Accounting for the Lombard effect in estimating the probability of detection in passive acoustic surveys: Applications for single sensor mitigation and monitoring.

The detection range of calling animals is commonly described by the passive sonar equations. However, the sonar equations do not account for interactions between source and ambient sound level, i.e., the Lombard effect. This behavior has the potential to introduce non-linearities into the sonar equations and result in incorrectly predicted detection ranges. Here, we investigate the relationship between ambient sound and effective detection ranges for North Atlantic right whales (Eubalaena glacialis) in Cape Cod Bay, MA, USA using a sparse array of acoustic recorders. Generalized estimating equations were used to model the probability that a call was detected as a function of distance between the calling animal and the sensor and the ambient sound level. The model suggests a non-linear relationship between ambient sound levels and the probability of detecting a call. Comparing the non-linear model to the linearized version of the same model resulted in 12 to 25% increases in the effective detection range. We also found evidence of the Lombard effect suggesting that it is the most plausible cause for the non-linearity in the relationship. Finally, we suggest a simple modification to the sonar equation for estimating detection probability for single sensor monitoring applications.

The significance of respiration timing in the energetics estimates of free-ranging killer whales (Orcinus orca).

Respiration rate has been used as an indicator of metabolic rate and associated cost of transport (COT) of free-ranging cetaceans, discounting potential respiration-by-respiration variation in O2 uptake. To investigate the influence of respiration timing on O2 uptake, we developed a dynamic model of O2 exchange and storage. Individual respiration events were revealed from kinematic data from 10 adult Norwegian herring-feeding killer whales (Orcinus orca) recorded with high-resolution tags (DTAGs). We compared fixed O2 uptake per respiration models with O2 uptake per respiration estimated through a simple 'broken-stick' O2-uptake function, in which O2 uptake was assumed to be the maximum possible O2 uptake when stores are depleted or maximum total body O2 store minus existing O2 store when stores are close to saturated. In contrast to findings assuming fixed O2 uptake per respiration, uptake from the broken-stick model yielded a high correlation (r(2)>0.9) between O2 uptake and activity level. Moreover, we found that respiration intervals increased and became less variable at higher swimming speeds, possibly to increase O2 uptake efficiency per respiration. As found in previous studies, COT decreased monotonically versus speed using the fixed O2 uptake per respiration models. However, the broken-stick uptake model yielded a curvilinear COT curve with a clear minimum at typical swimming speeds of 1.7-2.4 m s(-1) Our results showed that respiration-by-respiration variation in O2 uptake is expected to be significant. And though O2 consumption measurements of COT for free-ranging cetaceans remain impractical, accounting for the influence of respiration timing on O2 uptake will lead to more consistent predictions of field metabolic rates than using respiration rate alone.

Altruistic defence behaviours in aphids.

BACKGROUND: Altruistic anti-predatory behaviours pose an evolutionary problem because they are costly to the actor and beneficial to the recipients. Altruistic behaviours can evolve through indirect fitness benefits when directed toward kin. The altruistic nature of anti-predatory behaviours is often difficult to establish because the actor can obtain direct fitness benefits, or the behaviour could result from selfish coercion by others, especially in eusocial animals. Non-eusocial parthenogenetically reproducing aphids form colonies of clone-mates, which are ideal to test the altruistic nature of anti-predatory defence behaviours. Many aphids release cornicle secretions when attacked by natural enemies such as parasitoids. These secretions contain an alarm pheromone that alerts neighbours (clone-mates) of danger, thereby providing indirect fitness benefits to the actor. However, contact with cornicle secretions also hampers an attacker and could provide direct fitness to the actor. RESULTS: We tested the hypothesis that cornicle secretions are altruistic by assessing direct and indirect fitness consequences of smearing cornicle secretions onto an attacker, and by manipulating the number of clone-mates that could benefit from the behaviour. We observed parasitoids, Aphidius rhopalosiphi, foraging singly in patches of the cereal aphid Sitobion avenae of varied patch size (2, 6, and 12 aphids). Aphids that smeared parasitoids did not benefit from a reduced probability of parasitism, or increase the parasitoids' handling time. Smeared parasitoids, however, spent proportionately more time grooming and less time foraging, which resulted in a decreased host-encounter and oviposition rate within the host patch. In addition, individual smearing rate increased with the number of clone-mates in the colony. CONCLUSIONS: Cornicle secretions of aphids were altruistic against parasitoids, as they provided no direct fitness benefits to secretion-releasing individuals, only indirect fitness benefits through neighbouring clone-mates. Moreover, the use of cornicle secretions was consistent with their altruistic nature, because the occurrence of this behaviour increased with the size of indirect fitness benefits, the number of clone-mates that can benefit. This study provides evidence for a case of kin-directed altruistic defence outside eusocial animals.

Biofouling, metal sorption and aggregation are related to sinking of microplastics in a stratified reservoir.

Microplastic particles entering aquatic systems are rapidly colonized by microbial biofilms. The presence of microbial biomass may cause sinking of particles and as a consequence prevent their transport to the oceans. We studied microbial colonization of different polymer particles exposed in the epi-, meta- and hypolimnion of a freshwater reservoir during late summer for 47 days. Parameters measured included biofilm formation, metal sorption and sinking velocities. Microbial biofilms contained bacteria, cyanobacteria and algae as well as inorganic particles such as iron oxides. Regardless of biofilm thickness and biovolumes of different biofilm constituents, single polyethylene (PE) particles stayed buoyant, whereas the sinking velocity of single polystyrene (PS) and polyethylene terephthalate (PET) particles did not change significantly compared to initial values. During exposition, a mixing event occurred, by which anoxic, iron-rich water from the hypolimnion was mixed with water from upper layers. This induced aggregation and sinking of hypolimnetic PE particles together with organic matter, cyanobacteria colonies and iron minerals.

