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Synchronization (insertions-deletions) errors are still a major challenge for reliable information retrieval in DNA storage. Unlike traditional error correction codes (ECC) that add redundancy in the stored information, multiple sequence alignment (MSA) solves this problem by searching the conserved subsequences. In this paper, we conduct a comprehensive simulation study on the error correction capability of a typical MSA algorithm, MAFFT. Our results reveal that its capability exhibits a phase transition when there are around 20% errors. Below this critical value, increasing sequencing depth can eventually allow it to approach complete recovery. Otherwise, its performance plateaus at some poor levels. Given a reasonable sequencing depth (≤ 70), MSA could achieve complete recovery in the low error regime, and effectively correct 90% of the errors in the medium error regime. In addition, MSA is robust to imperfect clustering. It could also be combined with other means such as ECC, repeated markers, or any other code constraints. Furthermore, by selecting an appropriate sequencing depth, this strategy could achieve an optimal trade-off between cost and reading speed. MSA could be a competitive alternative for future DNA storage.
Assuntos
Algoritmos , DNA , Alinhamento de Sequência , DNA/genética , Simulação por Computador , Análise de Sequência de DNARESUMO
The exceptional strength of nanolaminates is attributed to the influence of their fine stratification on the movement of dislocations. Through atomistic simulations, the impact of interfacial structure on the dynamics of an edge dislocation, which is compelled to move within a nanoscale layer of a nanolaminate, is examined for three different nanolaminates. In this study, we model confined layer slip in three structures: nanolaminated Ag and two types of Ag/Cu nanolaminates. We find that the glide motion is jerky in the presence of incoherent interfaces characterized by distinct arrays of misfit dislocations. In addition, the glide planes exhibit varying levels of resistance to dislocation motion, where planes with intersection lines that coincide with misfit dislocation lines experience greater resistance than planes without such intersection lines.
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With the rapid development of DNA (deoxyribonucleic acid) storage technologies, storing digital images in DNA is feasible. Meanwhile, the information security in DNA storage system is still a problem to solve. Therefore, in this paper, we propose a DNA storage-oriented image encryption algorithm utilizing the information processing mechanisms in molecule biology. The basic idea is to perform pixel replacement by gene hybridization, and implement dual diffusion by pixel diffusion and gene mutation. The ciphertext DNA image can be synthesized and stored in DNA storage system after encryption. Experimental results demonstrate it can resist common attacks, and shows a strong robustness against sequence loss and base substitution errors in the DNA storage channel. A DNA storage-oriented image encryption algorithm based on gene hybridization and gene mutation, First, we scramble rows and columns of the plaintext image by dynamic Josephus traversing. Second, we replace the pixels by gene hybridization. Finally, we diffuse the image matrix in binary domain and encode pixels into 8-base strands which are later further diffused by gene mutation. The ciphertext image can be synthesized according to the mutant gene codes and stored in any DNA storage system.
Assuntos
Algoritmos , Segurança Computacional , Mutação/genética , Difusão , DNA/genéticaRESUMO
Introduction: Rapid development in synthetic technologies has boosted DNA as a potential medium for large-scale data storage. Meanwhile, how to implement data security in the DNA storage system is still an unsolved problem. Methods: In this article, we propose an image encryption method based on the modulation-based storage architecture. The key idea is to take advantage of the unpredictable modulation signals to encrypt images in highly error-prone DNA storage channels. Results and Discussion: Numerical results have demonstrated that our image encryption method is feasible and effective with excellent security against various attacks (statistical, differential, noise, and data loss). When compared with other methods such as the hybridization reactions of DNA molecules, the proposed method is more reliable and feasible for large-scale applications.
