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1.
Molecules ; 28(3)2023 Jan 26.
Artigo em Inglês | MEDLINE | ID: mdl-36770880

RESUMO

In this study, the density functional theory is used to study the ability of (ZnS)n clusters to remove Hg0, HgCl, and HgCl2 and reveals that they can be absorbed on (ZnS)n clusters. According to electron localization function (ELF) and non-covalent interactions (NCI) analyses, the adsorption of Hg0 on (ZnS)n is physical adsorption and the adsorption ability of (ZnS)n for removing Hg0 is weak. When (ZnS)n adsorbs HgCl and HgCl2, two new Hg-S and Zn-Cl bonds form in the resultant clusters. An ELF analysis identifies the formation of Hg-S and Zn-Cl bonds in (ZnS)nHgCl and (ZnS)nHgCl2. A partial density of states and charge analysis confirm that as Hg0, HgCl, and HgCl2 approach (ZnS)n clusters, atomic orbitals in Hg and Zn, Hg and S, as well as Zn and Cl overlap and hybridize. Adsorption energies of HgCl and HgCl2 on (ZnS)n clusters are obviously bigger than those of Hg0, indicating that HgCl and HgCl2 adsorption on (ZnS)n clusters is much stronger than that of Hg0. By combining ELF analysis, NCI analysis, and adsorption energies, the adsorption of HgCl, and HgCl2 on (ZnS)n clusters can be classified as chemical adsorption. The adsorption ability of (ZnS)n clusters for removing HgCl and HgCl2 is higher than that of Hg0.

2.
J Mol Model ; 29(4): 105, 2023 Mar 22.
Artigo em Inglês | MEDLINE | ID: mdl-36949350

RESUMO

CONTEXT: The structures of Ag2n-1Sn- (n = 2-11) clusters are obtained by the combination of genetic algorithm (GA) and density functional theory (DFT). All the global minimum structures prefer hollow polyhedral structures, in which S-Ag-S element, triangular Ag3S3 and tetragonal Ag4S4 units present to stabilize the structures. The S atoms in the structures appear in µ3-S or µ4-S form. Adiabatic and vertical electron affinities of the clusters have been obtained, which reveals that they increases as cluster size. Stability analysis shows that Ag9S5- and Ag19S10- have special stability. The HOMO, LUMO orbitals of the clusters are obtained and the orbital components of them are calculated. The HOMO orbitals are mainly from the p orbitals of S atoms, whereas the s, p and d orbitals of Ag atoms contribute much bigger than the p orbitals of S atoms for LUMO orbitals. The orbital delocalization indexes (ODI) of the HOMOs and LUMOs are calculated, and the small ODIs of the HOMOs and LUMOs for n = 4-10 reveal that these orbitals are highly delocalized. By studying the projected density of states and molecular orbitals of Ag9S5- and Ag19S10- clusters, it is found that their molecular orbitals have superatomic properties. Superatomic properties play an important role in stabilizing clusters. METHODS: This work used combined genetic algorithm and density functional theory (GA-DFT), and PBE0/Lanl2tz(Ag)/6-311G(d,p)(S) method to optimize the structures. Gaussian 16 program, Gauss view 6.0.16 program and Multiwfn 3.8 code are the softwares used.

3.
Appl Microbiol Biotechnol ; 96(1): 123-32, 2012 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-22237672

RESUMO

Superoxide dismutase (SOD) has been widely applied in medical treatments, cosmetic, food, agriculture, and chemical industries. In industry, the immobilization of enzymes can offer better stability, feasible continuous operations, easy separation and reusing, and significant decrease of the operation costs. However, little attention has focused on the immobilization of the SOD, as well as the immobilization of thermostable enzymes. In this study, the recombinant thermostable manganese superoxide dismutase (Mn-SOD) of Thermus thermophilus wl was purified and covalently immobilized onto supermagnetic 3-APTES-modified Fe(3)O(4)@SiO(2) nanoparticles using glutaraldehyde method to prepare the Mn-SOD bound magnetic nanoparticles. The Mn-SOD nanoparticles were characterized by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, X-ray diffraction, transmission electron microscopy, and vibrating sample magnetometer analysis. The results indicated that the diameter of Mn-SOD nanoparticles was 40 (± 5) nm, and its saturation magnetization value was 27.9 emu/g without remanence or coercivity. By comparison with the free Mn-SOD, it was found that the immobilized Mn-SOD on nanoparticles exhibited better resistance to temperature, pH, metal ions, enzyme inhibitors, and detergents. The results showed that the immobilized Mn-SOD on nanoparticles could be reused ten times without significant decrease of enzymatic activity. Therefore, our study presented a novel strategy for the immobilization of thermostable Mn-SOD and for the application of thermostable enzymes.


