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1.
Sensors (Basel) ; 23(23)2023 Nov 26.
Artigo em Inglês | MEDLINE | ID: mdl-38067785

RESUMO

This study reports on the successful use of a machine learning approach using attenuated total reflectance Fourier transform infrared (ATR FT-IR) spectroscopy for the classification and prediction of a donor's sex from the fingernails of 63 individuals. A significant advantage of ATR FT-IR is its ability to provide a specific spectral signature for different samples based on their biochemical composition. The infrared spectrum reveals unique vibrational features of a sample based on the different absorption frequencies of the individual functional groups. This technique is fast, simple, non-destructive, and requires only small quantities of measured material with minimal-to-no sample preparation. However, advanced multivariate techniques are needed to elucidate multiplex spectral information and the small differences caused by donor characteristics. We developed an analytical method using ATR FT-IR spectroscopy advanced with machine learning (ML) based on 63 donors' fingernails (37 males, 26 females). The PLS-DA and ANN models were established, and their generalization abilities were compared. Here, the PLS scores from the PLS-DA model were used for an artificial neural network (ANN) to create a classification model. The proposed ANN model showed a greater potential for predictions, and it was validated against an independent dataset, which resulted in 92% correctly classified spectra. The results of the study are quite impressive, with 100% accuracy achieved in correctly classifying donors as either male or female at the donor level. Here, we underscore the potential of ML algorithms to leverage the selectivity of ATR FT-IR spectroscopy and produce predictions along with information about the level of certainty in a scientifically defensible manner. This proof-of-concept study demonstrates the value of ATR FT-IR spectroscopy as a forensic tool to discriminate between male and female donors, which is significant for forensic applications.


Assuntos
Algoritmos , Unhas , Humanos , Masculino , Feminino , Espectroscopia de Infravermelho com Transformada de Fourier/métodos , Redes Neurais de Computação , Manejo de Espécimes
2.
Int J Legal Med ; 136(6): 1755-1765, 2022 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-35083508

RESUMO

The characteristics of ATR FT-IR spectroscopy are extremely attractive and escalating popularity in the field of body fluid analysis owing to its non-destructive, rapid, and reliable nature. Herein, the present study establishes that how ATR FT-IR spectroscopy could be utilized as a non-destructive, non-invasive, and confirmatory technique for sex discrimination from dry urine traces. Traces of body fluids are of paramount importance to criminal investigations as a major source of individualization by DNA profiling. However, the significance of DNA profiling from urine traces is highly diminished due to the small amount of DNA in urine traces. For that reason, the sex discrimination between the male and female donors is sorely desirable. In this study, ATR FT-IR spectroscopy in combination with partial least squares-discriminant analysis (PLS-DA) model unequivocally demonstrated the successful sex discrimination of an individual from dry traces of urine with 95.3% accuracy. PCA-Linear Discriminant Analysis (LDA) approach provided 85.2% of accuracy; however, PCA could not provide the sufficient findings for the discrimination of male and female urine spectra. The validation study was conducted and obtained 0% rates of false-positive and negative assignments. Additionally, this study also attended to assess the influence of substrates on the analysis of urine traces and results have been discussed.


Assuntos
Líquidos Corporais , Análise de Dados , Líquidos Corporais/química , DNA/análise , Análise Discriminante , Feminino , Humanos , Masculino , Sexismo , Espectroscopia de Infravermelho com Transformada de Fourier/métodos
3.
Anal Bioanal Chem ; 413(9): 2513-2522, 2021 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-33580831

RESUMO

Body fluid traces can provide highly valuable clues in forensic investigations. In particular, bloodstains are a common occurrence in criminal investigation, and the discrimination of menstrual and peripheral blood is a crucial step for casework involving rape and sexual assault. Most of the current protocols require the detection of characteristic menstrual blood components using sophisticated procedures that need to be performed in a laboratory. The present study uses attenuated total reflection Fourier transform-infrared (ATR FT-IR) spectroscopy as a nondestructive technique for discriminating menstrual and peripheral blood traces. This method incorporates statistical analysis and was evaluated by internal and external validation testing. A partial least squares discriminant analysis (PLSDA) classification model was created for differentiating the two types of blood in a binary manner. Excellent separation between menstrual and peripheral blood samples was achieved during internal validation. External validation resulted in 100% accuracy for predicting a sample as peripheral or menstrual blood. This study demonstrates that ATR FT-IR spectroscopy combined with chemometrics is a reliable approach for rapid and nondestructive discrimination of menstrual and peripheral bloodstains. It offers a significant advantage to forensic science due to the availability of portable instruments and the potential for bloodstain analysis at a crime scene. Graphical abstract.


