Template-independent synthesis and 3'-end labelling of 2'-modified oligonucleotides with terminal deoxynucleotidyl transferases.

Xenobiotic nucleic acids (XNAs) are artificial genetic polymers with altered structural moieties and useful features, such as enhanced biological and chemical stability. Enzymatic synthesis and efficient labelling of XNAs are crucial for their broader application. Terminal deoxynucleotidyl transferases (TdTs) have been exploited for the de novo synthesis and labelling of DNA and demonstrated the capability of recognizing various substrates. However, the activities of TdTs for the synthesis and labelling of commonly used XNAs with 2' modifications have not been systematically explored. In this work, we explored and demonstrated the varied activities of three TdTs (bovine TdT, MTdT-evo and murine TdT) for the template-independent incorporation of 2'-methoxy NTPs, 2'-fluoro NTPs and 2'-fluoroarabino NTPs into the 3' ends of single- and double-stranded DNAs and the extension of 2'-modified XNAs with (d)NTPs containing a natural or unnatural nucleobase. Taking advantages of these activities, we established a strategy for protecting single-stranded DNAs from exonuclease I degradation by TdT-synthesized 2'-modified XNA tails and methods for 3'-end labelling of 2'-modified XNAs by TdT-mediated synthesis of G-quadruplex-containing tails or incorporation of nucleotides with a functionalized nucleobase. A DNA-2'-fluoroarabino nucleic acid (FANA) chimeric hydrogel was also successfully constructed based on the extraordinary activity of MTdT-evo for template-independent FANA synthesis.

Thermophilic Nucleic Acid Polymerases and Their Application in Xenobiology.

Thermophilic nucleic acid polymerases, isolated from organisms that thrive in extremely hot environments, possess great DNA/RNA synthesis activities under high temperatures. These enzymes play indispensable roles in central life activities involved in DNA replication and repair, as well as RNA transcription, and have already been widely used in bioengineering, biotechnology, and biomedicine. Xeno nucleic acids (XNAs), which are analogs of DNA/RNA with unnatural moieties, have been developed as new carriers of genetic information in the past decades, which contributed to the fast development of a field called xenobiology. The broad application of these XNA molecules in the production of novel drugs, materials, and catalysts greatly relies on the capability of enzymatic synthesis, reverse transcription, and amplification of them, which have been partially achieved with natural or artificially tailored thermophilic nucleic acid polymerases. In this review, we first systematically summarize representative thermophilic and hyperthermophilic polymerases that have been extensively studied and utilized, followed by the introduction of methods and approaches in the engineering of these polymerases for the efficient synthesis, reverse transcription, and amplification of XNAs. The application of XNAs facilitated by these polymerases and their mutants is then discussed. In the end, a perspective for the future direction of further development and application of unnatural nucleic acid polymerases is provided.

An Automatic and Novel SAR Image Registration Algorithm: A Case Study of the Chinese GF-3 Satellite.

The Chinese GF-3 satellite launched in August 2016 is a Synthetic Aperture Radar (SAR) satellite that has the largest number of imaging modes in the world. It achieves a free switch in the spotlight, stripmap, scanSAR, wave, global observation and other imaging modes. In order to further utilize GF-3 SAR images, an automatic and fast image registration procedure needs to be done. In this paper, we propose a novel image registration technique for GF-3 images of different imaging modes. The proposed algorithm consists of two stages: coarse registration and fine registration. In the first stage, we combine an adaptive sampling method with the SAR-SIFT algorithm to efficiently eliminate obvious translation, rotation and scale differences between the reference and sensed images. In the second stage, uniformly-distributed control points are extracted, then the fast normalized cross-correlation of an improved phase congruency model is utilized as a new similarity metric to match the reference image and the coarse-registered image in a local search region. Moreover, a selection strategy is used to remove outliers. Experimental results on several GF-3 SAR images of different imaging modes show that the proposed algorithm gives a robust, efficient and precise registration performance, compared with other state-of-the-art algorithms for SAR image registration.

Flood Detection in Gaofen-3 SAR Images via Fully Convolutional Networks.

Emergency flood monitoring and rescue need to first detect flood areas. This paper provides a fast and novel flood detection method and applies it to Gaofen-3 SAR images. The fully convolutional network (FCN), a variant of VGG16, is utilized for flood mapping in this paper. Considering the requirement of flood detection, we fine-tune the model to get higher accuracy results with shorter training time and fewer training samples. Compared with state-of-the-art methods, our proposed algorithm not only gives robust and accurate detection results but also significantly reduces the detection time.

3D Bioprinting of Artificial Skin Substitute with Improved Mechanical Property and Regulated Cell Behavior through Integrating Patterned Nanofibrous Films.

Three-dimensional (3D) bioprinting has advantages for constructing artificial skin tissues in replicating the structures and functions of native skin. Although many studies have presented improved effect of printing skin substitutes in wound healing, using hydrogel inks to fabricate 3D bioprinting architectures with complicated structures, mimicking mechanical properties, and appropriate cellular environments is still challenging. Inspired by collagen nanofibers withstanding stress and regulating cell behavior, a patterned nanofibrous film was introduced to the printed hydrogel scaffold to fabricate a composite artificial skin substitute (CASS). The artificial dermis was printed using gelatin-hyaluronan hybrid hydrogels containing human dermal fibroblasts with gradient porosity and integrated with patterned nanofibrous films simultaneously, while the artificial epidermis was formed by seeding human keratinocytes upon the dermis. The collagen-mimicking nanofibrous film effectively improved the tensile strength and fracture resistance of the CASS, making it sewable for firm implantation into skin defects. Meanwhile, the patterned nanofibrous film also provided the biological cues to guide cell behavior. Consequently, CASS could effectively accelerate the regeneration of large-area skin defects in mouse and pig models by promoting re-epithelialization and collagen deposition. This research developed an effective strategy to prepare composite bioprinting architectures for enhancing mechanical property and regulating cell behavior, and CASS could be a promising skin substitute for treating large-area skin defects.