Effects of crowding due to habitat loss on species assemblage patterns.

Terrestrial animals are negatively affected by habitat loss, which is assessed on a landscape scale, whereas secondary effects of habitat loss, such as crowding, are usually disregarded. Such impacts are inherently hard to address and poorly understood, and there is a growing concern that they could have dire consequences. We sampled birds throughout a deforestation process to assess crowding stress in an adjacent habitat remnant in the southern Brazilian Atlantic Forest. Crowding is expected of highly mobile taxa, especially given the microhabitat heterogeneity of Neotropical forests, and we hypothesized that the arrival of new individuals or species in refuges shifts assemblage patterns. We used point counts to obtain bird abundances in a before-after-control-impact design sampling of a deforestation event. Temporal changes in taxonomic and functional diversity were examined with metrics used to assess alpha and beta diversity, turnover of taxonomic and functional similarity, and taxonomic and functional composition. Over time increased abundance of some species altered the Simpson index and affected the abundance-distribution of traits in the habitat remnant. Taxonomic composition and functional composition changed in the remnant, and thus bird assemblages changed over time. Taxonomic and functional metrics indicated that fugitives affected resident assemblages in refuges, and effects endured >2 years after the deforestation processes had ceased. Dissimilarity of taxonomic composition between pre- and postdeforestation assemblages increased, whereas functional composition reverted to preimpact conditions. We found that ecological disruptions resulted from crowding and escalated into disruptions of species' assemblages and potentially compromising ecosystem functioning. It is important to consider crowding effects of highly mobile taxa during impact assessments, especially in large-scale infrastructure projects that may affect larger areas than is assumed.

Efectos del Amontonamiento debido a la Pérdida del Hábitat sobre los Patrones de Ensamblaje de las Especies Resumen Los animales terrestres se ven afectados negativamente por la pérdida del hábitat, la cual es evaluada con una escala de paisaje, mientras que los efectos secundarios de la pérdida del hábitat, como el amontonamiento, suelen ser ignorados. Dichos impactos son inherentemente difíciles de tratar y su entendimiento es muy pobre, además de que existe una preocupación creciente por las posibles consecuencias graves que podrían tener. Muestreamos aves durante un proceso de deforestación para evaluar el estrés por amontonamiento en un hábitat remanente contiguo a la parte sur del Bosque Atlántico Brasileño. Se espera que el amontonamiento ocurra en taxones con mucha movilidad, especialmente en el caso de los heterogéneos bosques Neotropicales, por lo que nuestra hipótesis consistió en suponer que la llegada a los refugios de nuevos individuos o especies modifica los patrones de ensamblado. Usamos el conteo por puntos para obtener la abundancia de las aves en un diseño de muestreo de antes-después-control-impacto de un evento de deforestación. Examinamos los cambios temporales en la diversidad taxonómica y funcional con medidas usadas para evaluar la diversidad alfa y beta, la rotación de la similitud taxonómica y funcional y la composición taxonómica y funcional. Con el tiempo, el incremento en la abundancia de algunas especies alteró el índice Simpson y afectó la abundancia y distribución de los caracteres en el hábitat remanente. La composición taxonómica y la composición funcional cambiaron en el hábitat remanente, por lo que los ensamblajes de aves cambiaron con el tiempo. Las medidas taxonómicas y funcionales indicaron que los individuos fugitivos afectaron a los ensamblajes de residentes en los refugios y sus efectos perduraron más de dos años después de que el proceso de deforestación había culminado. La disparidad de la composición taxonómica entre los ensamblajes antes y después de la deforestación incrementó, mientras que la composición funcional se revirtió a las condiciones previas al impacto. Encontramos que las perturbaciones ecológicas resultaron en el amontonamiento de especies y después escalaron hasta llegar a ser perturbaciones en el ensamblaje de las especies y potencial empobrecimiento del funcionamiento del ecosistema. Es importante considerar los efectos del amontonamiento de los taxones con mucha movilidad durante las evaluaciones de impacto ambiental, especialmente para proyectos con infraestructuras a gran escala que podrían afectar a un área mayor a la supuesta inicialmente.

