Quercus rubra invasion of temperate deciduous forest stands alters the structure and functions of the soil microbiome.

Invasive plants can modify the diversity and taxonomical structure of soil microbiomes. However, it is difficult to generalize the underlying factors as their influence often seems to depend on the complex plant-soil-microbial interactions. In this paper, we investigated how Quercus rubra impacts on the soil microbiome across two soil horizons in relation to native woodland. Five paired adjacent invaded vs native vegetation plots in a managed forest in southern Poland were investigated. Soil microbial communities were assessed along with soil enzyme activities and soil physicochemical parameters, separately for both organic and mineral horizons, as well as forest stand characteristics to explore plant-soil-microbe interactions. Although Q. rubra did not significantly affect pH, organic C, total N, available nutrients nor enzymatic activity, differences in soil abiotic properties (except C to N ratio) were primarily driven by soil depth for both vegetation types. Further, we found significant differences in soil microbiome under invasion in relation to native vegetation. Microbial richness and diversity were lower in both horizons of Q. rubra vs control plots. Moreover, Q. rubra increased relative abundance of unique amplicon sequence variants in both horizons and thereby significantly changed the structure of the core soil microbial communities, in comparison to the control plots. In addition, predicted microbial functional groups indicated a predominant soil depth effect in both vegetation plots with higher abundance of aerobic chemoheterotrophic bacteria and endophytic fungi in the organic horizon and greater abundance of methanotrophic and methylotrophic bacteria, and ectomycorrhizal fungi in the mineral horizon. Overall, our results indicate strong associations between Q. rubra invasion and changes in soil microbiome and associated functions, a finding that needs to be further investigated to predict modifications in ecosystem functioning caused by this invasive species.

Old-growth forest versus generalist lichens: Sensitivity to prolonged desiccation stress and photosynthesis reactivation rate upon rehydration.

Most epiphytic lichens demonstrate high specificity to a habitat type, and sensitive hygrophilous species usually find shelter only in close-to-natural forest complexes. Some of them are considered as old-growth forest and/or long ecological continuity indicators. To evaluate general links between the narrow ecological range and physiological traits, two distinct sets of model lichens, i.e., old-growth forest (Cetrelia cetrarioides (Duby) W.L. Culb. & C.F. Culb., Lobaria pulmonaria (L.) Hoffm., Menegazzia terebrata (Hoffm.) A. Massal.), and generalist (Flavoparmelia caperata (L.) Hale, Hypogymnia physodes (L.) Nyl., Parmelia sulcata Taylor) ones, were examined in terms of sensitivity to long-term desiccation stress (1-, 2-, and 3-month) and photosynthesis activation rate upon rehydration. Desiccation tolerance and response rate to rehydration are specific to a given ecological set of lichens rather than to a particular species. Noticeable delayed and prompt recovery of high photosynthetic activity of photosystem II (PSII) characterize these sets, respectively. At the same time, although a decrease in the potential quantum yield of PSII in lichen thalli with a relative water content (RWC) at the level of 25% was observed, the efficiency remained at a very high level for all species, regardless of habitat preferences. Among the examined lichens, the fluorescence emission parameters for F. caperata were the fastest toward equilibrium upon rehydration, both after a shorter and a longer period of desiccation stress. In contrast to generalist lichens, retrieving of photosynthesis after 3-month desiccation failed in old-growth forest lichens. In the long term, prolonged rainless periods and unfavorable water balance in the environment predicted in the future may have a severely limiting effect on hygrophilous lichens during growing season (also in the sense of species associations) and, at the same time, promote the development of generalists.

Vascular plant and cryptogam abundance as well as soil chemical properties shape microbial communities in the successional gradient of glacier foreland soils.