Assuntos
Análise Química do Sangue , Manchas de Sangue , Menstruação/sangue , Espectroscopia de Infravermelho com Transformada de Fourier/métodos , Líquidos Corporais/química , Análise Discriminante , Feminino , Medicina Legal , Humanos , Análise dos Mínimos Quadrados , Delitos Sexuais
4.
J Appl Microbiol ; 130(3): 982-993, 2021 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-32780423

RESUMO

AIMS: Attenuated Total Reflection Fourier Transform Infrared (ATR-FT-IR) Spectroscopy and chemometric modelling, including soft independent modelling by class analogy (SIMCA), partial least squares discriminant analysis (PLS-DA) and support vector machine (SVM), were applied to attempt to discriminate 60 clinical isolates of Enterococcus faecium and Enterococcus faecalis and hence evaluate the performance of the spectroscopic approach in identifying enterococci infections. METHODS AND RESULTS: The bacterial samples were identified by polymerize chain reaction (PCR) amplification and their ATR-FT-IR spectra acquired. Spectra were processed to the second derivative using the Savitzky-Golay algorithm and normalized using extended multiplicative signal correction employing the UnscramblerX (CAMO, Norway) software package. Multivariate classification models and their performance were evaluated using Cohen's Kappa coefficient. Principal component analysis (PCA) score plots showed separate clusters of spectra related to membership to E. faecium and E. faecalis, with this explained by bands assigned to PO2 (1230 cm-1 ), P-O-C (1114 cm-1 ), monosubstituted alkene (997, 987 cm-1 ) and C-O (1070, 1055, 1036 cm-1 ) corresponding to teichoic acids, polysaccharides and peptidoglycan from the cell wall in PCA and PLS-DA loading plots. The best classification model for E. faecium and E. faecalis is SVM, indicating via highest Kappa score. The classification coefficient between SIMCA, PLS-DA, SVM and PCR as reference method were 0·59, 0·9 and 1, respectively, shown as the Kappa scores. CONCLUSIONS: The main spectral differences observed between the two clinically relevant enterococci species were associated with changes in the teichoic acid content of cell walls. With regard to the binary classification method, SVM was found to be the best performing classification model, providing the highest correlation with the PCR results. SIGNIFICANCE AND IMPACT OF THE STUDY: The study shows that ATR-FT-IR spectroscopy in combination with chemometric modelling can be applied for the phenotypic identification and discrimination of clinically relevant and similar enterococcal species.


Assuntos
Técnicas de Tipagem Bacteriana/métodos , Enterococcus/classificação , Enterococcus/isolamento & purificação , Infecções por Bactérias Gram-Positivas/microbiologia , Espectroscopia de Infravermelho com Transformada de Fourier/métodos , Algoritmos , Parede Celular/química , Análise Discriminante , Enterococcus/química , Análise dos Mínimos Quadrados , Análise de Componente Principal , Máquina de Vetores de Suporte
5.
Int J Legal Med ; 134(5): 1591-1602, 2020 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-32542440