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BACKGROUND: In single-stranded DNAs/RNAs, secondary structures are very common especially in long sequences. It has been recognized that the high degree of secondary structures in DNA sequences could interfere with the correct writing and reading of information in DNA storage. However, how to circumvent its side-effect is seldom studied. METHOD: As the degree of secondary structures of DNA sequences is closely related to the magnitude of the free energy released in the complicated folding process, we first investigate the free-energy distribution at different encoding lengths based on randomly generated DNA sequences. Then, we construct a bidirectional long short-term (BiLSTM)-attention deep learning model to predict the free energy of sequences. RESULTS: Our simulation results indicate that the free energy of DNA sequences at a specific length follows a right skewed distribution and the mean increases as the length increases. Given a tolerable free energy threshold of 20 kcal/mol, we could control the ratio of serious secondary structures in the encoding sequences to within 1% of the significant level through selecting a feasible encoding length of 100 nt. Compared with traditional deep learning models, the proposed model could achieve a better prediction performance both in the mean relative error (MRE) and the coefficient of determination (R2). It achieved MRE = 0.109 and R2 = 0.918 respectively in the simulation experiment. The combination of the BiLSTM and attention module can handle the long-term dependencies and capture the feature of base pairing. Further, the prediction has a linear time complexity which is suitable for detecting sequences with severe secondary structures in future large-scale applications. Finally, 70 of 94 predicted free energy can be screened out on a real dataset. It demonstrates that the proposed model could screen out some highly suspicious sequences which are prone to produce more errors and low sequencing copies.
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Three-dimensional printing (3DP) is considered to be one of the important technologies for a new manufacturing mode. When ceramsite sand is used as a 3DP material to produce a mold (core), the printed layer is prone to deviation from the original location. In this study, the continuous stacking of the printed part deviation was termed as pushing dislocation, and a physical model was designed to investigate the pushing dislocation mechanism. When the gravity of the printing layer and the pressure of the sand scraper decreased, or when the supporting force increased, the angle of the sand scraper and the maximum friction of the prelaying layer on the printed part will reduce the pushing dislocation. To optimize the quality of the ceramsite sand mold, experiments on the pushing dislocation were conducted by altering the recoater speed, layer thickness, and bottom support condition (with or without bottom supporting plate). The sample dimensions were obtained by a 3D imaging scanner, and the gas evolution and ignition loss were measured. The results revealed that the dimensional difference of samples continuously decreased and the pushing dislocation was gradually reduced as the recoater speed and layer thickness increased. The pushing dislocation of the X-direction sample was more severe compared with that of the Y-direction sample. Increasing the layer thickness is an effective way of reducing the pushing dislocation. The bottom supporting plate can reduce the pushing dislocation, but the effect was insignificant.
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Although the oncogenic roles of regulator of G protein signaling 20 (RGS20) and its upstream microRNAs (miRNAs) have been reported, their involvement in hepatocellular carcinoma (HCC) remains unexplored. We utilized the starBase, miRDB, TargetScan, and mirDIP databases, along with a dual-luciferase reporter assay and cDNA chip analysis to identify miRNAs targeting RGS20. miR-204-5p was selected for further experiments to confirm its direct targeting and downregulation of the RGS20 expression. To study the miR-204-5p/RGS20 axis in HCC, RGS20 and miR-204-5p were increased in PLC/PRF/5/Hep3B cells, and the viability, hyperplasia, apoptosis, cell cycle, and invasion/migration of the cells were assessed. RGS20 exhibited optimism, while miR-204-5p exhibited pessimism in tumors. miR-204-5p directly targeted RGS20 and downregulated its expression, whereas high RGS20 expression indicated a poor prognosis. Transfection of miR-204-5p inhibited the hyperplasia, migration, and invasion of HCC cells, but promoted apoptosis and influenced the levels of cyclin-dependent kinase 2 (CDK2), cyclin E1, B-cell lymphoma-2 (Bcl-2), Bax, and cleaved caspase-3/8. These effects were reversed by overexpression of RGS20. We recognized miR-204-5p as an upstream regulator targeting RGS20, thereby inhibiting HCC progression by downregulating RGS20 expression. RGS20 may prove to be a potential target for HCC treatment, and miR-204-5p might seem like to be a potential miRNA in gene therapy.