In the glacier forelands, microbes play a fundamental role in soil development and shaping the vegetation structure. Such ecosystems represent various stages of soil development and are, therefore, an excellent place to study the interrelationship between soil, plants, and microorganisms. The aim of the study was to assess the effects of vegetation and soil physicochemical properties developing after glacier retreat on soil microbial communities. Specifically, abundance, species richness and the composition of arbuscular mycorrhizal fungi (AMF), as well as microbial biomass and community structure in soils were compared between plots established in 800-meter transects of three glacier forelands in northern Sweden. The cover of vascular plants and cryptogams, soil C content, AMF spore density and species richness, AMF biomass indicators, total microbial biomass, and bacterial phospholipid fatty acids (PLFA) were significantly and positively related to the distance from the glacier terminus. On the other hand, macronutrient concentrations and pH decreased along with increasing distance. No significant impact of the distance from the glacier terminus on the ratio fungal/bacterial PLFA was observed. Moreover, we found a significant effect of both glacier and the distance from the glacier terminus on the microbial community structure. AMF species richness and spore density in the glacier forelands were generally low, which is probably due to a limited supply of inoculum in primary successional ecosystems. Most microbial biochemical markers and AMF parameters were positively associated with the number of arbuscular mycorrhizal plant species and vascular plant and lichen cover as well as C content in soil, whereas negatively with soil macronutrients and pH. This could be related to an increase in plant cover and a decrease in soil nutrient levels as plant succession progresses. Our results showed that vegetation, soil C content, and microbial communities are interlinked and exhibit concordant patterns along successional gradients.

Herbaceous plant species support soil microbial performance in deciduous temperate forests.

Although herbaceous plant layer may contribute significantly to plant diversity and nutrient turnover, its effects on the soil environment in forest ecosystems remain largely unexplored. In this study, we compared the effects of mono-dominant and multi-species assemblages of herb plants on soil physicochemical and microbial properties in two temperate deciduous (beech and riparian) forests. We hypothesized that the presence of herbaceous plants would increase microbial activity and biomass, and nutrient availability in soil when compared to bare soil. This increase would be the highest in multi-species assemblages as high plant diversity supports microbial performance and soil processes, and the expected patterns would be essentially similar in both forests. Allium ursinum L. and Dentaria enneaphyllos L. represented herb species forming mono-dominant patches in beech forest, while Aegopodium podagraria L. and Ficaria verna Huds. represented herb species forming mono-dominant patches in riparian forest. Our hypotheses were only partly supported by the data. We found that herb plant species affected soil microbial communities and processes, particularly in the riparian forest, but they generally did not influence soil physicochemical properties. In the beech forest, herbaceous plants increased saprotrophic fungi biomass, fungi/bacteria ratio, and arylsulfatase activity, with the highest values under D. enneaphyllos. In the riparian forest, a number of microbial parameters, namely bacteria, G+ bacteria, and saprotrophic fungi biomass, fungi/bacteria ratio, and soil respiration exhibited the lowest values in bare soil and the highest values in soil under A. podagraria. Contrary to expectations, soils under multi-species assemblages were characterized by intermediate values of microbial parameters. Concluding, herbaceous plant species largely supported soil microbial communities in deciduous temperate forests but did not affect soil chemical properties. The potential reasons for the positive influence of herb plants on soil microbes (litterfall, rhizodeposition) require further investigation.

Functional traits predict resident plant response to Reynoutria japonica invasion in riparian and fallow communities in southern Poland.

Reynoutria japonica is one of the most harmful invasive species in the world, dramatically reducing the diversity of resident vegetation. To mitigate the impact of R. japonica on ecosystems and properly manage affected areas, understanding the mechanisms behind this plant's invasive success is imperative. This study aimed to comprehensively analyse plant communities invaded by R. japonica, taking into account species traits, habitat conditions and seasonal variability, and to determine the ecological profile of species that withstand the invader's pressure. The study was performed in fallow and riparian areas in southern Poland. Pairs of adjacent plots were established at 25 sites with no obvious signs of recent human disturbance. One plot contained R. japonica, and the other contained only resident vegetation. For each plot, botanical data were collected and soil physicochemical properties were determined. Twelve sites were surveyed four times, in two springs and two summers, to capture seasonal variability. The presence of R. japonica was strongly associated with reduced resident plant species diversity and/or abundance. In addition to the ability to quickly grow and form a dense canopy that shades the ground, the success of the invader likely resulted from the production of large amounts of hard-to-decompose litter. The indirect impact of R. japonica by controlling the availability of nutrients in the soil might also play a role. A few species coexisted with R. japonica. They can be classified into three groups: (i) spring ephemerals - geophytic forbs with a mixed life history strategy, (ii) lianas with a competitive strategy and (iii) hemicryptophytic forbs with a competitive strategy. Species from the first two groups likely avoided competition for light by temporal or spatial niche separation (they grew earlier than or above the invasive plant), whereas the high competitive abilities of species from the third group likely enabled them to survive in R. japonica patches.