RESUMO

The analysis of body fluids is of utmost importance in forensic casework since many biological fluids contain DNA. The ATR FT-IR spectroscopy is an emerging approach for the confirmatory, rapid, facile, non-destructive, and on-site identification and differentiation of body fluid stains. Notwithstanding the ATR FT-IR spectroscopy is showing a colossal promise towards the identification of body fluids, and further forensic enquiry related to substrate's interference is still in its infancy stage. Therefore, in the present proof-of-concept study, the ATR FT-IR spectroscopy has been utilized for the detection of vaginal fluid stains and to investigate the effect of different substrates on sample analysis. Simulated vaginal fluid samples were prepared on some selected substrates such as glass, plastic, floor tiles, polished wood, paper, and on various cloth substrates and analyzed without any prior sample preparation. Results suggested that vaginal fluid can be successfully detected on non-porous substrates, but it turned out to be a challenging task on porous substrates. However, on the basis of certain peaks, successful identification of vaginal fluid can be done directly on various case-related substrates. The best approach for the detection of vaginal fluid depends upon the nature of substrates and type of interference encountered. In addition, 10 non-vaginal fluid substances which look similar to vaginal fluid and which may lead to misclassification of vaginal fluid or can deliver false-positive results were also analyzed. The spectra of look-alike substances were classified using the chemometric tools such as PCA and PCA-LDA. The developed PCA model successfully classified all vaginal fluid samples from non-vaginal fluid substances with 100% accuracy, specificity, and sensitivity rate. In addition, the effects of other factors such as aging and mixing with other body fluids have also been studied and the results have been described.


Assuntos
Líquidos Corporais/química , Espectroscopia de Infravermelho com Transformada de Fourier , Adulto , Análise Discriminante , Feminino , Vidro , Humanos , Papel , Plásticos , Análise de Componente Principal/métodos , Estudo de Prova de Conceito , Sensibilidade e Especificidade , Propriedades de Superfície , Têxteis , Vagina/química , Madeira
6.
Int J Legal Med ; 134(2): 411-432, 2020 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-31814056

RESUMO

Semen is most frequently encountered body fluid in forensic cases apart from blood especially in sexual assault cases. The presence and absence of semen can help in conviction or exoneration of a suspect by either confirming or refuting the claims put forward by the suspect and the victim. However, in the wake of limited studies on non-destructive and rapid analysis of semen, it is fairly difficult. Therefore, it is an increasing demand to pioneer the application of available analytical methods in such manner that non-destructive, automated, rapid, and reliable identification and discrimination of body fluids can be established. In the present study, such a methodological application of attenuated total reflectance Fourier transform infrared (ATR FT-IR) spectroscopy has been put forward as one of the initial steps towards the identification and discrimination/classification of seminal fluid from vaginal fluid and other human biological as well as non-biological look-alike semen substances using chemometric tools which are principal component analysis (PCA), partial least square regression (PLSR), and linear discriminant analysis (LDA). Effect of other simulated factors such as substrate interference, mixing with other body fluids, dilutions, and washing and chemical treatments to the samples has been studied. PCA resulted in 98.8% of accuracy for the discrimination of seminal fluid from vaginal fluid whilst 100% accuracy was obtained using LDA method. One hundred percent discrimination was achieved to discriminate semen from other biological fluids using PLSR and LDA, and from non-biological substances using PCA-LDA models. Furthermore, results of the effect of substrates, chemical treatment, mixing with vaginal secretions, and dilution have also been described.


Assuntos
Líquidos Corporais/química , Sêmen/química , Espectroscopia de Infravermelho com Transformada de Fourier , Adulto , Análise Discriminante , Feminino , Ciências Forenses/métodos , Humanos , Análise dos Mínimos Quadrados , Masculino , Análise de Componente Principal , Estudo de Prova de Conceito
7.
Anal Bioanal Chem ; 411(20): 5127-5138, 2019 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-31147759

RESUMO

A quantitative non-destructive express method of determining fillers -kaolin and chalk- in paper was created using attenuated total reflectance Fourier transform infrared (ATR-FT-IR) spectroscopy in the mid-IR and far-IR region (3800-245 cm-1) combined with partial least squares (PLS) data analysis. Altogether, 30 two-component (cellulose pulp + kaolin and cellulose pulp + chalk) reference paper samples with known different filler concentrations and one reference paper sample without any fillers were prepared for calibration and validation. The reference values of filler concentrations in the prepared papers were determined by gravimetric analysis via dry ashing (for establishing accurate concentrations of fillers in paper) and ATR-FT-IR microspectroscopy (for evaluating homogeneity of the papers). Two-component (cellulose pulp + kaolin or cellulose pulp + chalk) PLS models were created with papers of different cellulose types and containing different amounts of fillers. The best model had root mean square errors of prediction (RMSEP) for determining the kaolin or chalk content in the two-component papers of 2.0 and 2.1 g/100 g, respectively. The performance indices were 90.4% and 92.9%, respectively. As a demonstration of practical applicability of the method, different papers from books, journals, etc. were analysed. It was concluded that the developed quantitative method is suitable for non-destructive express analysis of kaolin or chalk in paper. Graphical abstract.

