Detalhe da pesquisa
1.
Navigating bottlenecks and trade-offs in genomic data analysis.
Nat Rev Genet
; 24(4): 235-250, 2023 04.
Artigo
Inglês
| MEDLINE | ID: mdl-36476810
2.
Proving sequence aligners can guarantee accuracy in almost O(m log n) time through an average-case analysis of the seed-chain-extend heuristic.
Genome Res
; 33(7): 1175-1187, 2023 07.
Artigo
Inglês
| MEDLINE | ID: mdl-36990779
3.
Fast and robust metagenomic sequence comparison through sparse chaining with skani.
Nat Methods
; 20(11): 1661-1665, 2023 Nov.
Artigo
Inglês
| MEDLINE | ID: mdl-37735570
4.
Mora: abundance aware metagenomic read re-assignment for disentangling similar strains.
BMC Bioinformatics
; 25(1): 161, 2024 Apr 23.
Artigo
Inglês
| MEDLINE | ID: mdl-38649836
5.
Image-centric compression of protein structures improves space savings.
BMC Bioinformatics
; 24(1): 437, 2023 Nov 21.
Artigo
Inglês
| MEDLINE | ID: mdl-37990290
6.
Theory of local k-mer selection with applications to long-read alignment.
Bioinformatics
; 38(20): 4659-4669, 2022 10 14.
Artigo
Inglês
| MEDLINE | ID: mdl-36124869
7.
Expected 10-anonymity of HyperLogLog sketches for federated queries of clinical data repositories.
Bioinformatics
; 37(Suppl_1): i151-i160, 2021 07 12.
Artigo
Inglês
| MEDLINE | ID: mdl-34252969
8.
HyperMinHash: MinHash in LogLog space.
IEEE Trans Knowl Data Eng
; 34(1): 328-339, 2022 Jan.
Artigo
Inglês
| MEDLINE | ID: mdl-38288326
9.
Levenshtein Distance, Sequence Comparison and Biological Database Search.
IEEE Trans Inf Theory
; 67(6): 3287-3294, 2021 Jun.
Artigo
Inglês
| MEDLINE | ID: mdl-34257466
10.
Metagenomic binning through low-density hashing.
Bioinformatics
; 35(2): 219-226, 2019 01 15.
Artigo
Inglês
| MEDLINE | ID: mdl-30010790
11.
Balancing Accuracy and Privacy in Federated Queries of Clinical Data Repositories: Algorithm Development and Validation.
J Med Internet Res
; 22(11): e18735, 2020 11 03.
Artigo
Inglês
| MEDLINE | ID: mdl-33141090
12.
On Minimizers and Convolutional Filters: Theoretical Connections and Applications to Genome Analysis.
J Comput Biol
; 31(5): 381-395, 2024 05.
Artigo
Inglês
| MEDLINE | ID: mdl-38687333
13.
flopp: Extremely Fast Long-Read Polyploid Haplotype Phasing by Uniform Tree Partitioning.
J Comput Biol
; 29(2): 195-211, 2022 02.
Artigo
Inglês
| MEDLINE | ID: mdl-35041529
14.
Inherent privacy limitations of decentralized contact tracing apps.
J Am Med Inform Assoc
; 28(1): 193-195, 2021 01 15.
Artigo
Inglês
| MEDLINE | ID: mdl-32584990
15.
Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads.
Genome Biol
; 21(1): 47, 2020 02 24.
Artigo
Inglês
| MEDLINE | ID: mdl-32093762
16.
Joker de Bruijn: Covering k-Mers Using Joker Characters.
J Comput Biol
; 25(11): 1171-1178, 2018 11.
Artigo
Inglês
| MEDLINE | ID: mdl-30117747
17.
The need for privacy with public digital contact tracing during the COVID-19 pandemic.
Lancet Digit Health
; 2(7): e342-e344, 2020 07.
Artigo
Inglês
| MEDLINE | ID: mdl-32835192
18.
Compressive mapping for next-generation sequencing.
Nat Biotechnol
; 34(4): 374-6, 2016 Apr.
Artigo
Inglês
| MEDLINE | ID: mdl-27054987