Metazoan parasites of Micropterus salmoides (Lacépède 1802) (Perciformes, Centrarchidae): a review with evidences of spillover and spillback.

Among the topics related to invasion science, the least studied are parasite co-introduction and spillback. This leads to an uncertainty in invasion ecology theories and applications to management. Therefore, the present study brings a systematic review of published information on the metazoan parasite fauna of Micropterus salmoides, a widely introduced fish, with the aim of comparing information about the composition and richness of the associated parasite communities in its native and introduced regions. This review demonstrates that there were twice as many studies of M. salmoides in its native region in comparison with introduced regions, although most of the studies focused on the analysis of a single species or taxon of parasite. This bias impacts the number of parasite species observed and, consequently, the apparent importance of enemy release in introduced regions. The composition of the parasite community in the two regions showed high similarity, which indicates the introduction and acquisition of parasites in introduced regions. Otherwise, there was no pattern related to the geographic distance, highlighting the influence of the propagule pressure and vector strength on the introduction of novel parasites. This illustrates the importance of vector strength on fish-parasite co-introduction and the necessity of new research examining host-parasite interactions with the parasite community of the invaded ecosystems. We still do not know the major influences of the composition of the parasite fauna of M. salmoides or how we can manage to develop a more restrictive vector pathway of introduction. The future of our ecosystems depends on how to account for current and future interactions among novel interactions, habitat, and climate change.

A systematic review of invasive non-native freshwater bivalves.

The introduction of invasive species has become an increasing environmental problem in freshwater ecosystems due to the high economic and ecological impacts it has generated. This systematic review covers publications from 2010 to 2020, focusing on non-native invasive freshwater bivalves, a particularly relevant and widespread introduced taxonomic group in fresh waters. We collected information on the most studied species, the main objectives of the studies, their geographical location, study duration, and type of research. Furthermore, we focused on assessing the levels of ecological evidence presented, the type of interactions of non-native bivalves with other organisms and the classification of their impacts. A total of 397 publications were retrieved. The studies addressed a total of 17 species of non-native freshwater bivalves; however, most publications focused on the species Corbicula fluminea and Dreissena polymorpha, which are recognised for their widespread distribution and extensive negative impacts. Many other non-native invasive bivalve species have been poorly studied. A high geographical bias was also present, with a considerable lack of studies in developing countries. The most frequent studies had shorter temporal periods, smaller spatial extents, and more observational data, were field-based, and usually evaluated possible ecological impacts at the individual and population levels. There were 94 publications documenting discernible impacts according to the Environmental Impact Classification for Alien Taxa (EICAT). However, 41 of these publications did not provide sufficient data to determine an impact. The most common effects of invasive bivalves on ecosystems were structural alterations, and chemical and physical changes, which are anticipated due to their role as ecosystem engineers. Despite a considerable number of studies in the field and advances in our understanding of some species over the past decade, long-term data and large-scale studies are still needed to understand better the impacts, particularly at the community and ecosystem levels and in less-studied geographic regions. The widespread distribution of several non-native freshwater bivalves, their ongoing introductions, and high ecological and economic impacts demand continued research. Systematic reviews such as this are essential for identifying knowledge gaps and guiding future research to enable a more complete understanding of the ecological implications of invasive bivalves, and the development of effective management strategies.

Assessing the water quality in a World Heritage Site using biomarkers in top fish predators.