8.
Pharm Dev Technol ; 24(5): 649-662, 2019 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-30474456

RESUMO

This study was conducted to investigate the influence of formulation development methods on the stability (secondary structure, aggregation, and biological activity) of protein drugs embedded in lipid matrices. Catalase, horseradish peroxidase, and α-chymotrypsin were employed as model proteins, while Precirol® AT05 (glyceryl palmitostearate) was used as lipid matrix. Protein-loaded lipid matrices were prepared using melting and mixing and wet granulation methods. Attenuated total reflectance Fourier transform infrared (ATR FT-IR) spectroscopy, size exclusion chromatography (SEC) and biological activity analyses were performed. ATR FT-IR analysis indicated significant interference of the lipid with the protein amide-I band, which was eliminated using spectral subtraction. Wet granulation method induced more changes in protein secondary structure compared to melting and mixing method. SEC analysis gave evidence of protein aggregation for catalase upon adopting the wet granulation method. The biological activity of catalase was found to reduce significantly than other two proteins upon using wet granulation method, which might be ascribed to both secondary structure alterations and the formation of aggregates. Horseradish peroxidase and α-chymotrypsin did not form any soluble aggregates. In conclusion, melting and mixing method emerged as a better incorporation method compared to wet granulation because of better stability shown by the formulated proteins.


Assuntos
Diglicerídeos/química , Veículos Farmacêuticos/química , Proteínas/química , Animais , Catalase/administração & dosagem , Catalase/química , Quimotripsina/administração & dosagem , Quimotripsina/química , Composição de Medicamentos , Liberação Controlada de Fármacos , Estabilidade de Medicamentos , Peroxidase do Rábano Silvestre/administração & dosagem , Peroxidase do Rábano Silvestre/química , Humanos , Agregados Proteicos , Estabilidade Proteica , Estrutura Secundária de Proteína , Proteínas/administração & dosagem
9.
J Biol Chem ; 291(9): 4295-307, 2016 Feb 26.
Artigo em Inglês | MEDLINE | ID: mdl-26592930

RESUMO

The Na(+)-coupled betaine symporter BetP senses changes in the membrane state and increasing levels of cytoplasmic K(+) during hyperosmotic stress latter via its C-terminal domain and regulates transport activity according to both stimuli. This intriguing sensing and regulation behavior of BetP was intensively studied in the past. It was shown by several biochemical studies that activation and regulation depends crucially on the lipid composition of the surrounding membrane. In fact, BetP is active and regulated only when negatively charged lipids are present. Recent structural studies have revealed binding of phosphatidylglycerol lipids to functional important parts of BetP, suggesting a functional role of lipid interactions. However, a regulatory role of lipid interactions could only be speculated from the snapshot provided by the crystal structure. Here, we investigate the nature of lipid-protein interactions of BetP reconstituted in closely packed two-dimensional crystals of negatively charged lipids and probed at the molecular level with Fourier transform infrared (FTIR) spectroscopy. The FTIR data indicate that K(+) binding weakens the interaction of BetP especially with the anionic lipid head groups. We suggest a regulation mechanism in which lipid-protein interactions, especially with the C-terminal domain and the functional important gating helices transmembrane helice 3 (TMH3) and TMH12, confine BetP to its down-regulated transport state. As BetP is also activated by changes in the physical state of the membrane, our results point toward a more general mechanism of how active transport can be modified by dynamic lipid-protein interactions.