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In this study, Ti-6Al-4V matrix composites reinforced with TiB ceramic whiskers were in situ synthesized and hydrogenated using the melt hydrogenation technique (MHT). The effects of MHT on the microstructure evolution and hot compression behavior of the composites were investigated by optical microscopy (OM), electron backscatter diffraction (EBSD), and transmission electron microscopy (TEM). Hot compression tests were performed at strain rates of 0.1/s, 0.01/s, and 0.001/s and temperatures of 800 °C, 850 °C, and 900 °C; the hot workability of composites significantly improved after hydrogenation, for example, the 900 °C peak flow stress of hydrogenated composites (43 MPa) decreased by 53.76% compared with that of unhydrogenated ones (93 MPa) at a strain rate of 0.01/s. Microstructural observations show that MHT can effectively facilitate the dispersion of TiB whiskers and induce the α/ß lath refinement of the matrix in our as-cast hydrogenated composite. During hot compression, MHT effectively promoted the as-cast composite microstructure refinement, accelerated the dynamic recrystallization (DRX) generation, and reduced the stress concentration at the interface between the reinforcement and matrix; in turn, the hydrogenated composites presented low peak stress during hot compression.
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The electrocatalytic oxygen evolution reaction (OER) is important for many renewable energy technologies. Developing cost-effective electrocatalysts with high performance remains a great challenge. Here, we successfully demonstrate our novel interface catalyst comprised of Ni3Fe1-based layered double hydroxides (Ni3Fe1-LDH) vertically immobilized on a two-dimensional MXene (Ti3C2Tx) surface. The Ni3Fe1-LDH/Ti3C2Tx yielded an anodic OER current of 100 mA cm-2 at 0.28 V versus reversible hydrogen electrode (RHE), nearly 74 times lower than that of the pristine Ni3Fe1-LDH. Furthermore, the Ni3Fe1-LDH/Ti3C2Tx catalyst requires an overpotential of only 0.31 V versus RHE to deliver an industrial-level current density as high as 1000 mA cm-2. Such excellent OER activity was attributed to the synergistic interface effect between Ni3Fe1-LDH and Ti3C2Tx. Density functional theory (DFT) results further reveal that the Ti3C2Tx support can efficiently accelerate the electron extraction from Ni3Fe1-LDH and tailor the electronic structure of catalytic sites, resulting in enhanced OER performance.
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The microstructures and morphologies of directionally solidified Ti-47Al alloys with different growth rates ranging from 1 to 200 µm/s were investigated using the Bridgman directionally solidified method. The results showed that numerous columnar grains were formed along the growth direction with the onset of directional solidification. With a variation in the growth rate, the solid/liquid interface changed from a flat to cellular and to dendritic interface. The flat-to-cellular interface transition rate of the Ti-47Al alloy varied from 1 to 3 µm/s. When the growth rate was higher than 10 µm/s, the solid/liquid interface showed typical dendritic growth. During the directional solidification process, the main phase of the directionally solidified Ti-47Al alloy was the α phase, which can be attributed to the solute segregation, supercooling of the components, and contamination of the alloy melt by the Y2O3 ceramic shell. After reaching the steady growth state during the directional solidification process, the solidification path of the alloy was: Lâαâα+γâ(α2+γ) + γ. With an increase in the growth rate, the primary dendrite spacing (λ) and lamellar spacing (λs) of the alloy decreased gradually.
