Detalhe da pesquisa
1.
RNA three-dimensional structure drives the sequence organization of potato spindle tuber viroid quasispecies.
PLoS Pathog
; 20(4): e1012142, 2024 Apr.
Artigo
Inglês
| MEDLINE | ID: mdl-38574111
2.
The Nucleic Acid Knowledgebase: a new portal for 3D structural information about nucleic acids.
Nucleic Acids Res
; 52(D1): D245-D254, 2024 Jan 05.
Artigo
Inglês
| MEDLINE | ID: mdl-37953312
3.
Anionic Gâ¢U pairs in bacterial ribosomal rRNAs.
RNA
; 29(7): 1069-1076, 2023 07.
Artigo
Inglês
| MEDLINE | ID: mdl-37068913
4.
Correction: A three-dimensional RNA motif mediates directional trafficking of Potato spindle tuber viroid from epidermal to palisade mesophyll cells in Nicotiana benthamiana.
PLoS Pathog
; 18(3): e1010421, 2022 Mar.
Artigo
Inglês
| MEDLINE | ID: mdl-35316309
6.
Seriation Using Tree-penalized Path Length.
Eur J Oper Res
; 305(2): 617-629, 2023 Mar 01.
Artigo
Inglês
| MEDLINE | ID: mdl-36385922
7.
Functional analysis reveals G/U pairs critical for replication and trafficking of an infectious non-coding viroid RNA.
Nucleic Acids Res
; 48(6): 3134-3155, 2020 04 06.
Artigo
Inglês
| MEDLINE | ID: mdl-32083649
8.
Lone Pair π Contacts and Structure Signatures of r(UNCG) Tetraloops, Z-Turns, and Z-Steps: A WebFR3D Survey.
Molecules
; 27(14)2022 Jul 07.
Artigo
Inglês
| MEDLINE | ID: mdl-35889236
9.
A three-dimensional RNA motif mediates directional trafficking of Potato spindle tuber viroid from epidermal to palisade mesophyll cells in Nicotiana benthamiana.
PLoS Pathog
; 15(10): e1008147, 2019 10.
Artigo
Inglês
| MEDLINE | ID: mdl-31644572
10.
How to fold and protect mitochondrial ribosomal RNA with fewer guanines.
Nucleic Acids Res
; 46(20): 10946-10968, 2018 11 16.
Artigo
Inglês
| MEDLINE | ID: mdl-30215760
11.
JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs.
Nucleic Acids Res
; 44(W1): W320-7, 2016 07 08.
Artigo
Inglês
| MEDLINE | ID: mdl-27235417
12.
Corrigendum: Functional analysis reveals G/U pairs critical for replication and trafficking of an infectious non-coding viroid RNA.
Nucleic Acids Res
; 49(1): 596-598, 2021 01 11.
Artigo
Inglês
| MEDLINE | ID: mdl-33313761
13.
The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs.
Methods
; 103: 99-119, 2016 07 01.
Artigo
Inglês
| MEDLINE | ID: mdl-27125735
14.
R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server.
Nucleic Acids Res
; 43(W1): W15-23, 2015 Jul 01.
Artigo
Inglês
| MEDLINE | ID: mdl-26048960
15.
Identifying novel sequence variants of RNA 3D motifs.
Nucleic Acids Res
; 43(15): 7504-20, 2015 Sep 03.
Artigo
Inglês
| MEDLINE | ID: mdl-26130723
16.
The Nucleic Acid Database: new features and capabilities.
Nucleic Acids Res
; 42(Database issue): D114-22, 2014 Jan.
Artigo
Inglês
| MEDLINE | ID: mdl-24185695
17.
Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas.
RNA
; 19(10): 1327-40, 2013 Oct.
Artigo
Inglês
| MEDLINE | ID: mdl-23970545
18.
RNA 3-dimensional structural motifs as a critical constraint of viroid RNA evolution.
PLoS Pathog
; 14(2): e1006801, 2018 02.
Artigo
Inglês
| MEDLINE | ID: mdl-29470541
19.
R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures.
Nucleic Acids Res
; 41(Web Server issue): W15-21, 2013 Jul.
Artigo
Inglês
| MEDLINE | ID: mdl-23716643
20.
Comprehensive survey and geometric classification of base triples in RNA structures.
Nucleic Acids Res
; 40(4): 1407-23, 2012 Feb.
Artigo
Inglês
| MEDLINE | ID: mdl-22053086