Vertical flow constructed wetlands for decentralized wastewater treatment in Jordan: Optimization of total nitrogen removal.

The baseline performance of two full-scale vertical flow (VF) constructed wetlands operating in the arid climate of Jordan is presented in this study, within the context of the Jordanian Standards for reuse of treated wastewater. One system was a recirculating VF wetland, and the other was a single-pass two-stage VF wetland. Operational modifications were made to each treatment system, with the aim of improving Total Nitrogen (TN) removal. For the recirculating VF system, attached-growth media was added to the recirculation tank to provide increased surface area for growth of denitrifying bacteria. The modification showed a small but significant improvement in TN removal (8 mg/L less than the baseline phase; p = 0.004). Statistical analysis showed that 30% and 4.5% of the increase in compliance with the TN limits (Class A and Class B/C, respectively) could be attributed to the modification. The two-stage VF wetland was modified with a step-feeding line that introduced carbon-rich raw wastewater to the intermediate pump shaft just upstream of the second-stage filter. The modification also resulted in a small but significant improvement in TN removal (13 mg/L less than the baseline phase; p = 0.005). The increase in compliance with the TN standard due to the modification was estimated at 20% and 22% for Class A and B/C, respectively. The simple operational modifications proved to be effective for improving total nitrogen removal in arid climate VF wetland systems.

Map and model-moving from observation to prediction in toxicogenomics.

BACKGROUND: Chemicals induce compound-specific changes in the transcriptome of an organism (toxicogenomic fingerprints). This provides potential insights about the cellular or physiological responses to chemical exposure and adverse effects, which is needed in assessment of chemical-related hazards or environmental health. In this regard, comparison or connection of different experiments becomes important when interpreting toxicogenomic experiments. Owing to lack of capturing response dynamics, comparability is often limited. In this study, we aim to overcome these constraints. RESULTS: We developed an experimental design and bioinformatic analysis strategy to infer time- and concentration-resolved toxicogenomic fingerprints. We projected the fingerprints to a universal coordinate system (toxicogenomic universe) based on a self-organizing map of toxicogenomic data retrieved from public databases. Genes clustering together in regions of the map indicate functional relation due to co-expression under chemical exposure. To allow for quantitative description and extrapolation of the gene expression responses we developed a time- and concentration-dependent regression model. We applied the analysis strategy in a microarray case study exposing zebrafish embryos to 3 selected model compounds including 2 cyclooxygenase inhibitors. After identification of key responses in the transcriptome we could compare and characterize their association to developmental, toxicokinetic, and toxicodynamic processes using the parameter estimates for affected gene clusters. Furthermore, we discuss an association of toxicogenomic effects with measured internal concentrations. CONCLUSIONS: The design and analysis pipeline described here could serve as a blueprint for creating comparable toxicogenomic fingerprints of chemicals. It integrates, aggregates, and models time- and concentration-resolved toxicogenomic data.

Can a gray seal (Halichoerus grypus) generalize call classes?

Past researchers have found that gray seals (Halichoerus grypus) are capable of classifying vocal signals by call type using a trained set, but were unable to generalize to novel exemplars (Shapiro, Slater, & Janik, 2004). Given the importance of auditory categorization in communication, it would be surprising if the animals were unable to generalize acoustically similar calls into classes. Here, we trained a juvenile gray seal to discriminate novel calls into 2 classes, "growls" and "moans," by vocally matching call types (i.e., the seal moaned when played a moan and growled when played a growl). Our method differed from the previous study as we trained the animal using a comparatively large set of exemplars with standardized durations, consisting of both the seal's own calls and those of 2 other seals. The seal successfully discriminated growls and moans for both her own (94% correct choices) and the other seals' (87% correct choices) calls. We used a generalized linear model (GLM) and found that the seal's performance significantly improved across test sessions, and that accuracy was higher during the first presentation of a sound from her own repertoire but decreased after multiple exposures. This pattern was not found for calls from unknown seals. Factor analysis for mixed data (FAMD) identified acoustic parameters that could be used to discriminate between call types and individuals. Growls and moans differed in noise, duration and frequency parameters, whereas individuals differed only in frequency. These data suggest that the seal could have gained information about both call type and caller identity using frequency cues.

Testing competing measures of profitability for mobile resources.

Optimal diet theory often fails to predict a forager's diet choice when prey are mobile. Because they escape or defend themselves, mobile prey are likely to increase the forager's handling time, thereby decreasing its fitness gain rate. Many animals have been shown to select their prey so as to maximize either their fitness gain or their fitness gain rate. However, no study has yet compared directly these two measures of profitability by generating testable predictions about the choice of the forager. Under laboratory conditions, we compared these two measures of profitability, using the aphid parasitoid Aphidius colemani and its host, Myzus persicae. Fitness gain was calculated for parasitoids developing in each host instar by measuring life-history traits such as developmental time, sex ratio and fecundity. Fitness gain rate was estimated by dividing fitness gain by handling time, the time required to subdue the host. Fourth instar aphids provided the best fitness gain to parasitoids, whereas second instar aphids were the most profitable in terms of fitness gain rate. Host choice tests showed that A. colemani females preferred second instar hosts, suggesting that their decision maximizes fitness gain rate over fitness gain. Our results indicate that fitness gain rate is a reliable predictor of animal's choice for foragers exploiting resources that impose additional time cost due to their mobility.