Using Color, Texture and Object-Based Image Analysis of Multi-Temporal Camera Data to Monitor Soil Aggregate Breakdown.

Remote sensing has shown its potential to assess soil properties and is a fast and non-destructive method for monitoring soil surface changes. In this paper, we monitor soil aggregate breakdown under natural conditions. From November 2014 to February 2015, images and weather data were collected on a daily basis from five soils susceptible to detachment (Silty Loam with various organic matter content, Loam and Sandy Loam). Three techniques that vary in image processing complexity and user interaction were tested for the ability of monitoring aggregate breakdown. Considering that the soil surface roughness causes shadow cast, the blue/red band ratio is utilized to observe the soil aggregate changes. Dealing with images with high spatial resolution, image texture entropy, which reflects the process of soil aggregate breakdown, is used. In addition, the Huang thresholding technique, which allows estimation of the image area occupied by soil aggregate, is performed. Our results show that all three techniques indicate soil aggregate breakdown over time. The shadow ratio shows a gradual change over time with no details related to weather conditions. Both the entropy and the Huang thresholding technique show variations of soil aggregate breakdown responding to weather conditions. Using data obtained with a regular camera, we found that freezing-thawing cycles are the cause of soil aggregate breakdown.

Analysis of visible and near infrared spectral reflectance for assessing metals in soil.

Visible and near infrared reflectance (VNIR; 350-2500 nm) spectroscopy has greatly been used in soils, especially for studying variability in spectrally active soil components (e.g., organic carbon, clays, and Fe/Al oxides) based on their diagnostic spectral features. In recent years, this technique has also been applied to assess soil metallic ions. In this research, the feasibility of VNIR spectroscopy for determination of soil metals was investigated with two soil data sets: (i) artificially metal-spiked and (ii) in situ metal-contaminated soils. Results showed that reflectance spectra of neither metal-spiked soils with Cd, As, and Pb even at their higher concentrations of 20, 900, and 1200 mg kg(-1), respectively, nor in situ metal-contaminated soils (with concentrations of 30 mg Cd, 3019 mg As, and 5725 mg Pb kg(-1) soil) showed any recognized absorption peaks that correspond to soil metal concentrations. We observed variations in reflectance intensity for in situ metal-contaminated soils only, showing higher reflectance across the entire spectrum for strongly and lower for less metal-contaminated soils. A significant correlation was found between surface soil metals' concentrations and continuum removed spectra, while soil metals were also found significantly associated with soil organic matter and total Fe. A partial least square regression with cross-validation approach produced an acceptable prediction of metals (R (2) = 0.58-0.94) for both soil data sets, metal-spiked and in situ metal-contaminated soils. However, high values of root mean square error ruled out practical application of the achieved prediction models.

Geographic Object-Based Image Analysis - Towards a new paradigm.

The amount of scientific literature on (Geographic) Object-based Image Analysis - GEOBIA has been and still is sharply increasing. These approaches to analysing imagery have antecedents in earlier research on image segmentation and use GIS-like spatial analysis within classification and feature extraction approaches. This article investigates these development and its implications and asks whether or not this is a new paradigm in remote sensing and Geographic Information Science (GIScience). We first discuss several limitations of prevailing per-pixel methods when applied to high resolution images. Then we explore the paradigm concept developed by Kuhn (1962) and discuss whether GEOBIA can be regarded as a paradigm according to this definition. We crystallize core concepts of GEOBIA, including the role of objects, of ontologies and the multiplicity of scales and we discuss how these conceptual developments support important methods in remote sensing such as change detection and accuracy assessment. The ramifications of the different theoretical foundations between the 'per-pixel paradigm' and GEOBIA are analysed, as are some of the challenges along this path from pixels, to objects, to geo-intelligence. Based on several paradigm indications as defined by Kuhn and based on an analysis of peer-reviewed scientific literature we conclude that GEOBIA is a new and evolving paradigm.

The role of organic acid metabolites in geo-energy pipeline corrosion in a sulfate reducing bacteria environment.