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Lightweight ZrTiVAl high-entropy alloys have shown great potential as a hydrogen storage material due to their appreciable capacity, easy activation, and fast hydrogenation rates. In this study, transition metal Fe was used to improve the hydrogen storage properties of the equimolar ZrTiVAl alloy, and ZrTiVAl1-x Fe x (x = 0, 0.2, 0.4, 0.6, 0.8, 1) alloys were prepared to investigate the microstructure evolution and hydrogen storage properties. The results show that the ZrTiVAl1-x Fe x alloys are composed of a C14 Laves phase and Ti-rich HCP phase. With Fe substituting Al, the fraction of the C14 Laves phase increases and that of the HCP phase decreases. Besides, the interdendritic area fraction reaches the maximum when the Fe ratio is 0.2. The element V transferred to the C14 Laves phase from the HCP phase, which is caused by the strong affinity between V and Fe. The ZrTiVAl1-x Fe x alloys show enhanced hydrogenation kinetics and capacities. Notably, the ZrTiVFe alloy can reversely absorb 1.58 wt% hydrogen even at room temperature under 1 MPa H2. The reduced interdendritic phase is beneficial to shorten the H atom diffusion distance, thus improving the hydrogenation rates. Both the transfer of the hydrogen-absorbing element V to the C14 Laves phase and the increased fraction of the C14 Laves phase lead to the increase of hydrogen storage capacity with the addition of Fe. Moreover, the increased Fe content leads to an increase of average valence electron concentration (VEC), where a larger VEC destabilizes the hydrides, and the desorption temperature of ZrTiVAl1-x Fe x hydride decreases significantly.
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Improving the hot workability and reducing the processing cost are critical steps to expanding the application of TiC/Ti-6Al-4V composites. This study employed melt hydrogenation to fabricate TiC/Ti-6Al-4V composites under a mixed atmosphere of hydrogen and argon. Experimental results indicated that hydrogen had an obvious influence on the growth and morphology of eutectic TiC particles, and the size of eutectic TiC and primary ß grains was significantly increased. As a result, large-sized eutectic TiC was distributed along the grain boundaries of primary ß grains. Hot compression results showed that the peak flowing stress of composites was reduced by hydrogen, which resulted in an improvement of hot workability, especially in the (α + ß) phase region, and the best results were obtained at 900 °C/0.01 s-1, at which the peak stress decreased from 241 ± 9 to 190 ± 8 MPa (a decrease of 21.2%). Inspection of the microstructure after hot compression showed that hydrogen improved the proportion of DRX grains from ~62.7% to ~83.2%, and hydrogen also decreased the density of dislocations, which were attributed to hydrogen accelerating atomic diffusion. Enhanced hot workability resulted from hydrogen atoms decreasing the atomic bonding force of the titanium matrix, hydrogen reducing the ß/(α + ß) transition temperature, the higher proportion of DRX, and the higher mobility of dislocations. It is expected that the findings of this study may support the development of a simple and efficient method to reduce the processing cost of TiC/Ti-6Al-4V composites.
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In this paper, high-silicon Al-42Si alloy was prepared by selective laser melting (SLM) with different process parameters. Microstructures evolution and defects formation were studied and process parameters were optimized. The results shown that the density of SLM-fabricated Al-42Si alloy increases as input energy density increases. The highest and lowest density of SLM-fabricated Al-42Si alloy are obtained, when input energy density is 42.9J/mm3 and 33.8J/mm3 respectively. The microstructures of Al-42Si alloy fabricated by selective laser melting is mainly composed of primary silicon phase and eutectic silicon phase, which is distinct from casting alloy because of diffient grains size and shapes of the primary silicon. With higher energy density, larger size of the primary silicon observed during process due to higher heat released by powder. The size of primary silicon phase particles is in the range of 2.9-9.4µm, and the size of molten pool during SLM process is in the range of 125 ± 10µm-140 ± 10µm in this study. Also the hardness of SLM-fabricated Al-42Si alloy increases as input energy density increases between 40.0J/mm3 and 42.9J/mm3. After heat treatment, the residual stress is eliminated, microstructure stability and homogeneous of SLM-fabricated Al-42Si alloy are improved. The silicon distribution is more uniform and sizes increases about 1â¼2µm, and the hardness decreases after heat treatment. The optimal SLM parameters for Al-42Si alloy are laser power of 320W, scanning speed of 1355 mm/s, layer thickness of 50µm and scanning space of 110µm.
