSe2. The cavity quantum yield is QYc ≈ 10-3, consistent with operation in the broad emitter regime (i.e., the emission lifetime of 1L-WSe2 is significantly shorter than the bare cavity decay time). This scheme can serve as a precise measurement tool for the excitonic emission of layered materials into cavity modes, for both in plane and out of plane excitation.

Heralded single-phonon preparation, storage, and readout in cavity optomechanics.

We show how to use the radiation pressure optomechanical coupling between a mechanical oscillator and an optical cavity field to generate in a heralded way a single quantum of mechanical motion (a Fock state). Starting with the oscillator close to its ground state, a laser pumping the upper motional sideband produces correlated photon-phonon pairs via optomechanical parametric down-conversion. Subsequent detection of a single scattered Stokes photon projects the macroscopic oscillator into a single-phonon Fock state. The nonclassical nature of this mechanical state can be demonstrated by applying a readout laser on the lower sideband to map the phononic state to a photonic mode and performing an autocorrelation measurement. Our approach proves the relevance of cavity optomechanics as an enabling quantum technology.

Fluid dynamics of establishing left-right patterning in development.

How does the clockwise motion of tens of monocilia drive a leftward flow in the node? And, as the observed flow is leftward, how is the fluid recirculating within the node, as it must, because the node is a closed structure? How does the nodal flow lead to left-right symmetry breaking in the embryo? These questions are within the realm of fluid physics, whose application to the problem of left-right symmetry breaking in vertebrates has led to important advances in the field.

Embryonic nodal flow and the dynamics of nodal vesicular parcels.

We address with fluid-dynamical simulations using direct numerical techniques three important and fundamental questions with respect to fluid flow within the mouse node and left-right development. First, we consider the differences between what is experimentally observed when assessing cilium-induced fluid flow in the mouse node in vitro and what is to be expected in vivo. The distinction is that in vivo, the leftward fluid flow across the mouse node takes place within a closed system and is consequently confined, while this is no longer the case on removing the covering membrane and immersing the embryo in a fluid-filled volume to perform in vitro experiments. Although there is a central leftward flow in both instances, we elucidate some important distinctions about the closed in vivo situation. Second, we model the movement of the newly discovered nodal vesicular parcels (NVPs) across the node and demonstrate that the flow should indeed cause them to accumulate on the left side of the node, as required for symmetry breaking. Third, we discuss the rupture of NVPs. Based on the biophysical properties of these vesicles, we argue that the morphogens they contain are likely not delivered to the surrounding cells by their mechanical rupture either by the cilia or the flow, and rupture must instead be induced by an as yet undiscovered biochemical mechanism.

Molecular cavity optomechanics as a theory of plasmon-enhanced Raman scattering.

The exceptional enhancement of Raman scattering by localized plasmonic resonances in the near field of metallic nanoparticles, surfaces or tips (SERS, TERS) has enabled spectroscopic fingerprinting down to the single molecule level. The conventional explanation attributes the enhancement to the subwavelength confinement of the electromagnetic field near nanoantennas. Here, we introduce a new model that also accounts for the dynamical nature of the plasmon-molecule interaction. We thereby reveal an enhancement mechanism not considered before: dynamical backaction amplification of molecular vibrations. We first map the system onto the canonical Hamiltonian of cavity optomechanics, in which the molecular vibration and the plasmon are parametrically coupled. We express the vacuum optomechanical coupling rate for individual molecules in plasmonic 'hot-spots' in terms of the vibrational mode's Raman activity and find it to be orders of magnitude larger than for microfabricated optomechanical systems. Remarkably, the frequency of commonly studied molecular vibrations can be comparable to or larger than the plasmon's decay rate. Together, these considerations predict that an excitation laser blue-detuned from the plasmon resonance can parametrically amplify the molecular vibration, leading to a nonlinear enhancement of Raman emission that is not predicted by the conventional theory. Our optomechanical approach recovers known results, provides a quantitative framework for the calculation of cross-sections, and enables the design of novel systems that leverage dynamical backaction to achieve additional, mode-selective enhancements. It also provides a quantum mechanical framework to analyse plasmon-vibrational interactions in terms of molecular quantum optomechanics.

Geometric Mixing, Peristalsis, and the Geometric Phase of the Stomach.

Mixing fluid in a container at low Reynolds number--in an inertialess environment--is not a trivial task. Reciprocating motions merely lead to cycles of mixing and unmixing, so continuous rotation, as used in many technological applications, would appear to be necessary. However, there is another solution: movement of the walls in a cyclical fashion to introduce a geometric phase. We show using journal-bearing flow as a model that such geometric mixing is a general tool for using deformable boundaries that return to the same position to mix fluid at low Reynolds number. We then simulate a biological example: we show that mixing in the stomach functions because of the "belly phase," peristaltic movement of the walls in a cyclical fashion introduces a geometric phase that avoids unmixing.

Tunable narrowband entangled photon pair source for resonant single-photon single-atom interaction.

We present a tunable, frequency-stabilized, narrow-bandwidth source of frequency-degenerate, entangled photon pairs. The source is based on spontaneous parametric downconversion in periodically poled KTiOPO(4). Its wavelength can be stabilized to 850 or 854 nm, thus allowing to address two transitions in (40)Ca(+) ions. Its output bandwidth of 22 MHz coincides with the absorption bandwidth of the calcium ions. Its spectral power density is 1.0 generated pairs/(s MHz mW).

Fluid dynamics of nodal flow and left-right patterning in development.

The manner in which the nodal flow determines the breaking of left-right symmetry during development is a beautiful example of the application of fluid dynamics to developmental biology. Detailed understanding of this crucial developmental process has greatly advanced by the transfer of ideas between these two disciplines. In this article, we review our and others' work on applying fluid dynamics and dynamical systems to the problem of left-right symmetry breaking in vertebrates.

Fronts between rhythms: spatiotemporal dynamics of extended polyrhythmic media.

We study the propagation of fronts in extended oscillatory reaction-diffusion systems that contain several coexisting limit cycles. In contrast with the variational behavior, fronts between regions oscillating in two different limit cycles are found to propagate not necessarily towards the region of the less stable limit cycle, but towards the regions of the largest amplitudes, provided that the frequency mismatch between the cycles is sufficiently large. In other words, the smaller oscillations can always be made to control the whole system.