The dominant factors in Microbial Influenced Corrosion (MIC) are hard to determine because normally several individual species and their metabolites are involved, and, moreover, different metabolites may cause opposing effects. To address this problem, the effects of individual metabolites from different species should be elucidated when at the same time other metabolites are held constant. In this study, the role is investigated of simulated organic acid metabolites, namely, acetic and L-ascorbic acids, on corrosion of geo-energy pipelines (carbon steel) in a simulated Sulfate Reducing Bacteria (SRB) environment. The SRB environment is simulated using a calcium alginate biofilm, abiotic sulfide, CO2, and NaCl brine. The electrochemical results show that both simulated organic acid metabolites accelerate corrosion in a simulated SRB environment. The results are further supported by electrochemical weight losses, kinetic corrosion activation parameters, multiple linear regression, ICP-OES, pH, and XRD. However, a comparison of electrochemical results with those published in the literature for a simulated SRB environment without acetic or L-ascorbic acid under similar experimental conditions shows that the presence of acetic in this study results in lower corrosion current densities while in presence of L-ascorbic acid results into higher corrosion current densities. This implies that acetic and L-ascorbic acids inhibit and accelerate corrosion, respectively. In addition, the results highlight that H2S is a key role of corrosion in the presence of organic acid. The results of this study are important new and novel information on the role of acetic and L-ascorbic acids in corrosion of geo-energy pipelines in the SRB environment.

Can infrared spectroscopy be used to measure change in potassium nitrate concentration as a proxy for soil particle movement?

Displacement of soil particles caused by erosion influences soil condition and fertility. To date, the cesium 137 isotope ((137)Cs) technique is most commonly used for soil particle tracing. However when large areas are considered, the expensive soil sampling and analysis present an obstacle. Infrared spectral measurements would provide a solution, however the small concentrations of the isotope do not influence the spectral signal sufficiently. Potassium (K) has similar electrical, chemical and physical properties as Cs. Our hypothesis is that it can be used as possible replacement in soil particle tracing. Soils differing in texture were sampled for the study. Laboratory soil chemical analyses and spectral sensitivity analyses were carried out to identify the wavelength range related to K concentration. Different concentrations of K fertilizer were added to soils with varying texture properties in order to establish spectral characteristics of the absorption feature associated with the element. Changes in position of absorption feature center were observed at wavelengths between 2,450 and 2,470 nm, depending on the amount of fertilizer applied. Other absorption feature parameters (absorption band depth, width and area) were also found to change with K concentration with coefficient of determination between 0.85 and 0.99. Tracing soil particles using K fertilizer and infrared spectral response is considered suitable for soils with sandy and sandy silt texture. It is a new approach that can potentially grow to a technique for rapid monitoring of soil particle movement over large areas.

Thermal infrared spectrometer for Earth science remote sensing applications-instrument modifications and measurement procedures.

In this article we describe a new instrumental setup at the University of Twente Faculty ITC with an optimized processing chain to measure absolute directional-hemispherical reflectance values of typical earth science samples in the 2.5 to 16 µm range. A Bruker Vertex 70 FTIR spectrometer was chosen as the base instrument. It was modified with an external integrating sphere with a 30 mm sampling port to allow measuring large, inhomogeneous samples and quantitatively compare the laboratory results to airborne and spaceborne remote sensing data. During the processing to directional-hemispherical reflectance values, a background radiation subtraction is performed, removing the effect of radiance not reflected from the sample itself on the detector. This provides more accurate reflectance values for low-reflecting samples. Repeat measurements taken over a 20 month period on a quartz sand standard show that the repeatability of the system is very high, with a standard deviation ranging between 0.001 and 0.006 reflectance units depending on wavelength. This high level of repeatability is achieved even after replacing optical components, re-aligning mirrors and placement of sample port reducers. Absolute reflectance values of measurements taken by the instrument here presented compare very favorably to measurements of other leading laboratories taken on identical sample standards.

Apoptosis- and necrosis-induced changes in light attenuation measured by optical coherence tomography.