Assuntos
Proteínas de Bactérias/química , Corynebacterium glutamicum , Bicamadas Lipídicas/química , Modelos Moleculares , Simportadores/química , Proteínas de Bactérias/antagonistas & inibidores , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Cardiolipinas/química , Cardiolipinas/metabolismo , Detergentes/química , Ativação Enzimática , Glucosídeos/química , Interações Hidrofóbicas e Hidrofílicas , Bicamadas Lipídicas/metabolismo , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/genética , Fragmentos de Peptídeos/metabolismo , Fosfatidilgliceróis/química , Fosfatidilgliceróis/metabolismo , Fosfatidilinositóis/química , Fosfatidilinositóis/metabolismo , Potássio/química , Potássio/metabolismo , Conformação Proteica , Domínios e Motivos de Interação entre Proteínas , Multimerização Proteica , Estabilidade Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Espectroscopia de Infravermelho com Transformada de Fourier , Simportadores/antagonistas & inibidores , Simportadores/genética , Simportadores/metabolismo , Temperatura
10.
Anal Bioanal Chem ; 408(13): 3373-9, 2016 May.
Artigo em Inglês | MEDLINE | ID: mdl-26968569

RESUMO

In this paper, a spectral collection of over 150 ATR-FT-IR spectra of materials related to cultural heritage and conservation science has been presented that have been measured in the extended region of 4000-80 cm(-1) (mid-IR and far-IR region). The applicability of the spectra and, in particular, the extended spectral range, for investigation of art-related materials is demonstrated on a case study. This collection of ATRFT-IR reference spectra is freely available online (http://tera.chem.ut.ee/IR_spectra/) and is meant to be a useful tool for researchers in the field of conservation and materials science.

11.
Anal Bioanal Chem ; 407(24): 7435-42, 2015 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-26195028

RESUMO

Blood is one of the most common and informative forms of biological evidence found at a crime scene. A very crucial step in forensic investigations is identifying a blood stain's origin. The standard methods currently employed for analyzing blood are destructive to the sample and time-consuming. In this study, attenuated total reflection (ATR) Fourier transform infrared (FT-IR) spectroscopy is used as a confirmatory, nondestructive, and rapid method for distinction between human and animal (nonhuman) blood. Partial least squares-discriminant analysis (PLS-DA) models were built and demonstrated complete separation between human and animal donors, as well as distinction between three separate species: human, cat, and dog. Classification predictions of unknown blood donors were performed by the model, resulting in 100 % accuracy. This study demonstrates ATR FT-IR spectroscopy's great potential for blood stain analysis and species discrimination, both in the lab and at a crime scene since portable ATR FT-IR instrumentation is commercially available.


Assuntos
Espectroscopia de Infravermelho com Transformada de Fourier/métodos , Animais , Humanos
12.
Appl Spectrosc ; 77(5): 513-520, 2023 May.
Artigo em Inglês | MEDLINE | ID: mdl-37203321

RESUMO

Glucose-6 phosphate dehydrogenase (G6PD) deficiency is an X-linked blood disease that affects 400 million people globally and is especially prevalent in malaria-endemic regions. A significant portion of carriers are asymptomatic and undiagnosed posing complications in the eradication of malaria as it restricts the types of drugs used for malaria treatment. A simple and accurate diagnosis of the deficiency is vital in the eradication of malaria. In this study, we investigate the potential of attenuated total reflection Fourier transform infrared spectroscopy (ATR FT-IR) as a diagnostic technique for G6PD deficiency. Venous blood samples were collected in lithium heparin anticoagulant tubes from G6PD partial and fully deficient volunteers, n = 17, and normal volunteers, n = 59, in Khon Kaen, Thailand. Spectra of aqueous and dry samples were acquired of whole blood, plasma, and red blood cells, and modeled using partial least squares discriminant analysis (PLS-DA). PLS-DA modeling resulted in a sensitivity of 0.800 and specificity of 0.800 correctly classifying fully deficient participants as well as a majority of partially deficient females who are often misdiagnosed as normal by current screening methods. The viability of utilizing aqueous samples has always been hindered by the variability of hydration in the sample, but by employing multicurve curve resolution-alternating least squares to subtract water from each sample we are able to produce high-quality spectra with minimized water contributions. The approach shows proof of principle that ATR FT-IR combined with multivariate data analysis could become a frontline screening tool for G6PD deficiency by improving tailored drug treatments and ultimately saving lives.


