Learning spatio-temporal patterns with Neural Cellular Automata.

Neural Cellular Automata (NCA) are a powerful combination of machine learning and mechanistic modelling. We train NCA to learn complex dynamics from time series of images and Partial Differential Equation (PDE) trajectories. Our method is designed to identify underlying local rules that govern large scale dynamic emergent behaviours. Previous work on NCA focuses on learning rules that give stationary emergent structures. We extend NCA to capture both transient and stable structures within the same system, as well as learning rules that capture the dynamics of Turing pattern formation in nonlinear PDEs. We demonstrate that NCA can generalise very well beyond their PDE training data, we show how to constrain NCA to respect given symmetries, and we explore the effects of associated hyperparameters on model performance and stability. Being able to learn arbitrary dynamics gives NCA great potential as a data driven modelling framework, especially for modelling biological pattern formation.

Using equiluminance settings to estimate the cardinal chromatic directions for individuals.

Color information is processed by the retina and lateral geniculate along principal dimensions known as the cardinal directions of color space. Normal differences in spectral sensitivity can impact the stimulus directions that isolate these axes for individual observers and can arise from variation in lens and macular pigment density, photopigment opsins, photoreceptor optical density, and relative cone numbers. Some of these factors that influence the chromatic cardinal axes also impact luminance sensitivity. We modeled and empirically tested how well tilts on the individual's equiluminant plane are correlated with rotations in the directions of their cardinal chromatic axes. Our results show that, especially for the SvsLM axis, the chromatic axes can be partially predicted by luminance settings, providing a potential procedure for efficiently characterizing the cardinal chromatic axes for observers.

Predicting color matches from luminance matches.

Color vision and spectral sensitivity vary among individuals with normal color vision; thus, for many applications, it is important to measure and correct for an observer's sensitivity. Full correction would require measuring color and luminance matches and is rarely implemented. However, luminance matches (equiluminance settings) are routinely measured and simple to conduct. We modeled how well an observer's color matches could be approximated by measuring only luminance sensitivity, since both depend on a common set of factors. We show that lens and macular pigment density and $L/M$L/M cone ratios alter equiluminance settings in different ways and can therefore be estimated from the settings. In turn, the density variations can account for a large proportion of the normal variation in color matching. Thus, luminance matches may provide a simple method to at least partially predict an observer's color matches without requiring more complex tasks or equipment.

Effect of Nozzle Orientation on Dispersion of Aqualuer 20-20 Sprayed by a Truck-Mounted Ultra-Low Volume Sprayer Against Caged Aedes aegypti.

Inconsistencies in efficacy of ultra-low volume (ULV) ground applications in the literature are linked to the lack of adjustments in sprayer parameters. To investigate the effect of nozzle orientation of a truck-mounted ULV sprayer on application efficacy, a study was conducted at St. Johns County Fairground, Elkton, FL, during the summer of 2014. The efficacy was assessed by mortality of caged adult Aedes aegypti, spray deposition, and droplet size spectrum up to 122 m from the spray line. Aqualuer 20-20 (20.6% permethrin active ingredient [AI] and 20% piperonyl butoxide [PBO]) was applied at the maximum label rate with the nozzle pointed 45° upward, horizontal (0°), or 30° downward. Mortality was recorded after 24 h, deposition was determined with fluorometry, and droplets were measured with DropVision. Overall, horizontal nozzle angle spraying Aqualuer 20-20 achieved the highest efficacy followed by a 30° downward angle, while a 45° angle showed the least efficacy in open field tests. The mortality data showed complete mortality from a 0° nozzle up to 122 m from the spray line except for 1 location at 122 m in 1 replication. The mortality from a 30° downward orientation was lower beyond 30 m from the spray line, while the mortality from a 45° upward orientation was low close to the spray line and beyond 30 m. Horizontal orientation had higher deposition than other orientations, but the differences were not significant. There was also no significant difference in droplet spectrum from all orientations.

An evaluation of image enhancements in three-dimensional computed tomography baggage screening.