The use of biomarkers in fish for biomonitoring is a valuable approach to reveal effects of human impacts on biota health. Top predator fish are effective models for monitoring human activities' impacts on aquatic ecosystems. The Guaraguaçu River is the largest river-system on coastal region of South Brazil and a World Heritage site. The river receives contaminants from disorderly urban growth, including discharges of domestic sewage and small fishery boats, particularly during the tourist season. Our study aimed to assess impact of anthropogenic activities on water quality in the Guaraguaçu River by analyzing environmental contamination biomarkers in the top fish predator Hoplias malabaricus. Fish were collected using a fyke net trap across sectors representing a gradient of anthropic impact: sector 1 - pristine; sector 2 - impacted; and sector 3 - less impacted. Water samples were collected to analyze the presence of trace elements and pesticide. Biomarkers of the antioxidant system, histopathology, genotoxicity, neurotoxicity, and concentration of trace elements were analyzed in fish tissues. In water samples Al, Fe and Mn were detected, but no pesticides were found. In fish muscle, zinc and iron were detected. Brain acetylcholinesterase activity decreased in impacted sectors, indicating neurotoxic effects. The antioxidant system increased activity in gills and liver, and damage from lipoperoxidation was observed, particularly in sector 2 when compared to sector 1, suggesting oxidative stress. Histopathological biomarkers revealed lesions in the liver and gills of fish in impacted sectors. Micronuclei, a genotoxicity biomarker, were observed in organisms from all sectors. Our results demonstrate detrimental effects of poor water quality on biota health, even when contaminants are not detected in water.

Community stability and seasonal biotic homogenisation emphasize the effect of the invasive tropical tanner grass on macrophytes from a highly dynamic neotropical tidal river.

We described the spatial and temporal dynamics of aquatic macrophytes in a Neotropical coastal estuarine river, and identified the negative effects associated to the presence and dominance of the invasive tanner grass. We compared macrophyte beds along the Guaraguaçu River (South Brazil) over four years, using taxonomic and functional dimensions. Biodiversity descriptors were higher in the driest periods compared to the rainiest, although this difference seems to be decreasing over the studied years. Moreover, the spatial organization of biodiversity and community structure slightly changed over time. Such spatial community stability was highlighted by the dominance of the highly invasive tanner grass. In beds dominated by the invasive species, the biodiversity was reduced. As aquatic macrophytes represent an important group in water bodies, the long-term loss of seasonal differences in community structuring is of concern, mainly regarding its potential to impact other groups and ecosystem functioning. By analysing data from standardized monitoring, we were able to identify a poorly discussed facet of biotic homogenisation-the seasonal homogenisation. We also discussed the impact of massive development of invasive species and its consequences for biodiversity in a Neotropical river of outmost importance for biological conservation. Supplementary Information: The online version contains supplementary material available at 10.1007/s00027-022-00858-3.

Thematic assessment report on invasive alien species in Brazil: summary for policymakers / Relatório temático sobre espécies exóticas invasoras no Brasil: sumário para tomadores de decisão

Abstract Biological invasions are one of the major threats to biodiversity and good quality of life, resulting from the translocation of species by human action. There are more than 500 alien species currently invading ecosystems in Brazil, particularly plants and fishes, while little is known about invasive microorganisms. Although invasive alien species are present in all ecosystems in the country, most have been recorded in habitats with greater human interference, such as urban and peri-urban areas, farmland, dams, reservoirs, ports, and canals. Historically, the southern and southeastern regions of Brazil have had more invasive alien species, but there has been an increase in the number of invasive alien species in the central-western and northern regions in recent decades. The ornamental trade of plants and fishes as well as the illegal pet trade of wild mammals and reptiles are some of the main pathways for invasive species introduction and spread in Brazil. Breeding and cultivation systems that allow escape to natural areas are a relevant route of species introductions in freshwater ecosystems, while unintentional introductions from shipping and infrastructure are of extreme concern in marine ecosystems. The negative impacts of invasive alien species on the biota mainly include changes in community structure and local decrease in native species richness, mediated by predation, competition, and ecosystem changes. Most negative impacts are recorded for intentionally introduced species, such as fishes and plants, but unintentional introductions have led to impacts on good quality of life, with associated costs and impacts on human health. The management of biological invasions faces challenges that need to be overcome, such as the lack of public knowledge about the impact of invasive alien species, the popular appeal of charismatic invasive species or those used by humans, and the use of controversial control techniques. However, successful experiences of eradication and control in terrestrial and marine ecosystems have been recorded, some of them involving public engagement in management actions. Recognizing the issue as a cross-cutting public policy and developing ongoing governance experiences are fundamental goals for the management of invasive alien species in Brazil.

