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1.
Molecules ; 23(7)2018 Jul 19.
Artigo em Inglês | MEDLINE | ID: mdl-30029469

RESUMO

In this manuscript, we combined DFT calculations (PBE0-D3/def2-TZVP level of theory) and a Cambridge Structural Database (CSD) survey to evaluate the ability of perchlorinated cyclopenta- and cyclohexatetrelanes in establishing tetrel bonding interactions. For this purpose, we used Tr5Cl10 and Tr6Cl12 (Tr = Si and Ge) and HCN, HF, OH- and Cl- as electron donor entities. Furthermore, we performed an Atoms in Molecules (AIM) analysis to further describe and characterize the interactions studied herein. A survey of crystal structures in the CSD reveals that close contacts between Si and lone-pair-possessing atoms are quite common and oriented along the extension of the covalent bond formed by the silicon with the halogen atom.


Assuntos
Ciclopentanos/química , Modelos Químicos , Bases de Dados Factuais , Modelos Moleculares , Eletricidade Estática
2.
Molecules ; 23(3)2018 Mar 19.
Artigo em Inglês | MEDLINE | ID: mdl-29562728

RESUMO

In this manuscript, we combined a search in the Cambridge Structural Database (CSD) and ab initio calculations (RI-MP2/def2-TZVPD level of theory) to analyze the ability of trisulphide and triselenide moieties to establish chalcogen 'like-like' interactions. A preliminary CSD inspection revealed two predominant structural patterns, depending on the anti or syn conformation adopted by the substituents of the S3/Se3 bridge, leading to bifurcated or double chalcogen bonding interactions, respectively. In order to analyze these two relevant structural motifs we have used a series of S and Se derivatives Ch3X2 (Ch = S and Se and X = H, F, CN, and CF3) which act as both electron donor (using the lone pairs) and acceptor (using the σ-holes) entities. Besides, we have carried out "atoms in molecules" (AIM) and natural bonding orbital (NBO) analyses to further describe and characterize the chalcogen bonding interactions described herein. As far as we know, chalcogen···chalcogen interactions involving trichalconides (S3/Se3) have not been previously described in literature a may be of great importance in the preparation and characterization of new solids based on this subclass of σ-hole bonding.


Assuntos
Calcogênios/química , Bases de Dados como Assunto , Modelos Moleculares , Selênio/química , Sulfetos/química , Conformação Molecular , Eletricidade Estática , Termodinâmica
3.
Molecules ; 23(1)2017 Dec 22.
Artigo em Inglês | MEDLINE | ID: mdl-29271896

RESUMO

In this manuscript, we combined ab initio calculations (RI-MP2/def2-TZVPD level of theory) and a search in the CSD (Cambridge Structural Database) to analyze the influence of aromatic substitution in charge-assisted multivalent halogen bonding complexes. We used a series of benzene substituted iodine derivatives C6H4(IF4)Y (Y = H, NH2, OCH3, F, CN, and CF3) as Lewis acids and used Cl- as electron rich interacting atoms. We have represented the Hammett's plot and observed a good regression coefficient (interaction energies vs. Hammett's σ parameter). Additionally, we demonstrated the direct correlation between the Hammett's σ parameter and the value of molecular electrostatic potential measured at the I atom on the extension of the C-I bond. Furthermore, we have carried out AIM (atoms in molecules) and NBO (natural bonding orbital) analyses to further describe and characterize the interactions described herein. Finally, we have carried out a search in the CSD (Cambridge Structural Database) and found several X-ray structures where these interactions are present, thus giving reliability to the results derived from the calculations.


Assuntos
Derivados de Benzeno/química , Cloro/química , Elétrons , Flúor/química , Iodo/química , Ácidos de Lewis/química , Ligação de Hidrogênio , Modelos Moleculares , Teoria Quântica , Eletricidade Estática , Termodinâmica
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