Overexpression of REDUCED WALL ACETYLATION C increases xylan acetylation and biomass recalcitrance in Populus.

Plant lignocellulosic biomass, i.e. secondary cell walls of plants, is a vital alternative source for bioenergy. However, the acetylation of xylan in secondary cell walls impedes the conversion of biomass to biofuels. Previous studies have shown that REDUCED WALL ACETYLATION (RWA) proteins are directly involved in the acetylation of xylan but the regulatory mechanism of RWAs is not fully understood. In this study, we demonstrate that overexpression of a Populus trichocarpa PtRWA-C gene increases the level of xylan acetylation and increases the lignin content and S/G ratio, ultimately yielding poplar woody biomass with reduced saccharification efficiency. Furthermore, through gene coexpression network and expression quantitative trait loci (eQTL) analysis, we found that PtRWA-C was regulated not only by the secondary cell wall hierarchical regulatory network but also by an AP2 family transcription factor HARDY (HRD). Specifically, HRD activates PtRWA-C expression by directly binding to the PtRWA-C promoter, which is also the cis-eQTL for PtRWA-C. Taken together, our findings provide insights into the functional roles of PtRWA-C in xylan acetylation and consequently saccharification and shed light on synthetic biology approaches to manipulate this gene and alter cell wall properties. These findings have substantial implications for genetic engineering of woody species, which could be used as a sustainable source of biofuels, valuable biochemicals, and biomaterials.

Insights into cryptochrome modulation of ABA signaling to mediate dormancy regulation in Marchantia polymorpha.

The acquisition of dormancy capabilities has enabled plants to survive in adverse terrestrial environmental conditions. Dormancy accumulation and release is coupled with light signaling, which is well studied in Arabidopsis, but it is unclear in the distant nonvascular relative. We study the characteristics and function on dormancy regulation of a blue light receptor cryptochrome in Marchantia polymorpha (MpCRY). Here, we identified MpCRY via bioinformatics and mutant complement analysis. The biochemical characteristics were assessed by multiple protein-binding assays. The function of MpCRY in gemma dormancy was clarified by overexpression and mutation of MpCRY, and its mechanism was analyzed via RNA sequencing and quantitative PCR analyses associated with hormone treatment. We found that the unique MpCRY protein in M. polymorpha undergoes both blue light-promoted interaction with itself (self-interaction) and blue light-dependent phosphorylation. MpCRY has the specific characteristics of blue light-induced nuclear localization and degradation. We further demonstrated that MpCRY transcriptionally represses abscisic acid (ABA) signaling-related gene expression to suppress gemma dormancy, which is dependent on blue light signaling. Our findings indicate that MpCRY possesses specific biochemical and molecular characteristics, and modulates ABA signaling under blue light conditions to regulate gemma dormancy in M. polymorpha.

Peroxisome-Mediated Reactive Oxygen Species Signals Modulate Programmed Cell Death in Plants.

Peroxisomes are a class of simple organelles that play an important role in plant reactive oxygen species (ROS) metabolism. Experimental evidence reveals the involvement of ROS in programmed cell death (PCD) in plants. Plant PCD is crucial for the regulation of plant growth, development and environmental stress resistance. However, it is unclear whether the ROS originated from peroxisomes participated in cellular PCD. Enzymes involved in the peroxisomal ROS metabolic pathways are key mediators to figure out the relationship between peroxisome-derived ROS and PCD. Here, we summarize the peroxisomal ROS generation and scavenging pathways and explain how peroxisome-derived ROS participate in PCD based on recent progress in the functional study of enzymes related to peroxisomal ROS generation or scavenging. We aimed to elucidate the role of the peroxisomal ROS regulatory system in cellular PCD to show its potential in terms of accurate PCD regulation, which contribute to environmental stress resistance.

Genome-wide identification, evolution and expression analysis of the aspartic protease gene family during rapid growth of moso bamboo (Phyllostachys edulis) shoots.