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Because of their superior mechanical performance at ultra-high temperatures, refractory niobium-silicon-based alloys are attractive high-temperature structural alloys, particularly as structural components in gas turbine engines. However, the development of niobium-silicon-based alloys for applications is limited because of the trade-off between room temperature fracture toughness and high-temperature strength. Here, we report on the fabrication of a Nb-18Si alloy with dispersion of hafnium carbide (HfC) particles through selective laser melting (SLM). XRD and SEM-BSE were used to examine the effects of scanning speed on the microstructure and the phase structure of the deposited Nb-18Si-5HfC alloy. The results show that when the scanning speed rises, the solid solubility of the solid solution improves, the interlamellar spacing of eutectics slowly decrease into nano-scale magnitude, and the corresponding hafnium carbide distribution becomes more uniform. We also discover the hafnium carbide particles dispersion in the inter-lamella structure, which contributes to its high fracture toughness property of 20.7 MPaâm1/2 at room temperature. Hardness and fracture toughness are simultaneously improved because of the control of microstructure morphology and carbide distribution.
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In order to acquire TiAl composites with a multi-scale reinforcing phase, and to improve the microstructure and tensile properties at elevated temperatures, TiAl alloys have been prepared with different added carbon content levels via vacuum arc melting. The results show that when the carbon content is greater than or equal to 1.0 at%, then Ti2AlC forms and the microstructure changes from having a dendrite morphology to an equiaxed crystal morphology. The B2 phase disappears in the Ti2AlC-containing alloys. As the carbon content increases from 0 to 3.0 at%, the lamellar colony size decreases from 148.4 to 32.8 µm and the lamellar width decreases from 441.2 to 117.6 nm. More nanoscale Ti2AlC particles form in the α2 lamellae at a higher carbon content, and there are a lot of dislocations around them. As the carbon content, the Ti2AlC content increases from 0 to 16.8 vol% and the length-diameter ratio decreases from 9.2 to 1.8. The reason for the microstructure refinement is that carbon and carbide act as heterogeneous particles during solidification, and carbide dissolves some alloy elements, improving the microstructure uniformity. Compressive testing shows that the maximum compressive strength is 2324.3 MPa at a carbon content of 1.5%. At a carbon content of 2.5%, the compression strain is higher (28.1%). Tensile testing at elevated temperatures shows that upon increasing the temperature from 750 to 850 °C, the tensile strength increases from 398 to 541 MPa, and the strain increases from 6.1 to 12.2% with a temperature increase from 750 to 950 °C. The increase in the mechanical properties is attributed to the refined lamellar colonies and lamellar width, the solid solution of elements, and the formation of nanoprecipitates.
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Chemodynamic therapy as an emerging therapeutic strategy has been implemented for oncotherapy. However, the reactive oxygen species can be counteracted by the exorbitant glutathione (GSH) produced by the tumor cells before exerting the antitumor effect. Herein, borneol (NB) serving as a monoterpenoid sensitizer, and copper sulfide (CuS NPs) as an NIR-II photothermal agent were loaded in a thermo-responsive vehicle (NB/CuS@PCM NPs). Under 1,060-nm laser irradiation, the hyperthermia produced by CuS NPs can be used for photothermal therapy and melt the phase change material for drug delivery. In the acidity microenvironment, the CuS NPs released from NB/CuS@PCM NPs could degrade to Cu2+, then Cu2+ was reduced to Cu+ during the depletion of GSH. As Fenton-like catalyst, the copper ion could convert hydrogen peroxide into hydroxyl radicals for chemodynamic therapy. Moreover, the NB originated from NB/CuS@PCM NPs could increase the intracellular ROS content to improve the treatment outcome of chemodynamic therapy. The animal experimental results indicated that the NB/CuS@PCM NPs could accumulate at the tumor site and exhibit an excellent antitumor effect. This work confirmed that the combination of oxidative stress-induced damage and photothermal therapy is a potential therapeutic strategy for cancer treatment.