Resumo Invasões biológicas são uma das maiores ameaças à biodiversidade e à boa qualidade de vida, ocorrendo a partir da translocação de espécies por ação humana. Existem mais de 500 espécies exóticas invadindo ecossistemas atualmente no Brasil, com destaque para plantas e peixes. Pouco se sabe sobre microrganismos invasores. Apesar de existirem espécies exóticas invasoras em todos os ecossistemas no país, a maior parte dos registros foi feita em hábitats com maior interferência humana, como áreas urbanas, periurbanas, terras cultivadas, represas, reservatórios, portos e canais. Historicamente, as regiões sul e sudeste do Brasil apresentam mais espécies exóticas invasoras, mas nas últimas décadas se tem observado um aumento no número de espécies exóticas invasoras nas regiões centro-oeste e norte. O comércio de plantas e peixes ornamentais, assim como o comércio ilegal de mamíferos e répteis silvestres como animais de estimação são algumas das principais vias de introdução e disseminação de espécies exóticas invasoras no Brasil. Sistemas de criação e cultivo que possibilitam o escape para áreas naturais são uma relevante via de introdução em ecossistemas de águas continentais, enquanto introduções não intencionais a partir de navegação e de infraestrutura são de extrema preocupação em ecossistemas marinhos. Os impactos negativos de espécies exóticas invasoras sobre a biota incluem principalmente alterações na estrutura de comunidades e diminuição local da riqueza de espécies nativas, mediados por predação, competição e modificações ecossistêmicas. A maior parte dos impactos negativos registrados ocorreram para espécies introduzidas intencionalmente, como peixes e plantas, mas introduções não intencionais têm levado a impactos na boa qualidade de vida, com custos associados e impactos sobre a saúde humana. A gestão de invasões biológicas esbarra em desafios a serem superados, tais como a falta de conhecimento do público sobre o impacto de espécies exóticas invasoras, o apelo popular de espécies invasoras carismáticas ou utilizadas por humanos e o emprego de técnicas controversas de controle. Entretanto, experiências bem-sucedidas de erradicação e controle em ecossistemas terrestres e marinhos têm sido registrados, alguns deles envolvendo engajamento público nas ações de manejo. Reconhecer o tema como uma política pública transversal e desenvolver experiências continuadas de governança são metas fundamentais para a gestão e o manejo de espécies exóticas invasoras no Brasil.

Aquaculture expansion in Brazilian freshwaters against the Aichi Biodiversity Targets.

The Convention on Biological Diversity proposed the Aichi Biodiversity Targets to improve conservation policies and to balance economic development, social welfare, and the maintenance of biodiversity/ecosystem services. Brazil is a signatory of the Aichi Biodiversity Targets and is the most diverse country in terms of freshwater fish, but its national policies have supported the development of unsustainable commercial and ornamental aquaculture, which has led to serious disturbances to inland ecosystems and natural resources. We analyzed the development of Brazilian aquaculture to show how current aquaculture expansion conflicts with all 20 Aichi Targets. This case suggests that Brazil and many other megadiverse developing countries will not meet international conservation targets, stressing the need for new strategies, such as the environmental management system, to improve biodiversity conservation.

Traditional scientific data vs. uncoordinated citizen science effort: A review of the current status and comparison of data on avifauna in Southern Brazil.

Data generated by citizen science is particularly valuable in ecological research. If used discerningly with data from traditional scientific references, citizen science can directly contribute to biogeography knowledge and conservation policies by increasing the number of species records in large geographic areas. Considering the current level of knowledge on south Brazilian avifauna, the large volume of data produced by uncoordinated citizen science effort (CS), and the growing need for information on changes in abundance and species composition, we have compiled an updated, general list of bird species occurrence within the state of Paraná. We have listed extinct, invasive and recently-colonizing species as well as indicator species of the state's vegetation types. We further assess the degree of knowledge of different regions within the state based on data from traditional scientific references, and the effect of including CS data in the same analysis. We have compiled data on 766 bird species, based on 70,346 individual records from traditional scientific references, and 79,468 from CS. Extinct and invasive species were identified by comparing their occurrence and abundance over a series of three time periods. Indicator species analysis pointed to the existence of three areas with bird communities typically found within the state: the Semideciduous Tropical Forest, the Tropical Rainforest and the junction of Grassland and Araucaria Moist Forest. We used rarefaction to measure sampling sufficiency, and found that rarefaction curves reached stabilization for all vegetation types except in Savanna. We observed differences in the level of knowledge of bird biodiversity among the microregions of the state, but including CS data, these differences were mitigated. The same effect was observed in other exploratory analyzes conducted here, emphasizing the fundamental importance of including CS data in macroecological studies. Production of easily accessible data and its unrestricted availability makes CS a very important tool, especially in highly diverse regions as the Neotropics, as it can offer a more accurate picture of bird composition in comparison to the exclusive use of traditional scientific references.