BACKGROUND: Aspartic proteases (APs) are a class of aspartic peptidases belonging to nine proteolytic enzyme families whose members are widely distributed in biological organisms. APs play essential functions during plant development and environmental adaptation. However, there are few reports about APs in fast-growing moso bamboo. RESULT: In this study, we identified a total of 129 AP proteins (PhAPs) encoded by the moso bamboo genome. Phylogenetic and gene structure analyses showed that these 129 PhAPs could be divided into three categories (categories A, B and C). The PhAP gene family in moso bamboo may have undergone gene expansion, especially the members of categories A and B, although homologs of some members in category C have been lost. The chromosomal location of PhAPs suggested that segmental and tandem duplication events were critical for PhAP gene expansion. Promoter analysis revealed that PhAPs in moso bamboo may be involved in plant development and responses to environmental stress. Furthermore, PhAPs showed tissue-specific expression patterns and may play important roles in rapid growth, including programmed cell death, cell division and elongation, by integrating environmental signals such as light and gibberellin signals. CONCLUSION: Comprehensive analysis of the AP gene family in moso bamboo suggests that PhAPs have experienced gene expansion that is distinct from that in rice and may play an important role in moso bamboo organ development and rapid growth. Our results provide a direction and lay a foundation for further analysis of plant AP genes to clarify their function during rapid growth.

Comparative analysis of PLATZ transcription factors in six poplar species and analysis of the role of PtrPLATZ14 in leaf development.

Plant AT-rich sequence and zinc-binding (PLATZ) proteins are a class of plant-specific transcription factor that play a crucial role in plant growth, development, and stress response. However, the evolutionary relationship of the PLATZ gene family across the Populus genus and the biological functions of the PLATZ protein require further investigation. In this study, we identified 133 PLATZ genes from six Populus species belonging to four Populus sections. Synteny analysis of the PLATZ gene family indicated that whole genome duplication events contributed to the expansion of the PLATZ family. Among the nine paralogous pairs, the protein structure of PtrPLATZ14/18 pair exhibited significant differences with others. Through gene expression patterns and co-expression networks, we discovered divergent expression patterns and sub-networks, and found that the members of pair PtrPLATZ14/18 might play different roles in the regulation of macromolecule biosynthesis and modification. Furthermore, we found that PtrPLATZ14 regulates poplar leaf development by affecting cell size control genes PtrGRF/GIF and PtrTCP. In conclusion, our study provides a theoretical foundation for exploring the evolution relationships and functions of the PLATZ gene family within Populus species and provides insights into the function and potential mechanism of PtrPLATZ14 in leaf morphology that were diverse across the Populus genus.

Synthesis and properties of ZnS quantum dots by an oil-water interface method.

Nowadays, novel synthesis routes of nanoparticles are attracting a considerable attention of relative scientists. In this work, monodispersed spherical ZnS quantum dots (QDs) were synthesized by an oil-water interface method. The as-prepared products were characterized by X-ray diffraction (XRD), transmission electron microscopy (TEM), and high-resolution transmission electron microscopy (HRTEM). Typical TEM images showed that the average size of ZnS QDs was 3.3 nm. The ZnS QDs with the largest yield and UV absorbance were obtained with the mole ratio of [S2-]/[Zn2+] = 1.2/1.0 at 100 degrees C. Based on the above results and the previous outstanding work for synthesis of monodispersed inorganic nanoparticles, the formation mechanism of the monodispersed ZnS quantum dots was proposed. Additionally, UV-vis absorption and photoluminescence (PL) spectra for Mn2+ and Eu3+ doped ZnS QDs were used to investigate their optical properties. Effects of Mn2+ and Eu3+ doping ratio on their optical properties were studied. The optimized doping ratio of Mn2+ and Eu3+ was 4.0 mol.% and 5.0 mol.%, respectively.

In-situ polymerization approach for preparation of rare earth fluoride phosphors coated with PAA.