New computed tomography and image enhancement technologies are increasingly used in cabin baggage screening at airports. The current work sought to establish whether these technological advancements had pushed beyond human psychological capability by examining the impact of different image enhancements on threat detection. Sixty-one naïve adults participated in an online study and received targetless search training before being tested in a simulated baggage screening task - in addition to three-dimensional images this task incorporated two-dimensional slice views, material stripping and zoom functionality. The two-dimensional slice view improved threat detection sensitivity and lowered response criterion relative to a standard three-dimensional image, as screeners found dangerous items they had initially missed, likely due to improved ability to resolve superposition or identify edges. In contrast, material stripping and zoom did not impact sensitivity, criterion or screeners' confidence in their responses, suggesting that they contributed no additional informational value.

PCSK6 is associated with handedness in individuals with dyslexia.

Approximately 90% of humans are right-handed. Handedness is a heritable trait, yet the genetic basis is not well understood. Here we report a genome-wide association study for a quantitative measure of relative hand skill in individuals with dyslexia [reading disability (RD)]. The most highly associated marker, rs11855415 (P = 4.7 × 10(-7)), is located within PCSK6. Two independent cohorts with RD show the same trend, with the minor allele conferring greater relative right-hand skill. Meta-analysis of all three RD samples is genome-wide significant (n = 744, P = 2.0 × 10(-8)). Conversely, in the general population (n = 2666), we observe a trend towards reduced laterality of hand skill for the minor allele (P = 0.0020). These results provide molecular evidence that cerebral asymmetry and dyslexia are linked. Furthermore, PCSK6 is a protease that cleaves the left-right axis determining protein NODAL. Functional studies of PCSK6 promise insights into mechanisms underlying cerebral lateralization and dyslexia.

Independent genome-wide scans identify a chromosome 18 quantitative-trait locus influencing dyslexia.

Developmental dyslexia is defined as a specific and significant impairment in reading ability that cannot be explained by deficits in intelligence, learning opportunity, motivation or sensory acuity. It is one of the most frequently diagnosed disorders in childhood, representing a major educational and social problem. It is well established that dyslexia is a significantly heritable trait with a neurobiological basis. The etiological mechanisms remain elusive, however, despite being the focus of intensive multidisciplinary research. All attempts to map quantitative-trait loci (QTLs) influencing dyslexia susceptibility have targeted specific chromosomal regions, so that inferences regarding genetic etiology have been made on the basis of very limited information. Here we present the first two complete QTL-based genome-wide scans for this trait, in large samples of families from the United Kingdom and United States. Using single-point analysis, linkage to marker D18S53 was independently identified as being one of the most significant results of the genome in each scan (P< or =0.0004 for single word-reading ability in each family sample). Multipoint analysis gave increased evidence of 18p11.2 linkage for single-word reading, yielding top empirical P values of 0.00001 (UK) and 0.0004 (US). Measures related to phonological and orthographic processing also showed linkage at this locus. We replicated linkage to 18p11.2 in a third independent sample of families (from the UK), in which the strongest evidence came from a phoneme-awareness measure (most significant P value=0.00004). A combined analysis of all UK families confirmed that this newly discovered 18p QTL is probably a general risk factor for dyslexia, influencing several reading-related processes. This is the first report of QTL-based genome-wide scanning for a human cognitive trait.

A flexible RecC surface loop required for Chi hotspot control of RecBCD enzyme.

Escherichia coli RecBCD helicase-nuclease promotes vital homologous recombination-based repair of DNA double-strand breaks. The RecB nuclease domain (Nuc) is connected to the RecB helicase domain by a 19-amino-acid tether. When DNA binds to RecBCD, published evidence suggests that Nuc moves ∼50 Šfrom the exit of a RecC tunnel, from which the 3'-ended strand emerges during unwinding, to a distant position on RecC's surface. During subsequent ATP-dependent unwinding of DNA, Nuc nicks the 3'-ended strand near 5'-GCTGGTGG-3' (Chi recombination hotspot). Here, we test our model of Nuc swinging on the tether from the RecC tunnel exit to the RecC distant surface and back to the RecC tunnel exit to cut at Chi. We identify positions in a flexible surface loop on RecC and on RecB Nuc with complementary charges, mutation of which strongly reduces but does not eliminate Chi hotspot activity in cells. The recC loop mutation interacts with recB mutations hypothesized to be in the Chi-activated intramolecular signal transduction pathway; the double mutants, but not the single mutants, eliminate Chi hotspot activity. A RecC amino acid near the flexible loop is also essential for full Chi activity; its alteration likewise synergizes with a signal transduction mutation to eliminate Chi activity. We infer that altering the RecC surface loop reduces coordination among the subunits, which is critical for Chi hotspot activity. We discuss other RecBCD mutants with related properties.