Human-Induced Landscape Changes Homogenize Atlantic Forest Bird Assemblages through Nested Species Loss.

The increasing number of quantitative assessments of homogenization using citizen science data is particularly important in the Neotropics, given its high biodiversity and ecological peculiarity, and whose communities may react differently to landscape changes. We looked for evidence of taxonomic homogenization in terrestrial birds by investigating patterns of beta diversity along a gradient of human-altered landscapes (HAL), trying to identify species associated with this process. We analyzed bird data from 87 sites sampled in a citizen science program in the south Brazilian Atlantic Forest. Regional-scale taxonomic homogenization was assessed by comparing beta diversity among sites in different HALs (natural, rural or urban landscapes) accounting for variation derived from geographical distance and zoogeographical affinities by georeferencing sites and determining their position in a phytogeographical domain. Beta diversity was calculated by multivariate dispersion and by testing compositional changes due to turnover and nestedness among HALs and phytogeographical domains. Finally, we assessed which species were typical for each group using indicator species analysis. Bird homogenization was indicated by decreases in beta diversity following landscape changes. Beta diversity of rural sites was roughly half that of natural habitats, while urban sites held less than 10% of the natural areas' beta diversity. Species composition analysis revealed that the turnover component was important in differentiating sites depending on HAL and phytogeography; the nestedness component was important among HALs, where directional species loss is maintained even considering effects of sampling effort. A similar result was obtained among phytogeographical domains, indicating nested-pattern dissimilarity among compositions of overlapping communities. As expected, a few native generalists and non-native urban specialists were characteristic of rural and urban sites. We generated strong evidence that taxonomic homogenization occurs in the south Brazilian Atlantic Forest as a result of a directional and nested species loss, with the resultant assemblages composed of few disturbance-tolerant birds.

A checklist of aquatic macrophytes of the Guaraguaçu river basin reveals a target for conservation in the Atlantic rainforest

Describing and understanding distribution of species in natural ecosystems is the first step to establish conservation efforts. In aquatic habitats, macrophytes play a central role in promoting biodiversity and ecosystem functioning. This study aimed to create the first checklist of aquatic macrophyte species occurring in the Guaraguaçu river, the largest river in Paraná State coast, Brazil. Species herborized, identified and incorporated into the Herbarium collection of the Universidade Federal do Paraná. A total of 47 species were registered corresponding to 37 genera and 29 botanical families; Cyperaceae and Poaceae were the most representative families. In addition, the wide invasion of the non-native species Urochloa arrecta (Hack. ex T. Durand & Schinz) Morrone & Zuloaga was registered and the presence of the floating-leaved non-native species Nymphaea caerulea Savugny was recorded. Even so, the inventory shows a noteworthy richness of aquatic macrophytes species in the Guaraguaçu river, and it is clear macrophyte species reflect a gradient of anthropic impact and salinity in this tidal estuarine river. Our study contributes to the creation of public policies to aid in the protection of this river that represents a central site for biological conservation efforts, yet is constantly threatened by anthropic activities.