Invasive plant Reynoutria japonica produces large amounts of phenolic compounds and reduces the biomass but not activity of soil microbial communities.

Reynoutria japonica is one of the most invasive plant species. Its success in new habitats may be associated with the release of secondary metabolites. The aim of this study was to compare phenolic concentrations in plant biomass and soils between plots with R. japonica and resident plants (control), and determine the effects of these compounds on soil microbial communities. Samples of plant shoots and rhizomes/roots, and soil were collected from 25 paired plots in fallow and riparian habitats in Poland. We measured concentrations of total phenolics, condensed tannins, catechin, chlorogenic acid, emodin, epicatechin, hyperoside, physcion, piceatannol, polydatin, procyanidin B3, quercetin, resveratrol, and resveratroloside. Soil microbial parameters were represented by acid and alkaline phosphomonoesterases, ß-glucosidase, phenoloxidase, and peroxidase activity, culturable bacteria activity and functional diversity measured with Biolog Ecoplates, and microbial biomass and community structure measured with phospholipid fatty acid (PLFA) analysis. We found that concentrations of total phenolics and condensed tannins were very high in R. japonica leaves and rhizomes/roots, and concentrations of most phenolic compounds were very high in R. japonica rhizomes/roots when compared to resident plant species. Concentrations of most phenolics in mineral soil did not differ between R. japonica and control plots; the only exceptions were catechin and resveratrol which were higher and lower, respectively, under the invader. Total microbial and bacterial (G+, G-) biomass was decreased by approx. 30% and fungal biomass by approx. 25% in invaded soils in comparison to control. Among soil functional microbial parameters, only peroxidase activity and functional diversity differed between R. japonica and resident plant plots; peroxidase activity was higher, while functional diversity was lower in soil under R. japonica. The negative effects of R. japonica on microbial biomass may be related to catechin or its polymers (proanthocyanidins) or to other phenolics contained in high concentrations in R. japonica rhizomes.

Congruence between the prioritisation of conservation problems at the local and national scale: an evaluation by environmental scientists in Poland.

The anthropogenic pressure on the environment depends on the spatial scale. It is crucial to prioritise conservation actions at different spatial scales to be cost-efficient. Using horizon scanning with the Delphi technique, we asked what the most important conservation problems are in Poland at local and national scales. Twenty-six participants, PhD students, individually identified conservation issues important at the local and national scales. Each problem was then scored and classified into broader categories during the round discussions. Text mining, cross-sectional analyses, and frequency tests were used to compare the context, importance scores, and frequency of identified problems between the two scales, respectively. A total of 115 problems were identified at the local scale and 122 at the national scale. Among them, 30 problems were identical for both scales. Importance scores were higher for national than local problems; however, this resulted from different sets of problems identified at the two scales. Problems linked to urbanisation, education, and management were associated with the local scale. Problems related to policy, forestry, and consumerism were more frequent at the national scale. An efficient conservation policy should be built hierarchically (e.g. introducing adaptive governance), implementing solutions at a national scale with the flexibility to adjust for local differences and to address the most pressing issues.

Soil organic matter prevails over heavy metal pollution and vegetation as a factor shaping soil microbial communities at historical Zn-Pb mining sites.