Assuntos
Deficiência de Glucosefosfato Desidrogenase , Malária , Humanos , Análise Discriminante , Deficiência de Glucosefosfato Desidrogenase/diagnóstico , Análise dos Mínimos Quadrados , Malária/diagnóstico , Fosfatos , Espectroscopia de Infravermelho com Transformada de Fourier/métodos , Tailândia
13.
Appl Spectrosc ; 76(4): 451-461, 2022 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-33876968

RESUMO

Malaria is considered to be one of the most catastrophic health issues in the whole world. Vibrational spectroscopy is a rapid, robust, label-free, inexpensive, highly sensitive, nonperturbative, and nondestructive technique with high diagnostic potential for the early detection of disease agents. In particular, the fingerprinting capability of attenuated total reflection spectroscopy is promising as a point-of-care diagnostic tool in resource-limited areas. However, improvements are required to expedite the measurements of biofluids, including the drying procedure and subsequent cleaning of the internal reflection element to enable high throughput successive measurements. As an alternative, we propose using an inexpensive coverslip to reduce the sample preparation time by enabling multiple samples to be collectively dried together under the same temperature and conditions. In conjunction with partial least squares regression, attenuated total reflection spectroscopy was able to detect and quantify the parasitemia with root mean square error of cross-validation and R2 values of 0.177 and 0.985, respectively. Here, we characterize an inexpensive, disposable coverslip for the high throughput screening of malaria parasitic infections and thus demonstrate an alternative approach to direct deposition of the sample onto the internal reflection element.


Assuntos
Malária , Humanos , Análise dos Mínimos Quadrados , Malária/diagnóstico , Espectroscopia de Infravermelho com Transformada de Fourier/métodos
14.
Environ Sci Pollut Res Int ; 28(15): 18342-18353, 2021 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-32557040

RESUMO

The ubiquitous ß-Proteobacterium Gallionella ferruginea is known as stalk-forming, microaerophilic iron(II) oxidizer, which rapidly produces iron oxyhydroxide precipitates. Uranium and neptunium sorption on the resulting intermixes of G. ferruginea cells, stalks, extracellular exudates, and precipitated iron oxyhydroxides (BIOS) was compared to sorption to abiotically formed iron oxides and oxyhydroxides. The results show a high sorption capacity of BIOS towards radionuclides at circumneutral pH values with an apparent bulk distribution coefficient (Kd) of 1.23 × 104 L kg-1 for uranium and 3.07 × 105 L kg-1 for neptunium. The spectroscopic approach by X-ray absorption spectroscopy (XAS) and ATR FT-IR spectroscopy, which was applied on BIOS samples, showed the formation of inner-sphere complexes. The structural data obtained at the uranium LIII-edge and the neptunium LIII-edge indicate the formation of bidentate edge-sharing surface complexes, which are known as the main sorption species on abiotic ferrihydrite. Since the rate of iron precipitation in G. ferruginea-dominated systems is 60 times faster than in abiotic systems, more ferrihydrite will be available for immobilization processes of heavy metals and radionuclides in contaminated environments and even in the far-field of high-level nuclear waste repositories.


Assuntos
Netúnio , Urânio , Compostos Férricos , Gallionellaceae , Espectroscopia de Infravermelho com Transformada de Fourier , Urânio/análise
15.
Appl Spectrosc ; 75(7): 839-845, 2021 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-33393352

RESUMO

Attenuated Total Reflection (ATR) spectroscopy coupled with a microscope allows for the analysis of specimens without any preparation, spatially correlated with the morphology of the specimen. These characteristics make micro-ATR systems very useful for studying gemstones and in particular amber samples. Indeed, in this report, the micro-ATR technique was used to characterize three Burmite samples, as case studies. Particularly, focusing the ATR crystal spot on the amber surface where a difference in the Ultraviolet (UV) reaction was previously detected, thereby relative differences in the IR spectrum could be analyzed. Here we present a methodology combining the UV imaging technique with the micro-Attenuated total reflection Fourier transform infrared spectroscopy (micro-ATR/FT-IR) analyses, in order to correlate the fluorescence information with the molecular vibrational modes of amber and their relative spatial distribution. Finally, this work is intended as an initial methodology study and part of the amber characterization project, focused on characterizing the Burmese amber collection of the Peretti Museum Foundation from several disciplines (i.e., palaeoentomology, vibrational spectroscopy, neutron tomography, etc.).