Assuntos
Enzimas Imobilizadas/metabolismo , Magnetismo , Nanopartículas , Superóxido Dismutase/metabolismo , Thermus thermophilus/enzimologia , Eletroforese em Gel de Poliacrilamida , Estabilidade Enzimática , Enzimas Imobilizadas/química , Concentração de Íons de Hidrogênio , Microscopia Eletrônica de Transmissão , Superóxido Dismutase/química , Superóxido Dismutase/isolamento & purificação , Temperatura , Difração de Raios X
4.
Acta Crystallogr Sect E Struct Rep Online ; 67(Pt 7): o1740, 2011 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-21837128

RESUMO

The title compound, C(19)H(21)N(3)O(4), crystallizes with two independent mol-ecules in the asymmetric unit. In both mol-ecules, there is an intra-molecular O-H⋯N hydrogen bond, which correlates with the fact that each mol-ecule adopts an E configuration with respect to the C=N bond. In the crystal, there are C-H⋯O and C-H⋯π inter-actions present.

5.
J Mol Model ; 25(10): 310, 2019 Sep 10.
Artigo em Inglês | MEDLINE | ID: mdl-31506847

RESUMO

Silver sulfide is a famous semiconductor, which can be used in many areas. Understanding the size evolution of silver sulfide clusters is useful in controlling their size to improve their properties in applications. The structures of (Ag2S)n (n = 1-8) clusters are explored using a combined method of genetic algorithm (GA) and density functional theory (DFT). The TPSSh/def2-tzvp(Ag)/6-311G(d)(S) method has been used to optimize the structures. The re-optimized structures and refined energies are computed at PBE0/Lanl2tz(Ag)/6-311G(d,p)(S) level according to the benchmark calculations. The global minimum (GM) structures, HOMO and LUMO frontier orbitals, density of states, ionization potentials, electron affinity energies, noncovalent interactions, and natural populations of the clusters have been studied. The clusters evolve from open to cage structures when n varies from 1 to 8. A triangular Ag3S3 unit is found to be an important building block, which can construct the global minimum structures of (Ag2S)n (n = 3-8) clusters. When n > 6, quadrangular Ag4S4 rings present in (Ag2S)n clusters. (Ag2S)6 and (Ag2S)8 clusters are in hollow conformation, and both of which have special stability because of their high HOMO-LUMO gaps, high ionization potentials, and Ag⋯Ag attractive interactions in them. Graphical abstract.

6.
Chem Commun (Camb) ; (41): 5215-7, 2008 Nov 07.
Artigo em Inglês | MEDLINE | ID: mdl-18956073

RESUMO

A novel approach to produce hydrogen from bio-oil was obtained with high carbon conversion (>90%) and hydrogen yield (>90%) at T<500 degrees C by using the electrochemical catalytic reforming of oxygenated-organic compounds over 18%NiO/Al(2)O(3) reforming catalyst; thermal electrons play important promoting roles in the decomposition and reforming of the oxygenated-organic compounds in the bio-oil.


Assuntos
Fontes de Energia Bioelétrica , Hidrogênio/química , Compostos Orgânicos/química , Óxido de Alumínio/química , Carbono/química , Catálise , Eletroquímica , Elétrons , Oxigênio/química , Espectrometria de Massas por Ionização por Electrospray
7.
Gene ; 568(1): 1-7, 2015 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-25958347

RESUMO

Thermophiles are attractive microorganisms to study the adaptation of life in high temperature environment. It is revealed that superoxide dismutase (SOD) is essential for thermoadaptation of thermophiles. However, the SOD-mediated pathway of thermoadaptation remains unclear. To address this issue, the proteins interacted with SOD were characterized in Thermus thermophilus in this study. Based on co-immunoprecipitation and Western blot analyses, the results showed that 2-oxoisovalerate dehydrogenase α subunit was bound to SOD. The isothermal titration calorimetry analysis showed the existence of the interaction between SOD and 2-oxoisovalerate dehydrogenase α subunit. The bacterial two-hybrid data indicated that SOD was directly interacted with 2-oxoisovalerate dehydrogenase α subunit. Gene site-directed mutagenesis analysis revealed that the intracellular interaction between SOD and 2-oxoisovalerate dehydrogenase α subunit was dependent on their whole molecules. Therefore our study presented a novel aspect of SOD in the thermoadaptation of thermophiles by interaction with dehydrogenase, a key enzyme of tricarboxylic acid cycle.


Assuntos
2-Oxoisovalerato Desidrogenase (Acilante)/metabolismo , Proteínas de Bactérias/metabolismo , Superóxido Dismutase/metabolismo , Thermus thermophilus/enzimologia , 2-Oxoisovalerato Desidrogenase (Acilante)/química , Adaptação Fisiológica , Sequência de Aminoácidos , Proteínas de Bactérias/química , Dados de Sequência Molecular , Ligação Proteica , Domínios e Motivos de Interação entre Proteínas , Mapeamento de Interação de Proteínas , Superóxido Dismutase/química , Termodinâmica
8.
J Chromatogr A ; 1327: 90-6, 2014 Jan 31.
Artigo em Inglês | MEDLINE | ID: mdl-24411998