Optical coherence tomography (OCT) was used to determine optical properties of pelleted human fibroblasts in which necrosis or apoptosis had been induced. We analysed the OCT data, including both the scattering properties of the medium and the axial point spread function of the OCT system. The optical attenuation coefficient in necrotic cells decreased from 2.2 +/- 0.3 mm(1) to 1.3 +/- 0.6 mm(-1), whereas, in the apoptotic cells, an increase to 6.4 +/- 1.7 mm(-1) was observed. The results from cultured cells, as presented in this study, indicate the ability of OCT to detect and differentiate between viable, apoptotic, and necrotic cells, based on their attenuation coefficient. This functional supplement to high-resolution OCT imaging can be of great clinical benefit, enabling on-line monitoring of tissues, e.g. for feedback in cancer treatment.

A Spatial-Spectral Approach for Visualization of Vegetation Stress Resulting from Pipeline Leakage.

Hydrocarbon leakage into the environment has large economic and environmental impact. Traditional methods for investigating seepages and their resulting pollution, such as drilling, are destructive, time consuming and expensive. Remote sensing is an efficient tool that offers a non-destructive investigation method. Optical remote sensing has been extensively tested for exploration of onshore hydrocarbon reservoirs and detection of hydrocarbons at the Earth's surface. In this research, we investigate indirect manifestations of pipeline leakage by way of visualizing vegetation anomalies in airborne hyperspectral imagery. Agricultural land-use causes a heterogeneous landcover; variation in red edge position between fields was much larger than infield red edge position variation that could be related to hydrocarbon pollution. A moving and growing kernel procedure was developed to normalzie red edge values relative to values of neighbouring pixels to enhance pollution related anomalies in the image. Comparison of the spatial distribution of anomalies with geochemical data obtained by drilling showed that 8 out of 10 polluted sites were predicted correctly while 2 out of 30 sites that were predicted clean were actually polluted.

Temperature-dependent optical properties of individual vascular wall components measured by optical coherence tomography.

Optical properties of tissues and tissue components are important parameters in biomedical optics. We report measurements of tissue refractive index n and the attenuation coefficient mu(t) using optical coherence tomography (OCT) of individual vascular wall layers and plaque components. Moreover, since the temperature dependence of optical properties is widely known, we compare measurements at room and body temperatures. A decrease of n and mu(t) is observed in all samples, with the most profound effect on samples with high lipid content. The sample temperature is of influence on the quantitative measurements within OCT images. For extrapolation of ex-vivo experimental results, especially for structures with high lipid content, this effect should be taken into account.

Localized measurement of optical attenuation coefficients of atherosclerotic plaque constituents by quantitative optical coherence tomography.

Optical coherence tomography (OCT) is a novel, high-resolution diagnostic tool that is capable of imaging the arterial wall and plaques. The differentiation between different types of atherosclerotic plaque is based on qualitative differences in gray levels and structural appearance. We hypothesize that a quantitative data analysis of the OCT signal allows measurement of light attenuation by the local tissue components, which can facilitate quantitative spatial discrimination between plaque constituents. High-resolution OCT images (at 800 nm) of human atherosclerotic arterial segments obtained at autopsy were histologically validated. Using a new, simple analysis algorithm, which incorporates the confocal properties of the OCT system, the light attenuation coefficients for these constituents were determined: for diffuse intimal thickening (5.5 +/- 1.2 mm(-1)) and lipid-rich regions (3.2 +/- 1.1 mm(-1)), the attenuation differed significantly from media (9.9 +/- 1.8 mm(-1)), calcifications (11.1 +/- 4.9 mm(-1) ) and thrombi (11.2 +/- 2.3 mm(-1)) (p < 0.01). These proof of principle studies show that simple quantitative analysis of the OCT signals allows spatial determination of the intrinsic optical attenuation coefficient of atherosclerotic tissue components within regions of interest. Combining morphological imaging by OCT with the observed differences in optical attenuation coefficients of the various regions may enhance discrimination between various plaque types.