Assuntos
Âmbar , Microscopia , Espectrofotometria Infravermelho , Espectroscopia de Infravermelho com Transformada de Fourier
16.
Int J Biol Macromol ; 159: 911-921, 2020 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-32445816

RESUMO

Chitosan/1,3-ß-D-glucan matrices have been recently used in various biomedical applications. Within this study, the structural changes in hybrid polysaccharide chitosan/1,3-ß-D-glucan matrices cross-linked at 70 °C and 80 °C were detected with Attenuated Total Reflection Fourier Transform Infrared spectroscopy (ATR FT-IR) and Raman spectroscopy enabled thorough insights into molecular structure of studied biomaterials, whereas X-ray photoelectron spectroscopy (XPS) and atomic force microscopy (AFM) provided their surface characteristics with confirmation of their effective and non-destructive properties. There are temperature-dependent differences in the chemical interactions between 1,3-ß-D-glucan units and N-glucosamine in chitosan, resulting in surface polarity changes. The second order derivatives and deconvolution revealed the alterations in the secondary structure of studied matrices, along with different sized grain-like structures revealed by AFM. Since surface physicochemical properties of biomaterials have great impact on cell behavior, abovementioned techniques may allow to optimize and modify the preparation of polymeric matrices with desired features.


Assuntos
Quitosana/química , Polímeros/química , Análise Espectral , Temperatura , beta-Glucanas/química , Microscopia de Força Atômica , Estrutura Molecular , Espectroscopia de Infravermelho com Transformada de Fourier , Análise Espectral Raman
17.
Protein J ; 38(5): 551-564, 2019 10.
Artigo em Inglês | MEDLINE | ID: mdl-31054037

RESUMO

Protein drugs are important therapeutic agents however; they may degrade during formulation processing. The objective of this study was to investigate the correlation between secondary structure alterations and the retentions of biological activity of protein upon the application of thermal stress. Catalase, horseradish peroxidase and α- chymotrypsin were employed as model proteins. Each protein was heated in a solid and solution state at a temperature of 70 °C for 1 h. Attenuated total reflectance Fourier transform infrared spectroscopy, size-exclusion chromatography and biological activity assay were performed. Results showed that heat-exposure of protein solids at 70 °C caused minimum changes in secondary structure and biological activity was almost retained. However, thermal exposure of protein aqueous solution induced significant changes in the secondary structure indicated by area overlap values and caused considerable reduction in the biological activity. The changes in secondary structures were found to be in full alignment with the loss of biological activity for both protein solids as well as aqueous solutions. Catalase lost entire biological activity upon heating in the solution state. In conclusion, the findings of the present study indicate a direct correlation between protein secondary structure alterations and the retention of biological activity which can be taken into account during the development and delivery of protein drugs formulations.


Assuntos
Desnaturação Proteica , Proteínas/química , Animais , Catalase/química , Cromatografia em Gel , Quimotripsina/química , Peroxidase do Rábano Silvestre/química , Temperatura Alta , Humanos , Preparações Farmacêuticas/química , Estrutura Secundária de Proteína , Espectroscopia de Infravermelho com Transformada de Fourier
18.
Appl Spectrosc ; 73(2): 182-194, 2019 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-30353745