Feeding ecology of Rivulus luelingi (Aplocheiloidei: Rivulidae) in a Coastal Atlantic Rainforest stream, southern Brazil

Feeding habits of the killifish Rivulus luelingi collected in a black water stream of the Coastal Atlantic Rainforest in southern Brazil were investigated. Eight samplings were made between April 2003 and January 2004. The diet, assessed through a similarity matrix with the estimated contribution values of food items, included microcrustaceans, aquatic immature insects (larvae and pupae), aquatic adult insects, terrestrial insects, insect fragments, spiders, and plant fragments. Differences in the diet according to temporal variations (months) were registered, but changes related with size classes evaluated and high/low precipitation period were not observed. The species presented an insectivorous feeding habit, and its diet in the studied stream was composed of autochthonous (mainly aquatic immature insects) and allochthonous (mainly insect fragments) material.

Neste estudo foram investigados os hábitos alimentares do peixe anual Rivulus luelingi em um riacho de água escura da Floresta Atlântica Costeira do Sul do Brasil. Oito amostragens foram realizadas entre abril de 2003 e janeiro de 2004. A dieta, avaliada através de uma matriz de similaridade com os valores de contribuição estimados para os itens alimentares, inclui microcrustáceos, insetos imaturos aquáticos, insetos aquáticos e terrestres, fragmentos de insetos, aranhas e fragmentos de plantas. Diferenças relacionadas ao período amostral (meses) foram registradas, mas mudanças na dieta em função das classes de tamanho avaliadas e o período de alta/baixa precipitação não foram observadas. A espécie apresentou hábito alimentar insetívoro, e sua dieta no riacho estudado foi composta por itens autóctones (principalmente insetos imaturos aquáticos) e alóctones (principalmente fragmentos de insetos).

Population structure and reproduction of Deuterodon langei travassos, 1957 (Teleostei, Characidae) in a neotropical stream basin from the Atlantic Forest, Southern Brazil

Aspects of the biology of D. langei were studied at different sites along a longitudinal gradient formed by the Ribeirão stream basin, a Neotropical stream of the Atlantic Forest, southern Brazil. Differences were observed in population structure and reproduction along the longitudinal gradient and during the study period. Juvenile fishes occurred in high abundance, mainly in the downstream site after the rainy months. Adults occurred mainly in the intermediate and upstream sites. During their life cycle, adults optimise their reproductive strategy by concentrating the reproductive period with total spawn in a short time interval before summer rains dragged the juvenile, larval forms and/or eggs downstream. The downstream site was characterized by a wide range of microhabitats (ex. submerged grass and shallow flooded area). Thus, the species used different portions of the basin in distinct stages of its life, being ecologically adapted to variation patterns in its temporal and physical environments.

Aspectos da biologia de D. langei foram estudados em diferentes locais da bacia do rio Ribeirão, um riacho litorâneo da Floresta Atlântica do sudeste do Brasil. Foram observadas diferenças na estrutura da população e na reprodução, ao longo do gradiente longitudinal da bacia e do período de estudo. Os peixes juvenis ocorreram em grande abundância, principalmente no trecho a jusante da bacia, após os meses mais chuvosos. Adultos ocorreram principalmente nos trechos intermediários e a montante. Não houve diferença significativa na relação sexual entre os locais amostrados, estações do ano, meses e classes de comprimento. O comprimento médio de primeira maturação (L50) foi o mesmo para machos e fêmeas, entre 6,1 e 7,0 cm de comprimento total (Lt). O período reprodutivo foi curto (entre o final da primavera e início do verão), antes dos meses mais chuvosos, com desova total. O Índice de Atividade Reprodutiva (IAR) indicou que D. langei reproduz em toda a bacia, porém a atividade reprodutiva é mais intensa nos trechos mais a montante da bacia. O período chuvoso e as chuvas torrenciais se mostraram fatores abióticos muito importantes para a dinâmica da população. Durante seu ciclo de vida os adultos maximizam sua estratégia reprodutiva concentrando o período reprodutivo, com desova total em um curto espaço de tempo antes das chuvas de verão que carregam juvenis, formas larvais e/ou ovos para as regiões a jusante onde existe uma ampla quantidade de micro-ambientes (gramíneas submersas e áreas rasas e calmas). Desta forma a espécie estudada utilizou diferentes porções da bacia em distintos estágios de seu ciclo de vida, demonstrando estar ecologicamente adaptada às variações temporais e físicas do ambiente.