This study examined the effects of soil heavy metals, macronutrients, texture and pH as well as plant species richness and composition on soil respiration, enzymatic activity, microbial biomass, metabolic quotient (qCO2) and arbuscular mycorrhizal fungi (AMF) at sites of historical Zn-Pb mining. The study was conducted both on a large scale (65 heaps scattered over the area of 750 km2) and on a small scale (25 plots along two 48 m transects extending from heaps to adjacent fallow fields). Total concentrations of metals exceeded 400 (Cd), 20,000 (Pb) and 80,000 (Zn) mg kg-1 at the most polluted sites. Although they decreased along the heap-fallow direction, they still remained above environmental standards in fallow soils. In contrast, some soluble metal forms increased with the increasing distance from heaps. Soil organic matter had the strongest positive effect on most microbial parameters. Total and/or available heavy metals exhibited significant negative effects on microbial biomass, enzymatic activity and AMF, and a positive effect on qCO2. Organic matter alleviated negative effects of heavy metals on microorganisms; they were not observed where the increase in the contamination was accompanied by the increase in organic matter content. Plant species richness affected positively enzymatic activity and mycorrhization level. Plant species composition possibly contributed to the formation of soil microbial communities, but its effect was entangled in that of heavy metals as plant communities changed along pollution gradients (from metal-tolerant grasslands dominated by Festuca ovina to calcareous grasslands and ruderal communities at less polluted sites).

Invasive Quercus rubra negatively affected soil microbial communities relative to native Quercus robur in a semi-natural forest.

Invasive tree species can exert a profound effect on soil properties and ecosystem processes. Quercus rubra is a Northern American species that has an invader status in many European countries. However, the direction and magnitude of its effect on soil physicochemical and microbial properties relative to native tree species in forests are largely unknown. The aim of this study was to investigate the influence of invasive Q. rubra on physicochemical and microbial properties of soil organic and mineral horizons in comparison to native Quercus robur in a semi-natural forest. The study was performed on 23 Q. rubra and 10 Q. robur stands in the Niepolomice Forest (southern Poland). A number of soil parameters were assessed, namely moisture, water holding capacity, electrical conductivity, pH, organic C, total N, respiration, bacterial and fungal biomass and community structure (phospholipid fatty acid and ergosterol analyses). As soil properties are influenced by the quality of leaf litter deposited by trees, senesced Q. rubra and Q. robur leaves were characterized in terms of C, Ca, Mg, K, N, P, total phenolics and condensed tannins concentrations. It was found that total microbial and bacterial biomass was significantly lower under Q. rubra than Q. robur in both soil horizons. Microbial community structure of organic horizon also differed between the two Quercus species. In contrast, no differences were found in fungal biomass and soil physicochemical variables. The reduction in microbial and bacterial biomass beneath Q. rubra may be associated with the quantity and quality of its litter. Senesced Q. rubra leaves were characterized by significantly higher C/N and C/P ratios relative to those of Q. robur. Preliminary data indicate that although they had lower concentrations of phenolics and condensed tannins, the pools of these compounds supplied to the soil were higher due to higher litter production by Q. rubra.

Long-term moss monitoring of atmospheric deposition near a large steelworks reveals the growing importance of local non-industrial sources of pollution.

Although air quality in Europe is continually improving, there are regions, especially in central and eastern European countries, where this trend has been unnoticeable and even reversed in recent years. To understand the possible reasons for the persistence of these pollution "hotspots", we investigated the case of the Kraków region (S Poland) known for its heavy pollution caused by a large steelworks. In 1975, at the apogee of industrial emissions, atmospheric deposition of trace metals was evaluated in this area using moss Pleurozium schreberi as a biomonitor. The survey was repeated in 1992, 1998 and 2014. The collected data showed that air quality improved significantly over 40 years: the amount of Cd, Pb, Fe, Cu and Zn accumulated by mosses decreased by a factor of 10, 9, 3.5, 2 and 2, respectively. The downward trend continued for most metals throughout the study period, although the biggest changes occurred at the very beginning (1975-1992). This improvement was mostly due to drops in industrial production and the introduction of environmentally friendly technologies. At the end of the study (1998-2014), clear increases in the concentrations of some trace metals in moss were observed (overall or at some locations). Spatiotemporal variability of moss elemental composition suggests that this is the result of the recent emergence of new (non-industrial) sources of metal pollution, associated with the urban sprawl and intensification of agriculture. Since this process is unlikely to stop in the near future, air quality will deteriorate rather than improve.

Invasion of Rosa rugosa induced changes in soil nutrients and microbial communities of coastal sand dunes.