Primary infection with Zika virus provides one-way heterologous protection against Spondweni virus infection in rhesus macaques.

Spondweni virus (SPONV) is the closest known relative of Zika virus (ZIKV). SPONV pathogenesis resembles that of ZIKV in pregnant mice, and both viruses are transmitted by Aedes aegypti mosquitoes. We aimed to develop a translational model to further understand SPONV transmission and pathogenesis. We found that cynomolgus macaques (Macaca fascicularis) inoculated with ZIKV or SPONV were susceptible to ZIKV but resistant to SPONV infection. In contrast, rhesus macaques (Macaca mulatta) supported productive infection with both ZIKV and SPONV and developed robust neutralizing antibody responses. Crossover serial challenge in rhesus macaques revealed that SPONV immunity did not protect against ZIKV infection, whereas ZIKV immunity was fully protective against SPONV infection. These findings establish a viable model for future investigation into SPONV pathogenesis and suggest that the risk of SPONV emergence is low in areas with high ZIKV seroprevalence due to one-way cross-protection between ZIKV and SPONV.

Enhanced threat detection in three dimensions: An image-matched comparison of computed tomography and dual-view X-ray baggage screening.

Computed Tomography (CT) is increasingly used in screening of cabin baggage in airports. The current study aimed to establish whether screening with CT confers a detection advantage over dual-view (DV) X-ray when resolution is controlled. We also evaluated whether a 'targetless' search strategy - in which screeners identify and reject safe items - improved detection relative to target-based methods. In an online study, 104 novice screeners were trained with either CT or DV, and either a targetless or a target-based search strategy. Screeners were then tested in a simulated cabin baggage screening task. CT screeners performed with greater sensitivity than DV screeners. Search strategy did not affect sensitivity, although the target-based strategy resulted in a more liberal criterion. We conclude that CT imaging confers a benefit to screening performance over DV when image resolution is controlled. This is likely due to the ability to rotate the image to resolve occlusions.

Attenuating the 'attentional white bear' effect enhances suppressive attention.

Trying to ignore an object can bias attention towards it - a phenomenon referred to as the 'attentional white bear' (AWB) effect. The mechanisms behind this effect remain unclear. On one hand, the AWB may reflect reactive, 'search and destroy' distractor suppression, which directs attention toward irrelevant objects in order to suppress further attention to them. However, another possibility is that the AWB results from failed proactive distractor suppression - attempting to suppress attention to an irrelevant object from the outset may inadvertently result in an attentional shift towards it. To distinguish these two possibilities, we developed a categorical visual search task that addresses limitations present in prior studies. In five experiments (Ntotal = 96), participants searched displays of naturalistic stimuli cued only with distractor categories (targets were unknown and unpredictable). We observed an AWB and later attenuated it by presenting a pre-search stimulus, likely disrupting guidance from distractor templates in working memory. We conclude that the AWB resulted from a failure of proactive suppression rather than a search and destroy process.

Investigation of dyslexia and SLI risk variants in reading- and language-impaired subjects.

Dyslexia (or reading disability) and specific language impairment (or SLI) are common childhood disorders that show considerable co-morbidity and diagnostic overlaps and have been suggested to share some genetic aetiology. Recently, genetic risk variants have been identified for SLI and dyslexia enabling the direct evaluation of possible shared genetic influences between these disorders. In this study we investigate the role of variants in these genes (namely MRPL19/C20RF3, ROBO1, DCDC2, KIAA0319, DYX1C1, CNTNAP2, ATP2C2 and CMIP) in the aetiology of SLI and dyslexia. We perform case-control and quantitative association analyses using measures of oral and written language skills in samples of SLI and dyslexic families and cases. We replicate association between KIAA0319 and DCDC2 and dyslexia and provide evidence to support a role for KIAA0319 in oral language ability. In addition, we find association between reading-related measures and variants in CNTNAP2 and CMIP in the SLI families.

Attention neglects a stare-in-the-crowd: Unanticipated consequences of prediction-error coding.