Up-conversion nanoparticles (UCNPs), which can convert a radiation from a longer wavelength to a shorter wavelength, have great potential uses as bio-labels in biological detection. However, these NPs usually cannot be used directly unless their surfaces are further modified. In this paper, NaYF4:Yb, Er nanoparticles (NPs) were coated with poly(acrylic acid) (PAA) by in situ polymerization for the first time. Accordingly, NaYF4:Yb, Er/NaYF4 NPs were synthesized before PAA coating to avoid the decay of optical intensity. The resulting UCNPs were characterized by X-ray diffraction (XRD), transmission electron microscope (TEM), Fourier transform infrared spectroscopy (FT-IR), thermogravimetric analysis (TGA), and up-conversion photoluminescence spectrometry. The XRD results indicated that the resultant UCNPs exhibited a pure hexagonal phase. The FT-IR spectra and TGA curves revealed that these NPs were coated successfully with PAA. Meanwhile, the TEM results showed that well-dispersed UCNPs with the best morphology and an average size of about 90 nm were obtained with 8.0 wt% acrylic acid content (the content percentage in the whole reaction system) at 0 degrees C within 130 min. Fluorescence tests showed that the UCNPs had a strong UC fluorescence intensity. Settlement tests revealed that PAA-coated NaYF4 UCNPs had more favorable dispersion stability than uncoated UCNPs in an aqueous system. These functionalized nanocomposites could be used for further bio-conjugation.

Transcriptional Regulation and Signaling of Developmental Programmed Cell Death in Plants.

Developmental programmed cell death (dPCD) has multiple functions in plant growth and development, and is of great value for industrial production. Among them, wood formed by xylem dPCD is one of the most widely used natural materials. Therefore, it is crucial to explore the molecular mechanism of plant dPCD. The dPCD process is tightly regulated by genetic networks and is involved in the transduction of signaling molecules. Several key regulators have been identified in diverse organisms and individual PCD events. However, complex molecular networks controlling plant dPCD remain highly elusive, and the original triggers of this process are still unknown. This review summarizes the recent progress on the transcriptional regulation and signaling of dPCD during vegetative and reproductive development. It is hoped that this review will provide an overall view of the molecular regulation of dPCD in different developmental processes in plants and identify specific mechanisms for regulating these dPCD events. In addition, the application of plants in industrial production can be improved by manipulating dPCD in specific processes, such as xylogenesis.

Formation and luminescence of sodium rare earth fluoride nanocrystals in the presence of chelators.

The single crystal structure of sodium yttrium fluoride (NaYF4) nanoparticles formed mainly by aggregation in aqueous phase was first confirmed by high resolution transmission electron microscope (HRTEM). Then, effects of reactant concentrations and pH on the formation of NaYF4 nanocrystals were investigated and described in the presence of sodium citrate (Na-citrate). The results showed that the non-aggregation formation of NaYF4 was dominant under a low concentration range of reactants, and the aggregation formation was dominant under a high concentration range of reactants. For comparison, NaYF4 nanocrystals were also synthesized by co-precipitation in the presence of various other chelators, not only amino-carboxyl (H2N-C) types involving (Na-EDTA) and sodium nitrilotriacetate (Na-NTA) but also hydroxyl-carboxyl (HO-C) types including sodium citrate (Na-citrate), sodium malate (Na-malate), and potassium sodium tartrate (K, Na-tartate). All the chelators showed a similar influence on the particle formation. However, the size of the final product was different corresponding to the different chelators. An upconversion fluorescent material, cubic NaYF4 nanocrystal co-doped with ytterbium and erbium with diameter about 10 nm was successfully achieved at room temperature. Under 980 nm laser excitation, the red emissions at 652 and 679 nm were much stronger than green emissions at 520 and 541 nm. Additionally, effects of concentrations of the different chelators on the fluorescent properties of the formed NaYF4:Yb, Er nanocrystals were also investigated. Different chelators affected the fluorescent properties differently, according to their respective physical and chemical properties.