RESUMO

A new analysis methodology utilizing multivariate curve resolution (MCR) has been successfully combined with Fourier transform infrared (FT-IR) measurement of in vivo human skin to resolve lipid phase constituents in the spectra relative to high and low chain ordering. A clinical study was performed to measure lipid order through different depths of stratum corneum of human subjects. Fourier transform IR spectra were collected through the top 10 layers of the skin on four sites on the left and right forearm of 12 individuals. Depth profiling was achieved by tape stripping to remove layers of skin with 10 successive tapes from each site. In vivo ATR FT-IR spectra were collected after removing each tape. Three isolated spectral regions were analyzed, centered around 2850 cm-1, 1460-1480 cm-1, and 730 cm-1, corresponding to stretching, scissoring, and rocking -CH2 vibrational modes, respectively. Both traditional lipid conformation analysis and MCR analysis were performed on the same spectral data. The lipid order ratio, expressed as the fraction of highly ordered orthorhombic (OR) lipids to the total lipids content (orthorhombic + hexagonal [HEX] + liquid crystal [LC]), was assessed as function of depth. Lipid order depth profiles (LODP) show an increase in order with the stratum corneum depth which can be adequately described by an exponential function for the data obtained in this study. The LODP derived from the three vibrational modes show very similar trends, although the absolute order ratios are somewhat different. The variance of the skin LODP across individuals is much greater than between sites within the same individual. The higher arm sites closer to the elbow on the left and right arm show no statistically significant difference and are recommended for use in comparative studies. The scissoring mode shows the highest sensitivity for determination of LODP value.


Assuntos
Lipídeos/análise , Pele/química , Espectroscopia de Infravermelho com Transformada de Fourier/métodos , Feminino , Humanos , Análise Multivariada
19.
Spectrochim Acta A Mol Biomol Spectrosc ; 173: 175-181, 2017 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-27643467

RESUMO

The possibility of classification of single- and two-component textile materials using ATR-FT-IR spectra and chemometric methods, principal component analysis (PCA) and discriminant analysis, was assessed. Altogether 89 textile samples belonging to 26 different types (11 one- and 15 two-component textiles) were investigated. It was found that PCA classification using only two or three principal components (PCs) enables identifying different one- and two-component textiles, although with two important limitations: it was not always possible to distinguish between the cellulose-based fibres (cotton, linen and in some cases viscose) and it was only partly possible to distinguish between silk and wool. The statistical discriminant analysis can use as many PCs as there are sample classes and due to that can discriminate between single-component fibres, including viscose from linen and cotton as well as silk from wool. Besides that, in both of these cases, involving optical microscopy as an additional technique enabled unequivocal identification of the fibres. The possibilities of semi-quantitative analysis of mixed fibres (cotton-polyester, wool-polyester and wool-polyamide) with PCA were investigated and it was found that approximate quantitative composition is obtainable if for the mixed fibre sample a number of spectra are averaged in order to minimize the effect of structural inhomogeneity. For approximate content determination 25 spectra of selected two-component samples were registered for calibration and the averaged spectrum for each sample was computed. Due to the structural inhomogeneity of mixed textiles, obtaining accurate quantitative composition from real samples is not possible with ATR-FT-IR. The main problems with ATR-FT-IR-PCA classification are (1) difficulties in getting high quality spectra from some textiles (e.g. polyacrylic), (2) inhomogeneity of the textile fibres in the case of two-component fibres and (3) intrinsic similarity between the spectra of some fibres (e.g. cotton and linen). In order to test the homogeneity of mixed fibres, microscopic and IR-microspectroscopic analysis was carried out.

20.
Methods Mol Biol ; 1600: 113-124, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28478562

RESUMO

Fourier transform infrared spectroscopy (FT-IR) was used to scan whole bacterial cells as well as lipopolysaccharides (LPSs, endotoxins) isolated from them. Proteus mirabilis cells, with chemically defined LPSs, served as a model for the ATR FT-IR method. The paper focuses on three steps of infrared spectroscopy: (1) sample preparation, (2) IR scanning, and (3) multivariate analysis of IR data (principal component analysis, PCA).


Assuntos
Endotoxinas/análise , Proteus mirabilis/metabolismo , Espectroscopia de Infravermelho com Transformada de Fourier/métodos , Lipopolissacarídeos/análise , Análise Multivariada , Análise de Componente Principal
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