Direct gaze - someone looking at you - is an important and subjectively-salient stimulus. Its processing is thought to be enhanced by the brain's internalised predictions - priors - that effectively specify it as the most likely gaze direction. Current consensus holds that, befitting its presumed importance, direct gaze attracts attention more powerfully than other gazes. Conversely, some Predictive Coding (PC) models, in which exogenous attention is drawn to stimuli that violate predictions, may be construed as making the opposite claim - i.e., exogenous attention should be biased away from direct gaze (which conforms to internal predictions), toward averted gaze (which does not). Here, searching displays with salient, 'odd-one-out' gazes, we observed attentional bias (in rapid, initial saccades) toward averted gaze, as would be expected by PC models. However, this pattern obtained only when conditions highlighted gaze-uniqueness. We speculate that, in our experiments, task requirements determined how prediction influenced perception.

Improved X-ray baggage screening sensitivity with 'targetless' search training.

When searching for a known target, mental representations of target features, or templates, guide attention towards matching objects and facilitate recognition. When only distractor features are known, distractor templates allow irrelevant objects to be recognised and attention to be shifted away. This is particularly true in X-ray baggage search, a challenging real-world visual search task with implications for public safety, where targets may be unknown, difficult to predict and concealed by an adversary, but distractors are typically benign and easier to identify. In the present study, we draw on basic principles of distractor suppression and rejection to investigate a counterintuitive 'targetless' approach to training baggage search. In a simulated X-ray baggage search task, we observed significant benefits to target detection sensitivity (d') for targetless relative to target-based training, but no effects of performance-contingent rewards or the inclusion of superordinate semantic categories during training. The benefits of targetless search training were most apparent for stimuli involving less spatial overlap (occlusion), which likely represents the difficulty and greater individual variation involved in searching more visually complex images. Together, these results demonstrate the effectiveness of a counterintuitive targetless approach to training target detection in X-ray baggage search, based on basic principles of distractor suppression and rejection, with potential for use as a real-world training tool.

Origin and Lineage Plasticity of Endogenous Lacrimal Gland Epithelial Stem/Progenitor Cells.

The lacrimal gland (LG) is an exocrine organ responsible for the secretion of aqueous tear film. Regenerative and stem cell therapies that target LG repair are coming to the fore, although our understanding of LG cell lineage hierarchy is still incomplete. We utilize the analysis of label-retaining cells (LRCs) and genetic lineage tracing to define LG cell lineage hierarchy. Our study suggests that embryonic LG contains unique long-lived multipotent stem cells that give rise to all postnatal epithelial cell types. Following birth, lineages become established and the fate of progenitor cell descendants becomes restricted. However, some cell lineages retain plasticity after maturation and can trans-differentiate into other cell types upon injury. The demonstration that the LG contains progenitor cells with different levels of plasticity has profound implications for our understanding of LG gland function in homeostasis and disease and will be helpful for developing stem cell-based therapies in the future.

Using Eye Movements to Understand how Security Screeners Search for Threats in X-Ray Baggage.

There has been an increasing drive to understand failures in searches for weapons and explosives in X-ray baggage screening. Tracking eye movements during the search has produced new insights into the guidance of attention during the search, and the identification of targets once they are fixated. Here, we review the eye-movement literature that has emerged on this front over the last fifteen years, including a discussion of the problems that real-world searchers face when trying to detect targets that could do serious harm to people and infrastructure.

Effect of Travel Speed on Dispersion of Aqualuer 20-20 Sprayed by a Truck-Mounted Ultra-Low-Volume Sprayer Against Caged Aedes aegypti1.

The effect of travel speed of a truck-mounted ultra-low-volume (ULV) sprayer on its application efficacy was studied at St. Johns County Fairground, Elkton, FL, during summer 2015. The efficacy was assessed by spray deposition, droplet size spectrum, and 24-h mortality of caged adult Aedes aegypti, using 2 rows of sampling locations, 15 m apart and spread up to 122 m from the spray. Each location had a bioassay cage and an impinger droplet sampler, 1 m apart from each other, at 1.5 m off the ground. Aqualuer® 20-20 (20.6% permethrin AI and 20% piperonyl butoxide) was applied at the maximum label rate, travelling at 8, 16, and 32 km/h. Three replications were completed on 3 days at least a week apart, with 1 replication of each travel speed per day. On each application day the travel speeds were rotated. Overall, a travel speed of 32 km/h achieved the highest efficacy of Aqualuer® 20-20, followed by 16 km/h, and then 8 km/h, in an open field. In general, droplet size, deposition, and mosquito mortality increased with increasing travel speed. The increased travel speed will also enhance the work rate of a sprayer and operator, thus reducing the cost of ULV applications.