Genetic polymorphisms of CYP2C19 2 and ABCB1 C3435T affect the pharmacokinetic and pharmacodynamic responses to clopidogrel in 401 patients with acute coronary syndrome.

BACKGROUNDS AND OBJECTIVES: Clopidogrel, an inhibitor of platelet ADP P2Y12 receptors, plays an important role in the prevention of stent thrombosis. However, some patients do not attain adequate antiplatelet effects. Studies have shown that the genetic variation in CYP2C19*2 is associated with an impaired response to clopidogrel. This study was designed to investigate the genetic variants of 21 genes involving in the absorption, metabolism, and pharmacodynamics of clopidogrel. The effects of these genes on the plasma level of clopidogrel and its metabolites (active clopi-H4 and inactive CLPM) and platelet reactivity were also studied. METHODS AND RESULTS: 401 acute coronary syndrome (ACS) patients received either a 300 mg loading dose following 75 mg maintenance dose daily or a 75mg maintenance dose daily of clopidogrel. The inhibition of platelets was assessed using light transmittance aggregometry. Plasma concentrations of clopidogrel as well as its active (clopi-H4) and inactive (CLPM) metabolites were measured using HPLC-MS-MS method. Among 21 genes, the carriers of CYP2C19*2 were associated with lower exposure to its active (clopi-H4) and inactive (CLPM) metabolites (both P<0.05 vs. non-carriers) and thus decreased platelet inhibition (P<0.05 vs. non-carriers). Notably, the carriers of ABCB1 C3435T were associated with lower levels of plasma clopidogrel and its active (clopi-H4) and inactive (CLPM) metabolites (all P<0.05 vs. non-carriers) which also correlated with subsequently decreased platelet inhibition (P<0.05 vs. non-carriers). There were no obvious effects of other studied genes on clopidogrel. CONCLUSIONS: CYP2C19*2 is a determinant for the formation of the active metabolite of clopidogrel and its antiplatelet effects. Meanwhile, ABCB1 C3435T plays an important role in intestinal absorption of clopidogrel which further affects the exposure to the active metabolite of clopidogrel and platelet aggregation.

Synthesis of silver dendritic nanostructures protected by tetrathiafulvalene.

Silver dendritic nanostructures protected by tetrathiafulvalene (TTF) were synthesized via reduction of silver ions with TTF in acetonitrile.

Synthesis of organic-metal hybrid nanowires by cooperative self-organization of tetrathiafulvalene and metallic gold via charge-transfer.

Organic-metal hybrid nanowires were synthesized by cooperative self-organization of the one-dimensional stacking of tetrathiafulvalene (TTF) via charge-transfer interaction with metallic gold originating from the redox reaction between TTF and gold ions. The nanowires can be easily obtained as purple precipitates just by mixing TTF and HAuCl4 in a CH3CN solution at room temperature. The feed molar ratio of TTF to HAuCl4 was 4.4. The average diameter and length of the observed nanowires were 90 +/- 36 nm and 15 +/- 3 microm, respectively. The formation was facilitated by the arrangement of the neutral and oxidized TTF along the one direction in a mix-valence state, which was confirmed by a broad absorption that appeared in the region of 2000 nm and the composition of the nanowires of [(TTFCl(0.78))Au(0.12)].

Microporous nanocomposites of Pd and Au nanoparticles via hierarchical self-assembly.

Microporous nanocomposites of Pd and Au nanoparticles were generated by utilizing electrostatic interaction between oppositely charged Au nanoparticles coated with carboxylate groups (Au-COO-) and spherical aggregates of Pd nanoparticles (Pd- NH3+) with a mean diameter of 80+/-20 nm stabilized and cross linked by octa(aminopropyl)silsesquioxane octahydrochloride (POSS-NH3+). Amide bonds were formed between the reactive ion couples that are well defined in the Pd-Au colloidal nanocomposites during a subsequent chemical reaction to generate more stable nanocomposites with improved chemical and physical properties.