Detalhe da pesquisa
1.
Concurrent prediction of RNA secondary structures with pseudoknots and local 3D motifs in an integer programming framework.
Bioinformatics
; 40(2)2024 02 01.
Artigo
Inglês
| MEDLINE | ID: mdl-38230755
2.
Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics.
PLoS Comput Biol
; 19(8): e1011309, 2023 08.
Artigo
Inglês
| MEDLINE | ID: mdl-37535676
3.
AlphaFold2 Can Predict Single-Mutation Effects.
Phys Rev Lett
; 131(21): 218401, 2023 Nov 24.
Artigo
Inglês
| MEDLINE | ID: mdl-38072605
4.
αßDCA method identifies unspecific binding but specific disruption of the group I intron by the StpA chaperone.
RNA
; 26(11): 1530-1540, 2020 11.
Artigo
Inglês
| MEDLINE | ID: mdl-32747608
5.
Understanding Hepatitis B Virus Dynamics and the Antiviral Effect of Interferon Alpha Treatment in Humanized Chimeric Mice.
J Virol
; 95(14): e0049220, 2021 06 24.
Artigo
Inglês
| MEDLINE | ID: mdl-33910953
6.
Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs.
PLoS Comput Biol
; 17(5): e1008990, 2021 05.
Artigo
Inglês
| MEDLINE | ID: mdl-34048427
7.
On the predictibility of A-minor motifs from their local contexts.
RNA Biol
; 19(1): 1208-1227, 2022 01.
Artigo
Inglês
| MEDLINE | ID: mdl-36384383
8.
Augmented base pairing networks encode RNA-small molecule binding preferences.
Nucleic Acids Res
; 48(14): 7690-7699, 2020 08 20.
Artigo
Inglês
| MEDLINE | ID: mdl-32652015
9.
On the emergence of structural complexity in RNA replicators.
RNA
; 25(12): 1579-1591, 2019 12.
Artigo
Inglês
| MEDLINE | ID: mdl-31467146
10.
incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAs.
Bioinformatics
; 36(9): 2920-2922, 2020 05 01.
Artigo
Inglês
| MEDLINE | ID: mdl-31971575
11.
Automated, customizable and efficient identification of 3D base pair modules with BayesPairing.
Nucleic Acids Res
; 47(7): 3321-3332, 2019 04 23.
Artigo
Inglês
| MEDLINE | ID: mdl-30828711
12.
Design of RNAs: comparing programs for inverse RNA folding.
Brief Bioinform
; 19(2): 350-358, 2018 03 01.
Artigo
Inglês
| MEDLINE | ID: mdl-28049135
13.
Mining for recurrent long-range interactions in RNA structures reveals embedded hierarchies in network families.
Nucleic Acids Res
; 46(8): 3841-3851, 2018 05 04.
Artigo
Inglês
| MEDLINE | ID: mdl-29608773
14.
A Parameter Estimation Method for Multiscale Models of Hepatitis C Virus Dynamics.
Bull Math Biol
; 81(10): 3675-3721, 2019 10.
Artigo
Inglês
| MEDLINE | ID: mdl-31338739
15.
RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data.
Nucleic Acids Res
; 45(W1): W440-W444, 2017 07 03.
Artigo
Inglês
| MEDLINE | ID: mdl-28525607
16.
Combining structure probing data on RNA mutants with evolutionary information reveals RNA-binding interfaces.
Nucleic Acids Res
; 44(11): e104, 2016 06 20.
Artigo
Inglês
| MEDLINE | ID: mdl-27095200
17.
incaRNAfbinv: a web server for the fragment-based design of RNA sequences.
Nucleic Acids Res
; 44(W1): W308-14, 2016 07 08.
Artigo
Inglês
| MEDLINE | ID: mdl-27185893
18.
Reconstruction of ancestral RNA sequences under multiple structural constraints.
BMC Genomics
; 17(Suppl 10): 862, 2016 11 11.
Artigo
Inglês
| MEDLINE | ID: mdl-28185557
19.
A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution.
Bioinformatics
; 29(13): i308-15, 2013 Jul 01.
Artigo
Inglês
| MEDLINE | ID: mdl-23812999
20.
Corrigendum: RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data.
Nucleic Acids Res
; 45(W1): W573, 2017 07 03.
Artigo
Inglês
| MEDLINE | ID: mdl-28666332