The aim of this study was to investigate the influence of R. rugosa invasion on soil physicochemical and microbial properties of coastal sand dunes. The study was performed at 25 paired invaded-native plots along the Hel Peninsula at the coast of the Baltic Sea. A number of soil physicochemical and microbial parameters were measured, namely organic matter layer thickness, pH, electrical conductivity, organic C, total Ca, N, Na, P, N-NH4, N-NO3 and P-PO4 concentrations, phospholipid and neutral fatty acid (PLFA, NLFA) markers of total microbial, bacterial, fungal biomass and microbial community structure, as well as arbuscular mycorrhizal fungi (AMF) spore and species numbers, and the degree of AMF root colonization. Since potential alterations in soil parameters induced by R. rugosa may be related to large amounts of secondary metabolites provided to the soil with litter or root exudates, total phenolic concentration in senescing tissues of R. rugosa and native species was compared. Rosa rugosa invasion was associated with increased organic C, total N and P-PO4 concentrations in mineral soil relative to native vegetation. Organic matter layer under R. rugosa was thicker, had higher pH and Ca concentration. Rosa rugosa invasion was associated with reduced total microbial, bacterial and G+ bacterial biomass and increased AMF biomass markers (16:1ω5 NLFA and 16:1ω5 NLFA/PLFA), and changes in microbial community structure in mineral soil. The reduction in total and bacterial biomass under R. rugosa might have been related to the production of secondary metabolites as total phenolic concentration was approx. 5 times higher in senescing tissues of R. rugosa than in native vegetation. The observed increase in element concentrations and alterations in microbial community structure suggest that invasion of R. rugosa may threaten nutrient-poor habitats of coastal dunes. Changes in the soil environment may hinder restoration of these valuable habitats after invader removal.

Relationships between waste physicochemical properties, microbial activity and vegetation at coal ash and sludge disposal sites.

The aim of the study was to assess the relationships between vegetation, physicochemical and microbial properties of substrate at coal ash and sludge disposal sites. The study was performed on 32 plots classified into 7 categories: dried ash sedimentation ponds, dominated by a grass Calamagrostis epigejos (AH-Ce), with the admixture of Pinus sylvestris (AH-CePs) or Robinia pseudoacacia (AH-CeRp), dry ash landfill dominated by Betula pendula and Pinus sylvestris (AD-BpPs) or Salix viminalis (AD-Sv) and coal sludge pond with drier parts dominated by Tussilago farfara (CS-Tf) and the wetter ones by Cyperus flavescens (CS-Cf). Ash sites were covered with soil layer imported as a part of technical reclamation. Ash had relatively high concentrations of some alkali and alkaline earth metals, Mn and pH, while coal sludge had high water and C, S, P and K contents. Concentrations of heavy metals were lower than allowable limits in all substrate types. Microbial biomass and, particularly, enzymatic activity in ash and sludge were generally low. The only exception were CS-Tf plots characterized by the highest microbial biomass, presumably due to large deposits of organic matter that became available for aerobic microbial biomass when water level fell. The properties of ash and sludge adversely affected microbial biomass and enzymatic activity as indicated by significant negative correlations between the content of alkali/alkaline earth metals, heavy metals, and macronutrients with enzymatic activity and/or microbial biomass, as well as positive correlations of these parameters with metabolic quotient (qCO2). Plant species richness and cover were relatively high, which may be partly associated with alleviating influence of soil covering the ash. The effect of the admixture of R. pseudoacacia or P. sylvestris to stands dominated by C. epigejos was smaller than expected. The former species increased NNH4, NNO3 and arylsulfatase activity, while the latter reduced activity of the enzyme.

Waste heaps left by historical Zn-Pb ore mining are hotspots of species diversity of beech forest understory vegetation.