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Fe-Al compounds are of interest due to their combination of light weight, high strength, and wear and corrosion resistance, but new forms that are also ductile are needed for their widespread use. The challenge in developing Fe-Al compositions that are both lightweight and ductile lies in the intrinsic tradeoff between Al concentration and brittle-to-ductile transition temperature. Here, we show that a room-temperature, ductile-like response can be attained in a FeAl/FeAl2 layered composite. Transmission electron microscopy, nanomechanical testing, and ab initio calculations find a critical layer thickness on the order of 1 µm, below which the FeAl2 layer homogeneously codeforms with the FeAl layer. The FeAl2 layer undergoes a fundamental change from multimodal, contained slip to unimodal slip that is aligned and fully transmitting across the FeAl/FeAl2 interface. Lightweight Fe-Al alloys with room-temperature, ductile-like responses can inspire new applications in reactor systems and other structural applications for extreme environments.
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High-entropy alloys (HEAs) with good ductility and high strength are usually prepared by a combination of forging and heat-treatment processes. In comparison, the as-cast HEAs typically do not reach strengths similar to those of HEAs produced by the forging and heat-treatment processes. Here we report a novel equiatomic-ratio CoCrCuMnNi HEA prepared by vacuum arc melting. We observe that this HEA has excellent mechanical properties, i.e., a yield strength of 458 MPa, and an ultimate tensile strength of 742 MPa with an elongation of 40%. Many nanometer precipitates (5-50 nm in size) and domains (5-10 nm in size) are found in the inter-dendrite and dendrite zones of the produced HEA, which is the key factor for its excellent mechanical properties. The enthalpy of mixing between Cu and Mn, Cr, Co, or Ni is higher than those of mixing between any two of Cr, Co, Ni and Mn, which leads to the separation of Cu from the CoCrCuMnNi HEA. Furthermore, we reveal the nanoscale-precipitate-phase-forming mechanism in the proposed HEA.
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Refractory multiprincipal element alloys (MPEAs) are promising materials to meet the demands of aggressive structural applications, yet require fundamentally different avenues for accommodating plastic deformation in the body-centered cubic (bcc) variants of these alloys. We show a desirable combination of homogeneous plastic deformability and strength in the bcc MPEA MoNbTi, enabled by the rugged atomic environment through which dislocations must navigate. Our observations of dislocation motion and atomistic calculations unveil the unexpected dominance of nonscrew character dislocations and numerous slip planes for dislocation glide. This behavior lends credence to theories that explain the exceptional high temperature strength of similar alloys. Our results advance a defect-aware perspective to alloy design strategies for materials capable of performance across the temperature spectrum.
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Experiments have been carried out to study the relationship between the addition of tantalum and microstructure, especially the formation of the B2 phase in lamellar colonies. The mechanical properties, with different contents of Ta, were also measured. Ti46Al8Nb2.6CxTa alloys were prepared by casting with the content of Ta varying from zero to 1.0 at.%. Experimental results show that the B2 phase forms in lamellar colonies with the addition of Ta, and its content increases when the content of Ta increases. Meanwhile, the γ phase decreases and the lattice parameter of the α 2 phase increases. The size of the lamellar colony decreased from 29.9 to 21.6 µm. Ta dissolves into Ti2AlC by substitution, and its solubility is more than 1.1% tested by EDS. Nb, which is necessary for the formation of the B2 phase, comes from two aspects. The first is that Ta dissolves into the Ti2AlC and partly replaces the Nb atom and the second is the decrease in the γ phase because it has higher solid solubility for Nb. The increase in Nb in the liquid phase increases the composition supercooling and heteronucleation at the solidification front, which accounts for refining the lamellar colony. Room temperature compressive testing showed that the compressive strength and the strain increased when the Ta content increased up to 0.8% and then decreased. Improvement of the compressive properties resulted from the grain boundary strengthening and their decrease induced by more content of the B2 phase. Tensile properties, at elevated temperature, were improved with testing temperature increasing from 750 to 950°C, because solid solution strengthening is a major influence factor.