Sandpipers go with the flow: Correlations between estuarine conditions and shorebird abundance at an important stopover on the Pacific Flyway.

Estuaries of major rivers provide important stopover habitat for migratory birds throughout the world. These estuaries experience large amounts of freshwater inputs from spring runoff. Understanding how freshwater inputs affect food supply for migrating birds, and how birds respond to these changes will be essential for effective conservation of critical estuarine habitats. We estimated trends over time in counts of Western Sandpiper (Calidris mauri) and Pacific Dunlin (Calidris alpina pacifica) during northward migration on the Fraser River estuary, British Columbia, Canada, where shorebirds feed extensively on intertidal biofilm and invertebrates. We also examined whether counts were correlated with a suite of environmental variables related to local conditions (precipitation, temperature, wind speed and direction, solar radiation, tidal amplitude, and discharge rates from the Fraser River) during a total of 540 surveys from 1991 to 2019. Counts of Western Sandpiper declined ~54% (-2.0% per annum) over the entire study period, and 23% from 2009 to 2019 (-0.9% per annum). Counts of Pacific Dunlin did not show a statistically significant change over the study period. Counts of shorebirds were lower when discharge from the Fraser River was high, which we propose results from a complex interaction between the abrupt changes in salinity and the estuarine food web related to the quantity or quality of intertidal biofilm. Counts were also higher when tidal amplitude was lower (neap tides), potentially related to longer exposure times of the mudflats than during spring tides. Effects of wind are likely related to birds delaying departure from the stopover site during unfavorable wind conditions. The negative trend in migrating Western Sandpipers is consistent with declines in nonbreeding areas as observed in Christmas Bird Counts. Understanding causes of population change in migratory shorebirds highlights the need for research on mechanistic pathways in which freshwater inputs affect food resources at estuarine stopovers.

Intercontinental genetic structure and gene flow in Dunlin (Calidris alpina), a potential vector of avian influenza.

Waterfowl (Anseriformes) and shorebirds (Charadriiformes) are the most common wild vectors of influenza A viruses. Due to their migratory behavior, some may transmit disease over long distances. Migratory connectivity studies can link breeding and nonbreeding grounds while illustrating potential interactions among populations that may spread diseases. We investigated Dunlin (Calidris alpina), a shorebird with a subspecies (C. a. arcticola) that migrates from nonbreeding areas endemic to avian influenza in eastern Asia to breeding grounds in northern Alaska. Using microsatellites and mitochondrial DNA, we illustrate genetic structure among six subspecies: C. a. arcticola,C. a. pacifica,C. a. hudsonia,C. a. sakhalina,C. a. kistchinski, and C. a. actites. We demonstrate that mitochondrial DNA can help distinguish C. a. arcticola on the Asian nonbreeding grounds with >70% accuracy depending on their relative abundance, indicating that genetics can help determine whether C. a. arcticola occurs where they may be exposed to highly pathogenic avian influenza (HPAI) during outbreaks. Our data reveal asymmetric intercontinental gene flow, with some C. a. arcticola short-stopping migration to breed with C. a. pacifica in western Alaska. Because C. a. pacifica migrates along the Pacific Coast of North America, interactions between these subspecies and other taxa provide route for transmission of HPAI into other parts of North America.

GLOBAL MITOCHONDRIAL DNA PHYLOGEOGRAPHY OF HOLARCTIC BREEDING DUNLINS (CALIDRIS ALPINA).

Comparison of mitochondrial DNA (mtDNA) control-region sequences of 155 dunlins from 15 breeding populations confirmed the existence of five major phylogeographic groups in the circumpolar breeding range of this migratory shorebird species. Time estimates of the origin of groups, based on sequence divergences and a molecular clock for birds, suggest a scenario of repeated fragmentation of populations in isolated tundra refugia during the late Pleistocene. The distribution of about three-quarters of all detected molecular variance between phylogeographic groups attests to the strongly subdivided genetic population structure in dunlins that is being maintained by natal philopatry. Each mtDNA phylogeographic group can be related to a morphometrically defined subspecies, but several other recognized subspecies are not supported by monophyletic mtDNA lineages within their purported ranges. More detailed analysis of several European populations reveals low amounts of gene flow and the partitioning of a substantial fraction of molecular variance between them. This ongoing evolution of population-genetic structuring within the European phylogeographic group most likely started with the last retreat of the ice sheets some 10,000 years ago. Dunlins thus provide one of the clearest examples of the linkage between historical and contemporary components of mtDNA phylogeographic structuring in birds.