RESUMO

A high performance liquid chromatography with fluorescence detection (HPLC-FLD) method for the simultaneous determination of total nitrofuran metabolite residues (furazolidone, furaltadone, nitrofurantoin, and nitrofurazone) in shrimp was developed. The method involves the acid hydrolysis of protein-bound metabolites, followed by the derivatization of the freed metabolites with the new fluorescent derivatization reagent 2-hydroxy-1-naphthaldehyde (HN) and subsequent liquid-liquid extraction (LLE). Separation is achieved on a YMC-Pack Polymer C18 column under alkaline conditions, and the high fluorescence intensity of the derivatives at an emission wavelength Em=463nm (Ex=395nm) enables, for the first time, their simultaneous determination in shrimp at concentrations as low as 1µg/kg by HPLC-FLD. The method was validated using blank shrimp fortified with all four metabolites at 0.5, 1.0 and 2.0µg/kg. Recoveries were >87% with relative standard deviations of <8.1% for all four metabolites. Furthermore, the results obtained by HPLC-FLD were in very good agreement with those obtained by LC-MS/MS analysis.


Assuntos
Nitrofuranos/análise , Penaeidae/química , Animais , Cromatografia Líquida de Alta Pressão/métodos , Cromatografia Líquida/métodos , Fluorometria , Extração Líquido-Líquido , Nitrofuranos/metabolismo , Espectrometria de Massas em Tandem/métodos
9.
Mar Biotechnol (NY) ; 15(6): 659-67, 2013 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-23748908

RESUMO

Lipases have found a number of commercial applications. However, thermostable lipase immobilized on nanoparticle is not extensively characterized. In this study, a recombinant thermostable lipase (designated as TtL) from Thermus thermophilus WL was expressed in Escherichia coli and immobilized onto 3-APTES-modified Fe3O4@SiO2 supermagnetic nanoparticles. Based on analyses with tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis, X-ray diffraction, transmission electron microscopy, and vibrating sample magnetometer observation, the diameter of immobilized lipase nanoparticle was 18.4 (± 2.4) nm, and its saturation magnetization value was 52.3 emu/g. The immobilized lipase could be separated from the reaction medium rapidly and easily in a magnetic field. The biochemical characterizations revealed that, comparing with the free one, the immobilized lipase exhibited better resistance to temperature, pH, metal ions, enzyme inhibitors, and detergents. The K m value for the immobilized TtL (2.56 mg/mL) was found to be lower than that of the free one (3.74 mg/mL), showing that the immobilization improved the affinity of lipase for its substrate. In addition, the immobilized TtL exhibited good reusability. It retained more than 79.5 % of its initial activity after reusing for 10 cycles. Therefore, our study presented that the possibility of the efficient reuse of the thermostable lipase immobilized on supermagnetic nanoparticles made it attractive from the viewpoint of practical application.


Assuntos
Lipase/química , Lipase/isolamento & purificação , Modelos Moleculares , Nanopartículas/metabolismo , Thermus thermophilus/enzimologia , Proteínas de Bactérias , Primers do DNA/genética , Eletroforese em Gel de Poliacrilamida , Enzimas Imobilizadas/química , Enzimas Imobilizadas/isolamento & purificação , Escherichia coli , Lipase/metabolismo , Magnetometria , Microscopia Eletrônica de Transmissão , Tamanho da Partícula , Difração de Raios X
10.
Artigo em Inglês | MEDLINE | ID: mdl-24283965

RESUMO

A simple and sensitive HPLC method with fluorescence detection (HPLC-FLD) is reported for the simultaneous determination of metabolites of four nitrofuran drugs (furazolidone, furaltadone, nitrofurantoin and nitrofurazone) in pork muscle. The method involves acid hydrolysis of the protein-bound drug metabolites and the conjugation of the released side-chains with a novel fluorescence agent 2-hydroxy-1-naphthaldehyde. After liquid-liquid extraction and effective separation of the derivatives on a YMC-Pack Polymer C18 column at 40°C under alkaline conditions, the high fluorescence intensity of these derivatives at emission wavelength λem = 463 nm enables their simultaneous determination in pork muscle at concentrations as low as 1 µg kg⁻¹. The method was validated using blank pork muscle fortified with all four metabolites at 0.5, 1.0 and 2.0 µg kg⁻¹. Recoveries were > 92.3% with RSDs < 8.5% for all four metabolites. The results obtained with HPLC-FLD and LC-MS/MS methods showed very good agreement for pork muscle samples.


Assuntos
Antibacterianos/análise , Carcinógenos/análise , Resíduos de Drogas/análise , Contaminação de Alimentos , Inspeção de Alimentos/métodos , Carne/análise , Nitrofuranos/análise , Métodos Analíticos de Preparação de Amostras , Animais , Antibacterianos/química , Antibacterianos/metabolismo , Biotransformação , Carcinógenos/química , Carcinógenos/metabolismo , China , Cromatografia Líquida de Alta Pressão , Resíduos de Drogas/química , Resíduos de Drogas/metabolismo , Corantes Fluorescentes/química , Limite de Detecção , Carne/economia , Músculo Esquelético/química , Músculo Esquelético/metabolismo , Mutagênicos/análise , Mutagênicos/química , Mutagênicos/metabolismo , Naftalenos/química , Nitrofuranos/química , Nitrofuranos/metabolismo , Reprodutibilidade dos Testes , Espectrometria de Fluorescência , Sus scrofa
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