Metalliferous mining and smelting industries are associated with very high levels of heavy metal(loid) contamination of the environment. Heavy metals have been proved to significantly influence the species diversity and composition of grassland communities, but little is known on their effects on forest understory vegetation. Therefore, the aim of this study was to investigate the effects of the presence of small heaps of waste rock left by historical Zn-Pb ore mining on understory vegetation. The heaps are scattered over vast areas of beech forests in southern Poland. Three types of study plots were established: (1) on waste heaps themselves, (2) in their vicinity (5-10m from the foot of the heaps, with no waste rock but potentially influenced by the heaps through drainage water), and (3) at least 100m from the foot of the heaps (pseudo-control). In all plots vegetation parameters, i.e., plant species number, cover and community composition, life forms and strategies, as well as basic soil properties were assessed. Although the heaps contained high concentrations of metals, namely Cd, Pb and Zn, they were characterised by higher cover and diversity of understory vegetation, including ancient forest and endangered species, in comparison to their surroundings. They were also characterised by the distinct species composition of their plant communities. This might have resulted from the beneficial influence of high pH and Ca content originating from waste rock composed of dolomite and calcite, as well as from increased habitat heterogeneity, e.g. soil skeleton and steeper slopes. Another important factor influencing the richness and composition of understory was tree cover, which relates to the light transmissibility of the canopy. Our study proved that the disturbance brought about by the former mining and processing of metal ores led to the formation of species-rich understory with high frequency and cover of naturally-valuable species.

Few effects of invasive plants Reynoutria japonica, Rudbeckia laciniata and Solidago gigantea on soil physical and chemical properties.

Biological invasions are an important problem of human-induced changes at a global scale. Invasive plants can modify soil nutrient pools and element cycling, creating feedbacks that potentially stabilize current or accelerate further invasion, and prevent re-establishment of native species. The aim of this study was to compare the effects of Reynoutria japonica, Rudbeckia laciniata and Solidago gigantea, invading non-forest areas located within or outside river valleys, on soil physical and chemical parameters, including soil moisture, element concentrations, organic matter content and pH. Additionally, invasion effects on plant species number and total plant cover were assessed. The concentrations of elements in shoots and roots of invasive and native plants were also measured. Split-plot ANOVA revealed that the invasions significantly reduced plant species number, but did not affect most soil physical and chemical properties. The invasions decreased total P concentration and increased N-NO3 concentration in soil in comparison to native vegetation, though the latter only in the case of R. japonica. The influence of invasion on soil properties did not depend on location (within- or outside valleys). The lack of invasion effects on most soil properties does not necessarily imply the lack of influence of invasive plants, but may suggest that the direction of the changes varies among replicate sites and there are no general patterns of invasion-induced alterations for these parameters. Tissue element concentrations, with the exception of Mg, did not differ between invasive and native plants, and were not related to soil element concentrations.

The accumulation of elements in plants growing spontaneously on small heaps left by the historical Zn-Pb ore mining.

The study evaluated the levels of nine metals, namely Ca, Cd, Fe, K, Mg, Mn, Pb, Tl, and Zn, in soils and tissues of ten plant species growing spontaneously on heaps left by historical mining for Zn-Pb ores. The concentrations of Cd, Pb, Tl, and Zn in heap soils were much higher than in control soils. Plants growing on heaps accumulated excessive amounts of these elements in tissues, on average 1.3-52 mg Cd kg(-1), 9.4-254 mg Pb kg(-1), 0.06-23 mg Tl kg(-1) and 134-1479 mg Zn kg(-1) in comparison to 0.5-1.1 mg Cd kg(-1), 2.1-11 mg Pb kg(-1), 0.02-0.06 mg Tl kg(-1), and 23-124 mg Zn kg(-1) in control plants. The highest concentrations of Cd, Pb, and Zn were found in the roots of Euphorbia cyparissias, Fragaria vesca, and Potentilla arenaria, and Tl in Plantago lanceolata. Many species growing on heaps were enriched in K and Mg, and depleted in Ca, Fe, and Mn. The concentrations of all elements in plant tissues were dependent on species, organ (root vs. shoot), and species-organ interactions. Average concentrations of Ca, K, and Mg were generally higher in shoots than in roots or similar in the two organs, whereas Cd, Fe, Pb, Tl, and Zn were accumulated predominantly in the roots. Our results imply that heaps left by historical mining for Zn-Pb ores may pose a potential threat to the environment and human health.